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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0378600 |
| Transcript ID | LotjaGi3g1v0378600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase family protein; TAIR: AT3G61220.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9M2E2|SDR1_ARATH (+)-neomenthol dehydrogenase; TrEMBL-Plants: tr|K7KC62|K7KC62_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0378600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77121336..77126289) extracted from Lotus japonicus Gifu genome v1.2.
CAGGTATGGAGCCATCTTCAGAGACAGAATCAAGGAAGGGGAAGTTCACCGGTTGAGCATCGATCATGAACCTTCTGCTT TTCAGAAATCACCACCTTTCTTCAACTCGAAATGTTTCACATATTCTGCTTGATTTTAATCTCCAAAAAATGACCAGTAT TTTTATTTTCATAAATAATTTGGAAAATAAATCATCAGGCCATTTACACTTGTTGTTTTTAGTGGTAGTTTTAGTTTTCT ATTCTACAATCATTGCAAATAAATAATTGATAAAAGGACGAAAAAGAATATAGCAAACCATGTTTCAGTCAAAAGTAGAC GAATTTGTTTCCATAAATGAAATTATTTTCATTGCATATCATGTTTATATATGCTTTTTTAGGCTTCCTTCCAAATTACA CTCTCTTTAAAAGATATAGCTATATATGAAAAATGACAAGCACAATAAGCTGGCAGGCAGAGGCTAACATGCATATTTAA TATAATAGGGTGTCACATGCATATATATTATATGGTAATATAGTGGGGTGCAGCATCCTTGTTCTCGTTCTCATTGTTAA CATCGATGTCAGCAATACAACTAAATTAAAGCCACACATTGTGGCCAAAATTTAGTCCAACATTACGACTATTAAAAGCC AACTTGTTAAATTACAACAAGTAATTGTGTGATGGTGGCGGGGCTTGCTTAATAGATAAGAAGCAAAGCTGGAAACGAAG AGATAAGAAGCAAAGCAATGGCGGTGAAGAGAAGAAACAGTGCAGAGGCGGTGAAAATTTCCTATAAATAGAGATGTTTC AATTTGTTTCAAATTCATCCCATAGCTGAATTGTTAGAGAGAATATACACCACAACAAGCAATTCAACGTGAATTGCTAT TAGAGAGAAAAATACCATTGAGGAAAATATTAGTGTTTCCTTGGTGAGGTTCTCCTATTGAGTGTTTTCTTGTTCTAGAG TTGTTGTAATTTCTTCCACATAGTGAAAATCCCTTATCTATTGAGGGTTTTCCACGTAAATATTGTGTGTCAATTTTCTA TTCTTTCATCTCTTATTTTAGTTGTGTGACATTATCTTACTACTCTGGTACCCAACAATCGAAGCAGTTCAAACTTCAAA GTTGAAACTGAAGATGGAAGAGGCTACACAAAGGTAGCACTTATCCTTCGGAGCTGTCTTTGACATAATGACATCCTTGC TTTTTGGTTTATAACTCCCAACATCCTATTAAAATCTTATATTTTATTAGCCCTTTGCCTTCTCTATTTTTTTATTTTTA ACCTTTGGTGGTTGAGTTTATCAGGTATGCAGTTGTGACTGGAGCAAACAAAGGAATTGGATTAGAGATAGTTAAGCAGT TAGCTTCAGTTGGGATCAAGGTGGTGCTTACAGCAAGAGACCAGAGGAAGGGTCTTCAAGCTTTGAAAACACTCAAGGAC TCTGGTTTGTCTGACCTTGTAGTTTTTCATCAACTAGATGTGGCTGATGCTGCAAGTGTAGCTTCTCTGGCAGATTTTGT TGAATCTAAATTTGGGAAACTTGATATTCTGGTAACTAACATGCAATTTTTTTACCTCTTTCTTTTTCTTTTGTATTCTA TTTTCTCTTTAATTAGCCTTTTTCTATAACACTGCTCTGTAGCAGGTTTTGTTCAACATATGTGAATCAATTTTTGGGAT GATGCTACATATCCTAGCTTCTTCTGTGTACAACGCTGATCCAAGCACGCACTTTGTTGTGTGATTCTATAAGCATGCTT GTCATATTTAGAAATCAGTATTTGATTTAGTTGTTGAAGTTATCATAGTTTATTAGTTATATTTCTTACTGATCTTCCAG GACGGTCTCATCTCCAAACTACTTGTGTGTTTGTTCAAATCAATGCTAAGAATATTAAGATATTTTATATTTTTCTTTAT CTAGTGTAAACTGACTTTAGTATGTATTAGGTTGTGCCTTATTGTATTCTGTTACATTCTGTATTAAGCAGGCTTCAGTT TCCTTTTAGTCATCTTGATAGATTTATTGTTTCATATCCTGTTATTGGGCTATGATAGAAAAACTTTGGTACTACTGAAG AGTCAGTACTCCCTCTCTCAAACCTTCCACTTTTATTTTTTGAAAAAAATTAAATTGGGAATAGCTTACCATAAAGATCG GTGGGATCATTAGCACTGAAAAAAATTCTCAACATAGCTTTGAAGGAAATATCTTGGCTTATCATTTTTATGTTTACATG TTTTACTAATAAAAGTTAATCAATACAGGTGAACAATGCAGGGATTAGTGGAATTGTAATTAAAGATGATGATCTATACA AGTTAGCTATCTATGACCTTGGGGTAAGTATCTAGGTATGTCTGGTCTGGCATGTAGACAATAGATGATGATGATAGTTT AACTGTTCTCAGTTCTCACACTGTTTGTTAGAAAGGTTGTAATTGTTTAACTTTAGAAGCAAGGGTACATGCTTGGATCC AGTAAAAATTCACAGTGAACCAAAATCATAGGAAGTAACTTTTCTTAGCTTTTATGGGTGTCCACCGTGATTTTGAAAAT ATTCTATACTGAGTTGTCCTTACTTTTTCAGGCGTTATCAGAAGATGACCGGAATAAAGGGATTCCTCAAACGTATGAGT TAGCTGAAGAATGCTTGCAAACAAATTATTATGGTGCTAAAATAACTACGGAGTCCCTTCTACCCCTCCTACACTTATCT GATTCGCCAAGAATTGTGAATGTATCATCTTTCCTGGGGAAGTTAGAGGTAGGCTATCACTTCTTTCATCAATATATCCA AGGTTTTTGCATCAATTCTGACCAAGTAGAGGAAGATTAAACTAACTATTGGAGTGAAATCTTGCTTATATTGATCTAAA ATAGAGACTCAATCTTGACTAGTTTGTAGATTGAGTCATGTTGCCAAAACATTCATAAAGATCTCTTAAGTTATCACTGT CCTGCCTTCTTACTTTGCAAAAGTGTTTATTACTTATTGATGTCAATTTCAGTGTGTACCAAATGGATGGGCCAAAGGAG TATTGAGTGATGCTGATAATCTAACCGAAGAGACAGTGGATGGAGTATTGAAAAAGTTTCTCCAAGATTTCCAAGATGGT TCATTAGAAGGCAAAGGGTGGCCTAAGATTTTCAGTGCCTATATTATGTCTAAAGCTGCTATGAATGCCTATACAAGAAT TCTTGCCAGGAAATACCCCACTTTCTGCATCAACAGTGTTTGTCCTGGCTGGGTCAAGACAGATATAACTGCCAATAATG GCTTGTTAACTGTTGAAGAAGGTGCTGCTACTCCTGTGAGGCTAGCGCTGCTTCCCAATGGAAGTCCATCTGGCCTCTTC TATCACCGGGGTGAAGTGTCATCCTTTTGATTAGTAGTATAATTTTATGGAATGAAGCGACACCGCATAGAAAAGCTTTT TTTTAGTTGCACCAAGGTATCTTCTAGCCGATAGTTATGAGAATAATCATCTTAAGGCTTCGTTTGGATTGATGGAACAT AATGGAGCGGAGCGGAATGGAATATAATGGAACGGAATGGAGCGGAGCGGAATGGAATAAAAATTTCATTCCATTGTTTT GATATTTTATGACGGAGCGGAACAAAGTTACCACTGCGTTGTTTGGATAATGGACGGAGCGGAACGAGTTATAATTTTTA TTATTCCTATATTACCCTCATTTTAAAATAAAAGACAAGCTGAAAAAACAGTTAAAAATTGGTAGCCAATGTTCAATATC TTAAGATCTGGTGTGTCTAAATATTGAACATGAATGCTCCTATTTAGAGGCCAATATCACCAGCAACGTACAGACAAGGA CAAAAATGCAGCAACAATCACCAAAGGCAGTCCACCACTTGGACAAAGAGAAGAAGTCACAATGCCACAACGTACACCAC CGGCCATTGAAAAGAGAGATGCACACTAAGCAACCACAAGAACCACGTAATTAAGAGGCCAATATCACCCGCAACCGTAC AGTTGCAAACATTTGAAGAGCAACTATACTTGCAGAGTGTAAATAAATGTATATATATCTCCATGTCCTCACAATATATA AGAAAAAATCTAGTTGTAGTGATTATGTATGGAGGTTATCATGGGTAGAATGGTATTTTCATAATTTAATTAAGTGACCA ATTTTCCTTTTCATTCCTTTCCATCCAATTTGGGGGGGAGTAAATCTGATGGAATGTAATGGAGCATGATGGATGTTGGA CCATTACTTACCACTCCCTTCCATCCTATTTTAAATAAACCAAACAATGGACCCATCCCTCCCTCCCCTCCCTTCCACTC CACTCCCTCCTCCTCCATCAATCCAAACGAAGCCTAAGCCTCTGAGATCACATTAAATGCTTACGATCAACTGTATTGGA TCTTGTTGGTGCATAGAAAAGCTTTTACTTATCTATTATTGATAAGTGCCAAATTTACCTGATTTTCTATATTAATTTTG GCACTTATCTGTTCTAAATGTGTACGTTATTTTTCAAATTATCCCTCAATAAGGTTAATTTAGTAAGTAGATAGTTTGTA TATAGATAAATCTAAGATATGTTAGTTTTATCATTTAGACTCTTTGGTTTTTGTTGTAGGAGAAAAGTCAAGAAGATCCA ACCATTTGAAGATCAAAAGGGCTAAAAATATTGAAGTCCGCTTAAGCCAAATGTTTCCTCGCTTAAGCCAAATTACATGG CAGTAGCAGTGGTTCTGGAAGACAATTCGGCTTAAGCGAGAATTGGTCTCGCTTAAGCCAAAGACCTTACCTGAAGGTGA AGAAACCTGCTCGCTTAAGGACATCTTTATCAGCTTAAGCGAAACTGTTGCCCTGTTTTATAAAATGCTCGACCAGATCA GAATTGAGGCATCTCTTGACATATTTTGGACCTCTTAGAGAGAAAATTGCATAGAGAAGAAGGAAAGGAACTTT
CDS sequence (LotjaGi3g1v0378600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAGGCTACACAAAGGTATGCAGTTGTGACTGGAGCAAACAAAGGAATTGGATTAGAGATAGTTAAGCAGTTAGC TTCAGTTGGGATCAAGGTGGTGCTTACAGCAAGAGACCAGAGGAAGGGTCTTCAAGCTTTGAAAACACTCAAGGACTCTG GTTTGTCTGACCTTGTAGTTTTTCATCAACTAGATGTGGCTGATGCTGCAAGTGTAGCTTCTCTGGCAGATTTTGTTGAA TCTAAATTTGGGAAACTTGATATTCTGGTGAACAATGCAGGGATTAGTGGAATTGTAATTAAAGATGATGATCTATACAA GTTAGCTATCTATGACCTTGGGGCGTTATCAGAAGATGACCGGAATAAAGGGATTCCTCAAACGTATGAGTTAGCTGAAG AATGCTTGCAAACAAATTATTATGGTGCTAAAATAACTACGGAGTCCCTTCTACCCCTCCTACACTTATCTGATTCGCCA AGAATTGTGAATGTATCATCTTTCCTGGGGAAGTTAGAGTGTGTACCAAATGGATGGGCCAAAGGAGTATTGAGTGATGC TGATAATCTAACCGAAGAGACAGTGGATGGAGTATTGAAAAAGTTTCTCCAAGATTTCCAAGATGGTTCATTAGAAGGCA AAGGGTGGCCTAAGATTTTCAGTGCCTATATTATGTCTAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCCAGGAAA TACCCCACTTTCTGCATCAACAGTGTTTGTCCTGGCTGGGTCAAGACAGATATAACTGCCAATAATGGCTTGTTAACTGT TGAAGAAGGTGCTGCTACTCCTGTGAGGCTAGCGCTGCTTCCCAATGGAAGTCCATCTGGCCTCTTCTATCACCGGGGTG AAGTGTCATCCTTTTGA
Protein sequence (LotjaGi3g1v0378600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEATQRYAVVTGANKGIGLEIVKQLASVGIKVVLTARDQRKGLQALKTLKDSGLSDLVVFHQLDVADAASVASLADFVE SKFGKLDILVNNAGISGIVIKDDDLYKLAIYDLGALSEDDRNKGIPQTYELAEECLQTNYYGAKITTESLLPLLHLSDSP RIVNVSSFLGKLECVPNGWAKGVLSDADNLTEETVDGVLKKFLQDFQDGSLEGKGWPKIFSAYIMSKAAMNAYTRILARK YPTFCINSVCPGWVKTDITANNGLLTVEEGAATPVRLALLPNGSPSGLFYHRGEVSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 298 | 298 | 4.4E-164 | – | |
| PANTHER | 1 | 298 | 298 | 4.4E-164 | – | |
| Gene3D | 2 | 298 | 297 | 4.1E-93 | – | |
| SUPERFAMILY | 7 | 284 | 278 | 8.21E-50 | ||
| CDD | 7 | 298 | 292 | 2.13696E-90 | – | |
| Pfam | 8 | 172 | 165 | 8.1E-27 | ||
| PRINTS | 8 | 25 | 18 | 1.4E-23 | ||
| PRINTS | 84 | 95 | 12 | 1.0E-9 | ||
| PRINTS | 84 | 95 | 12 | 1.4E-23 | ||
| PRINTS | 154 | 170 | 17 | 1.4E-23 | ||
| PRINTS | 160 | 168 | 9 | 1.0E-9 | ||
| PRINTS | 223 | 242 | 20 | 1.0E-9 | ||
| PRINTS | 223 | 242 | 20 | 1.4E-23 | ||
| PRINTS | 242 | 259 | 18 | 1.4E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0378600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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