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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0379400 |
| Transcript ID | LotjaGi3g1v0379400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase family protein; TAIR: AT3G61220.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9M2E2|SDR1_ARATH (+)-neomenthol dehydrogenase; TrEMBL-Plants: tr|A0A151TQR5|A0A151TQR5_CAJCA (+)-neomenthol dehydrogenase; Found in the gene: LotjaGi3g1v0379400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77216712..77219710) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTCCCTATTGAATACGGAACTTAAAATTCCGTACTATATTTAAGCATGCGTGTCACATTTTCAACCACTCATTATAT ACTAAAACAGATACGGAATTTTATTTTCCGTATTGATACGGAACTTTAAATTCCATATTTAATAAAGTGGGGTGCAAAGC CTAAGGGGTGGGGCACCAAACTCAATTCCCAGTTAAAGCTCATACTCGAACTTGTCCTAACCCATTTGACTATACAATAA ATATTTTGGTCAAACCAGCCTTTTCTTTCATTCTTAAGGAAAGTGATCTTCCATTTCTTTTATAGTTGTCATCAATCATC ATCCTATTTAAATAATACCCTCCTCTCTCTTGTTCACTCATCCATCCATCCATCCATCCATACATACATACATTCATTCC AGATTCAACATCTAACTATGGTATTGGTAATGGCAGACAACACAAAACAAAGGTACTTTTTGGTTCATGTTCTGGGCCAA CCATGTTCTATGTATGTCTGTGTTAACATTTTGCTGACTTTTATTTTCAGGTATGCTGTTGTAACAGGTTCTAATAAAGG GATAGGATTTGAGACTGTGAAACGGTTGGCCTCTAATGGAATCAAGGTGGTGCTCACAGCCAGAGATGAGAAGAGAGGGA TTCAAGCTGTTGAGAGATTGAAAAGCTGTGGTTTCTCCTCTAGCCTTGTGGTTTTTCACCAGCTTGATGTCACTGACCCT GCTAGTATTGCATCCTTGGTTGATTTTGTGAAGACTCAATTCGGGAGACTTGATATCTTGGTAAGAAGAATTTGCTGACA CACTGAATATTCTGAAATCTGAATTCTGGTTCATTTTTATATTTTCTACTTTCTCTTTTCTCTGTTTGATGAATTAATAT AAAAATGATAATGCTTTGGGATCCATTGCGCCCCCACTTAAAAATGATAATGATTATAAGCATAATCATTGTGCCCCCAC TTTGTTTGTTGTTCCCTTGAATATTATGATTCTCAACGAACCATTTGTCTGGTGAATCTGTATATTCAGGAAATTTTCCT GTTCTTTCATATCTTCTCAATCACTCAATTCTCTATGGATCTCTTGACCTATGGTTGTTCCCTTGAATAGTTTCTCTATC TATCATAAACCCCTTAAGCTTGGAAACACACAGAACAGCATGTGGTCTGAGTCCACTTTTCAATTACTATGCCCGGATTT TCCTGATATTAGATTTCATTGACATGGTTGACCAGTGATCTTAAACATTTCTCTATCAGAATGAACAAAGTTTATGCGCT TGATCCATAATACTTATTCCTTTTCAATTGATCTGCAAAATAAATGAACTCAGCCCGATCAATGAGTTCAGACAAACCAA TTGATTTAGGCCCTATTTGGTTGACCTTATTTGAGCTTATCTTATAGCATAAGCGCTTGCGCAAGTGTTTGAGAATTGAG CTTATTTTCATAAGTTGCTCAAATTAGCTTATGAATAAGTGTTTATACCCACCTATAACTTATTTTGAACTTATTTCAGT AAGCTTCTCAAATTAGCTTATGCCATAAGTGCTTATTGAAAAATCTCAATGAGTTCACCAGAGTTATAACCTGGATTTTT CATTTCTCTTTTCAATTACATGAATGACTCATGAATTCCAAATTCACATGATGCAGGTGAACAATGCAGGAATCAATGGG TTCAACACACATGATATGGTGAGTGGACATGTTTTCTTCACTCCCTTCACTCTTGTGTGGTCTATCCACATAAAACTAGT AAAGCCTCTGAAAACTGACCTTGGTTTCTTGTTCATGAATGTAGGTGGGACAAACAATCAAATGGAGGGAACTGCCTCAA ACTTATGAAATGGCTGAAAACTGCCTAACAACAAATTACTATGGTGTTCAACAAACAACTGAGGCTTTTCTTCCTCTTCT TAAGTTATCCGGCTCACCCGTGATTGTTAATGTTTCCTCTGAAGCAGGGCTACTAAAGGTACAGGAACAACAGAACTATT ATTATTGTTGTTGAATTCTTTCAGCAAATGATTATGCATAACCTCAACAACATTGAAAAATTTATGTTATGCTGTGTTTC AGTATATATCAAACGAATGGGCTAAGAGGGTGCTTGAAGATACTGAATTTCTTACAGAAGAGCTAATAGATGAGGTATTA AAGGTGTATATGAAAGACTTCAAGCATGGCTCACTAGAACATAAGGGCTGGCCAACCTACCTGTCTGCTTATAAGCTCTC AAAAGCAGCTGTGAACACCTACACAAGGCTTATGGCCTATAAGCATCCAAAATTGTGCATTAACTGTGTTTGCCCTGGTT TTGTCAAAACAGACATGAACAGAAACACAGGAAGCTTATCTGTAGAAACAGGTGCTGCTAGTGTTGTGAGATTAGCACTG TTGCCAAATGGTTCCCCTTCTGGATACTTCTTTGCTAGCCAAGATGTGTCTAGCTTTTGAGTGATTTTTAGAGTATTTCC ATTCTTACTGATCACATAGAGGAAAAAAATGAAAGGATGTGTGTCTTGTCTTGTACATAATTTTTACCCATCATTCTATT TTTGCGACATAATGAAAGGAGGGGAATAATACGTCTTAGTTTGCTCTCCTCACATTTTTTTTGTACTTCAAATGGTCATT TCCAATTGGTAATGCTCATTAGTCTAACAAAAACATTATTGCTTAGGTAATAAAATAAAGTACCCTAAACTTTAAACCCA AACAAAGACTACAGCCCTTGGAGGGAGTCCCTGAGAATCAAGGTCACTCAGCAAGCGGCCTCTCAAAAACCTGAACCCCA ACTTCAAAGAGCGGGCACCATACTTTGTTAAGCAATTCGCTGGGGCATTACAAATTTACAATCGCGATAGACACGACGAA ACTGCACCACCCAATCCCTCTACAGGATCTCAGTAGTGAGTAGTGACATTCAACAGCGGCACAATCAAAATAGTTTTTTT TTCTTCCAATAACTTGATTTCAGTTTTTTTTAAATATTG
CDS sequence (LotjaGi3g1v0379400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATTGGTAATGGCAGACAACACAAAACAAAGGTATGCTGTTGTAACAGGTTCTAATAAAGGGATAGGATTTGAGAC TGTGAAACGGTTGGCCTCTAATGGAATCAAGGTGGTGCTCACAGCCAGAGATGAGAAGAGAGGGATTCAAGCTGTTGAGA GATTGAAAAGCTGTGGTTTCTCCTCTAGCCTTGTGGTTTTTCACCAGCTTGATGTCACTGACCCTGCTAGTATTGCATCC TTGGTTGATTTTGTGAAGACTCAATTCGGGAGACTTGATATCTTGGTGAACAATGCAGGAATCAATGGGTTCAACACACA TGATATGGTGGGACAAACAATCAAATGGAGGGAACTGCCTCAAACTTATGAAATGGCTGAAAACTGCCTAACAACAAATT ACTATGGTGTTCAACAAACAACTGAGGCTTTTCTTCCTCTTCTTAAGTTATCCGGCTCACCCGTGATTGTTAATGTTTCC TCTGAAGCAGGGCTACTAAAGTATATATCAAACGAATGGGCTAAGAGGGTGCTTGAAGATACTGAATTTCTTACAGAAGA GCTAATAGATGAGGTATTAAAGGTGTATATGAAAGACTTCAAGCATGGCTCACTAGAACATAAGGGCTGGCCAACCTACC TGTCTGCTTATAAGCTCTCAAAAGCAGCTGTGAACACCTACACAAGGCTTATGGCCTATAAGCATCCAAAATTGTGCATT AACTGTGTTTGCCCTGGTTTTGTCAAAACAGACATGAACAGAAACACAGGAAGCTTATCTGTAGAAACAGGTGCTGCTAG TGTTGTGAGATTAGCACTGTTGCCAAATGGTTCCCCTTCTGGATACTTCTTTGCTAGCCAAGATGTGTCTAGCTTTTGA
Protein sequence (LotjaGi3g1v0379400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLVMADNTKQRYAVVTGSNKGIGFETVKRLASNGIKVVLTARDEKRGIQAVERLKSCGFSSSLVVFHQLDVTDPASIAS LVDFVKTQFGRLDILVNNAGINGFNTHDMVGQTIKWRELPQTYEMAENCLTTNYYGVQQTTEAFLPLLKLSGSPVIVNVS SEAGLLKYISNEWAKRVLEDTEFLTEELIDEVLKVYMKDFKHGSLEHKGWPTYLSAYKLSKAAVNTYTRLMAYKHPKLCI NCVCPGFVKTDMNRNTGSLSVETGAASVVRLALLPNGSPSGYFFASQDVSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 292 | 290 | 2.9E-93 | – | |
| PANTHER | 5 | 292 | 288 | 2.3E-166 | – | |
| PANTHER | 5 | 292 | 288 | 2.3E-166 | – | |
| SUPERFAMILY | 12 | 278 | 267 | 3.86E-52 | ||
| CDD | 12 | 292 | 281 | 2.82998E-85 | – | |
| PRINTS | 13 | 30 | 18 | 2.0E-23 | ||
| Pfam | 13 | 169 | 157 | 3.6E-31 | ||
| PRINTS | 90 | 101 | 12 | 2.0E-23 | ||
| PRINTS | 90 | 101 | 12 | 1.8E-8 | ||
| PRINTS | 148 | 164 | 17 | 2.0E-23 | ||
| PRINTS | 154 | 162 | 9 | 1.8E-8 | ||
| Pfam | 207 | 258 | 52 | 6.6E-7 | – | |
| PRINTS | 217 | 236 | 20 | 2.0E-23 | ||
| PRINTS | 217 | 236 | 20 | 1.8E-8 | ||
| PRINTS | 236 | 253 | 18 | 2.0E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0379400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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