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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0379900 |
| Transcript ID | LotjaGi3g1v0379900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase family protein; TAIR: AT3G61220.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9M2E2|SDR1_ARATH (+)-neomenthol dehydrogenase; TrEMBL-Plants: tr|I3SA17|I3SA17_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0379900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77250454..77254165) extracted from Lotus japonicus Gifu genome v1.2.
CATTCTCCTGTCATGATCTGTATCATACTTAGTGACAACCTTCGTAAGAACTACCTAGTAGGCTGTAGCAACGTCGAGAT TAGCCAAATCGGTCTGCTCCAAATCATGGGCGTGGGTGGTTTTGGGCAAGTCCAACAATGATGTACAAAATTCGACAATA ACCACAACAATCCATTGGTAATAAGAAGTTTCTGACGTTCAAATAATTGTGGGTACTTTTTTTTTAGAGGCAAATGTTAA TTATTAGTAAATTGTGGGTACTTCACTCCTCGGTAATTATTACCCACGGTTTCGGAAACAACTTTTACTTTTTTTTCTTT TAAAAGACAAATTTTAAATATTGTTTATGAAAACTGTTTTTAAATATAGAAAACTAAAATAGAAATCAAATAAGCCCTTA GATTTCTTTTTAATGCACAAGTCCTTAAATTAAATTAAAACATTATTTATTCCATAATGAATACAGTAAAAATCTTGAAA CACCTAACATTTATAGCTTGTTTTTCGTCCACTCATTTGCAGGCCTTTCCTTCTTTGATGAGCAATGGCAGAAGCAACAG CAAGGTATAATTTTCCTTAGCCTCCCATTCTTCAACGTACTATTTCATGATTCATGACTTCATGTGTTAACTAGTTGAGC TGGTTTCAAGGTATGCGGTTGTGACAGGAGCAAACAAGAGAATAGGATTTGCAATATGCAAGCAATTGACTTCTGAAGGT ATCACTGTGGTGCTGACAGCAAGAGATGAGAAGAGAGGTCTTGAAGCTGTTGAGAAACTCAAAGGGCTTGGTCATGTGAT TTTTCATCAACTTGATGTCACTGATCCTGCAAGTATAGGATCATTTACACATTTCATCCAGACCCGTTTTGGAAAGCTCG ATATCTTGGTAGCAAAATTCTCTCTTGCCTTTTGATTTTTTTGTGTTTCTGATCTTATATATCATCAACCTTTGTTGCTT CTTTTCAAGGACTCATACATAAAAGATTTGCTGATCATGATCAATCTGGTTACATTTTAAGTATTCATGGCATGTTTGGA TCAGTTTCTTTTTTAAGAATCAATTCTAAAATCTTGAAGCTAGTCATATAGGCTTCTCCTCAGAACCCTCTAATAGGAAT AGCTTATTTTATAATATAAGCGCTTAGACAGGTGTTTGAGAGAGAGCTTAGGTGATAGCTTATGACCTTACATATGTGCT TCTCACATCTTGCAAAATTAACACCGAATATAGTTCTGATTTCTGAATATGATGCATCCTTGATTCTGCAAGCAGCTTTC ATTTTTCATGTGTCCTGTTTTGTATTTATGAAGTGTCTGAGTCTGAGTTTCATTGATGTATACCTCGTCACTAATTACAA TTGAAAATTATAAGCTATATTTCTGCTTTTGTTTGAGGGATTTCTTTCATAATTTTTGCCATTTGTGAATATATAGCTAC TAGTTCAACTTGGATGACCATAAAATATTTGAATCTGGGAAAAAAAAATTAGGTGAACAATGCTGGAATCTCAGGAGCAC ATGTGGAGGAGAGTGAGGCTTTGGTTGCTGCAAATATTTTGGTATGATTTTTTTACCCCAAAAACTTCAGATAAAACACA AGGCAGTGACTATTTGCACCTCCTATTTTGCTAAGTGCGTCATCCCCAAAACTGAAAAAAGACCAAAATACCCTTCAGTA ATTTAAATTAAAAAAAAACTACCTTATCTTTCCCTACAAACCCTCCCCCTCTTTCAACCGTATAACCCCCCTCTTCCTCT CCAACCCAATTTCAAAATTTTCAACCCTCACAAAATCAAGTCTCTCAAACCCACATTAACCATGGGAGGTTGTATTTTGT CATTTTGTGTCTTCATTCAGTCCCTCGATTTGATTCTGTCATGGGAGGATGTTTCGTGACTTGCCCGCACTCTAAACTGC GGACAGGTTTTATGACTACCGCATGTTTAAGTGCGGTTAGCCTGCGGATGGTCAATTTTTTTTAATTCTCTCTGAATTTG CCTTCCGCAATTTATTATTCCAACACATCATGTTCCGCACTTTTAAGTGCGGGAAAATCAATTTTATTTAGGAGCAGTAC CAGACCTTAACACGATTGAAATGACTAAGTTTTTCACTTCCGTTAACAAGTTAGCGGAAGGTATAAATTTCACACTTCCG CACTTATGTTAGCGGGAGCGTGTAATTTGTTTCACTACCGCATGTTTAAGTGCGGGACTAACCAGTTACGTCGGGAAGTC GCGAAATCGCGATGAAAGCTAAAAAAAGCTGAAAAAAAGCTCGAAAAAAGGTAAAAACTTACATGGATAAGCTTCTATTC TTGACTTGAGATCACCCAAAAAAAGTTGGGAGTGGAGGATTAAGAGGAGGGTGAGGAGGAAGAAGGAGATGGTGTGTGGG AAGTAAAAATAAAATATTATCTTTTTATGTTTTTTTTACTAAGGGCAATGTTGGAATTTTTAAAAAAGGAGATGACGGAC TTAGTAAAACGGGAGGCGCAAATAGTCACTCCCAAAACATAATTATGGTGAATAACATTTTTCATCTATAAAGAAAGAGA CAACATAACTTCGATTAACAATTAAAAATTTCAGGTCGTGCTCCCTCATCAACTCATTCAAAAACAAATGAAAAGTTTCT TGTTTTCTATTGCAGGAAAACGGTGGCCAAATTGATAGTAGAAAAATATTTACTGAAAACTATGAATTAAGTGAAGCATG TCTTAAAACAAATTACTATGGAGTCAAGGAATTAACCAAAGCATTAATTCCCCTTCTCCAGTTTTCAGGCTCCGCCAAAA TCGTCAATGTTTCCTCATCCATGGGAAGGCTTGAGGTATGTGACACTGACAACTCTTGTTAATGTTACTAGCTTTGGTAA CTAAACTGGAAACATGATTTTTTTTTAATTTAAATTGCAACTGGATATGATGTCTTAAATTGACTAGTTCTTTTAATTGA TTTAGTATGTATGTTAGTTCTATATTAGTCCAACTTAAGATTATGCTTATTTTCACCTTTGTAACTGTTTTGCAGAATAT GCCAGATGCAAGGCCTAAAGAAGTGCTAAATGATGTTGAAAACCTCACAGAAGAAAAGATTGATGAATTTCTGAGTGAAT TTCTAAAGGATTTTAAAGAGGGTTCACTAGAAACCAAAGGGTGGCCTCATAGCGCATCTGCGTATAGAATCTCAAAAGCT GCTCAGAATGCCTACACAAGGATTCTAACCAAGAAATACCCTTTATTCTGCATCAATGCTGTTTGTCCAGGTCATGTGAA AACAGATATTACCTACAATACAGGCCTTCTAACACCTGATGAAGGTGCTGAAGCTGCTGTCAGGTTGGCACTGTTGCCCC ATGGTAGTAGTCCTTCTGGCCTTTTCTTCTTTCGAAGTGAAGAGAAACCATTTTGATCAAGGATTAGTTGTGGCATGAAA ACAAAATCTTGGTTAAAGTAATAATGCATAGTGTTATTGTATAAACACGTTTAGACACTCTTGTGACTTGAGTCATGTAA ACGAAAATAACGAATTGTGTAAGCAATGATGTTCATTATAGTCAAAATTGTTTTGAGTTGTGCTTAATAAATGAAGTTAC GCTGGAATTGATGTGTTAAGTGTGCTTGATTTCTGCAAAATATGACCATGAAAGGAAAGATAGAATGCATAGAAAATAAG TACTATCTCAGTTCCAAAATGTTTGTTTATTT
CDS sequence (LotjaGi3g1v0379900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAGCAACAGCAAGGTATGCGGTTGTGACAGGAGCAAACAAGAGAATAGGATTTGCAATATGCAAGCAATTGAC TTCTGAAGGTATCACTGTGGTGCTGACAGCAAGAGATGAGAAGAGAGGTCTTGAAGCTGTTGAGAAACTCAAAGGGCTTG GTCATGTGATTTTTCATCAACTTGATGTCACTGATCCTGCAAGTATAGGATCATTTACACATTTCATCCAGACCCGTTTT GGAAAGCTCGATATCTTGGTGAACAATGCTGGAATCTCAGGAGCACATGTGGAGGAGAGTGAGGCTTTGGTTGCTGCAAA TATTTTGGAAAACGGTGGCCAAATTGATAGTAGAAAAATATTTACTGAAAACTATGAATTAAGTGAAGCATGTCTTAAAA CAAATTACTATGGAGTCAAGGAATTAACCAAAGCATTAATTCCCCTTCTCCAGTTTTCAGGCTCCGCCAAAATCGTCAAT GTTTCCTCATCCATGGGAAGGCTTGAGAATATGCCAGATGCAAGGCCTAAAGAAGTGCTAAATGATGTTGAAAACCTCAC AGAAGAAAAGATTGATGAATTTCTGAGTGAATTTCTAAAGGATTTTAAAGAGGGTTCACTAGAAACCAAAGGGTGGCCTC ATAGCGCATCTGCGTATAGAATCTCAAAAGCTGCTCAGAATGCCTACACAAGGATTCTAACCAAGAAATACCCTTTATTC TGCATCAATGCTGTTTGTCCAGGTCATGTGAAAACAGATATTACCTACAATACAGGCCTTCTAACACCTGATGAAGGTGC TGAAGCTGCTGTCAGGTTGGCACTGTTGCCCCATGGTAGTAGTCCTTCTGGCCTTTTCTTCTTTCGAAGTGAAGAGAAAC CATTTTGA
Protein sequence (LotjaGi3g1v0379900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEATARYAVVTGANKRIGFAICKQLTSEGITVVLTARDEKRGLEAVEKLKGLGHVIFHQLDVTDPASIGSFTHFIQTRF GKLDILVNNAGISGAHVEESEALVAANILENGGQIDSRKIFTENYELSEACLKTNYYGVKELTKALIPLLQFSGSAKIVN VSSSMGRLENMPDARPKEVLNDVENLTEEKIDEFLSEFLKDFKEGSLETKGWPHSASAYRISKAAQNAYTRILTKKYPLF CINAVCPGHVKTDITYNTGLLTPDEGAEAAVRLALLPHGSSPSGLFFFRSEEKPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 295 | 295 | 2.8E-141 | – | |
| PANTHER | 1 | 295 | 295 | 2.8E-141 | – | |
| Gene3D | 2 | 295 | 294 | 1.9E-88 | – | |
| SUPERFAMILY | 7 | 280 | 274 | 8.11E-49 | ||
| CDD | 7 | 295 | 289 | 3.65215E-89 | – | |
| Pfam | 8 | 168 | 161 | 4.4E-27 | ||
| PRINTS | 8 | 25 | 18 | 5.7E-21 | ||
| PRINTS | 81 | 92 | 12 | 1.5E-8 | ||
| PRINTS | 81 | 92 | 12 | 5.7E-21 | ||
| PRINTS | 150 | 166 | 17 | 5.7E-21 | ||
| PRINTS | 156 | 164 | 9 | 1.5E-8 | ||
| PRINTS | 219 | 238 | 20 | 5.7E-21 | ||
| PRINTS | 219 | 238 | 20 | 1.5E-8 | ||
| PRINTS | 238 | 255 | 18 | 5.7E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0379900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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