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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0383100 |
| Transcript ID | LotjaGi3g1v0383100.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT4G00480.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8W2F1|BH012_ARATH Transcription factor MYC1; TrEMBL-Plants: tr|D7UPI5|D7UPI5_LOTJA BHLH transcription factor LjTAN1; Found in the gene: LotjaGi3g1v0383100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77705361..77709833) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTGCCTGGAAAAGCACTAGAAACTGGTGAAACAGTGTGGCTATGCAATGCTCAGCAGGCAGATAGTAAATTTTTCTC TCGTTCTTTGCTAGCAAAGGTTGGATTTTATTCATAAATTTGATATTTTGGTTTTCATATTATATGATGTACGGACAATG TAAGGTTGATGATATAATATGTGGTCCAACCTTGGATTTGGCTCAGTGGGGTAAACATCAATGGGTTTTATGATGCTCAA TTTCGTCCTGTAAGCATTGAGCAAGTTGGTCTCTAGAAGAAATAAATATCTTTCGCAGTCTTTGATTGTATCAAATGTTG GTCAAAAAGTTCTTACGACTAGATAAAATGTAAGCTAACTTGACCAACATTTAGCACAATTAGGTACCATGAGGATTTGT CTATCTTTTAGAGACTAACTTGCCCAACGTTTACACAACGTTTACACTTTCAGGAATGAAATTGACCATTAACTCAATTT TTAAAATTTACTAGATTTTAATTTTTCATATAGTAATTTACTATCCATAATTTTTGGTTTTTAATTCATTCACACTTCAC TTTATCTTCTATTTCATTTGCGTATACTTTTTGTTTCTGTCTCTCATATTTTCTTATCGCACCACTTATCATATCATTAT TTTTTTTTTTCATACGGTATGACTGACTTCAATCCTTTTCAACAATTTTCTTTTCTTTTTCATGTGGACATGGGTTTCAA TTGCTGTATCCAGAGTGCCTCTATTCAGGTATGACATTCTCTCTACAACCTTTTCTATCTAAGGTTAAAAATGGTATTTT GTTAGTCGGCATTTGGTTAAAATAACTTAATTAAGTGCTTATGAGCTTAAAATATAATTGAAGTGCTTATGATGACGAGC GATTATGACAACAAGTTACATATATTTTGACAAACCTATGGAAATATGCTAAAATTATTTGAAAAACTTATTGAAATATG CTCAAAATGTATTGCAAGTAAACCCTTATTCATAAGCTAATTTAAATTTCTTATGAAAATAAGTTTAAAATAACTTGTAG ATAGGCCAAAAGCTATTTAAATATTTTCTTTCAACTACTTGTATAAGTGTTTGTGCTATTCCACAGAAACTAACTTGAAG TTGGTGGTAAATATTGGGGTTATTTGGGATTGTGATTATGTCTTAACTAAAAAGGTGAAACAAAAGTAAAATGCAAAAGT GAGCTATCTTCAAGGCAAGGGCTGAGTATAGATATTGTGATTTGTACCCTATCCCATATTCTAACTTTACCTTATGACAG AAGCATAGATATTAACATTCATACTGTGTGGTGTGTGCTAAAACCTGTTTTTCAGACAGTGGTGTGTTTTCCCTATCTTG GAGGTGTCATTGAGATAGGAACAACTGAACTGGTAATTTCTGTGTTCTTCTTCCATAAGCTAGTTCCTATATGTTTTCAA TATTAGTTAATACTTCTTAATTTGCTTATCTTGTTTGTAGGTATCTGAGGATCCTAATCTCATTCAACATGTGAAGGCAT GCTTCTTAGAAATCTCAAAGCCTACATGTTCTGATAAATCATCCTCTGCCCATGACAAACCACATGATGACAACAAATAT CCAACATGCACCAAGGGTGACCATGAGGTTTTAGACAAAATTCCCATGGAGAACTCATGTTCCTTTGCAGAAGAACTCAA ATTTGATGAATATCCTGGCAGGGAGTTACAAGATGATGATAACAATGAAGATTGTGACATGGATGGATTCTCTGATGGTG GTTGTGATCATTATGAATCCATGATAGAGGGCATCAACGAGGGTGGTTCTTCTCAAGTTCATTTTGTGAATGAAGGTGGT GACATCAATGGTGCCCCAGATTCCTCTAGTTCTTGTGATTGTAGGTCTGAGGCTTCTGAGAACCATGGTAAGAAGGATTC TAAAAATGTAATCCAAATTCAACAAAAGGAGCTTCAAGACTGTGATGATAACTCAAAAAGTAGCTCTTTGGATATTGGAG CTGATGAAGTTTTGTACTACACAAGAACTCTCTGTGCTGTTCTGGGAAATTCATCAAGTTTTGCACAAAATCTATGTGCA AGTAAATCTAGTTTTGTGAAATGGAATAAAGGAGGAGTTTCTGAAAGGAAGTGGCCGCGGTTGCAACAAATGATGTTAAA GAAGACTTTGTTTGATGTCCCTTTTATGCACCTAAGTTGCTCCTCTCTCAAATTACAAAAAGAAAATGGAAGAAAAGAAT GGACTTCTAAATTGGAAAATGCTGATAATTTCATGGGGAATGTCTTCTCTGATAAGAAAAGAGAATCTAGAAACATTCAG GTACTCAAATCTGTGGCTCCTTCTGCATGTGAGGTATTGACTTATCATCTGCTGAAATTAATGTTATCACTCGATGAGTG ATGTGGCTGGAAATTGCATGCTACAATGCTAATGGCCTAATTAATCTTAAATCTTTAGTTATTTCGTATAGGTCCAAGTA TAAATTTTTTACACTCATCACATGAAGTTATTTAGCAATAGTGTCCTGTTCTGTTCTGAAATTTTATTTATTTAGGAATA TCAAAGTTCAATCTCAAAAAGCAGTGAAACATGTTAAGGAACCAGTTGTTATGTTTGTAAATTTGACAGATTTAGACTCT TTTTAGCAATTTCTAAATGATGTCATATGTAGTAAGAAGTTAACAAAACCCTTGAAGTTACTTTGTAAATATTGAAATAT ATTCATGTTAATTGCTAACTATGTGAAGGTGGAGAAGATTTCAGTTCTTGGTGACACAATTCAATACTTGAAAAAGCTTG AGGCAAGAGTGGAAGAACTAGAATCTTACATGGACACTACAGCTACTGGAGCAAGAACCAGAAGAAAATGCCCAGATGTG CAAGAGCAGATATCAGATAACTATGGCCCCAGTAATATTTACATGGGAATGAAAAAATCTAGGATAAACAAGAGGAAGGC TTGTGATATTGATGACATAGACACAGGGCTAGACATGATTGTTTCTGAAGAAGATAAGCCATTGGATGTGAAAGTCAACA TGAAGGAGGAAGAGGTTCTGATTGAGATGAAATGTCCTTACAGGGAATACATATTGTATGATATCATGGATGCCATAAGC AATCTGCATATAGATGCACACACAGTTGATTCATCAACAGCTGATGGTGTTCTCACATTTAAACTTAAATCCAAGGTTTG TCCTTCTAACTTTTTACTAATTTTAGGGTAAGTGTAAGCTACATTTCTATGATACAAAAAACAAAAGCCTTATCCCAGAA AGTGAGGTCTGCTATCTGAATCACCCGACACCACTGCGCCTGAGAAAAAACCAAATTTTATGGAATATTATTGACATGTG ATCACTTTTAATAATGTATTCCAACGTTGTTTTTGGCTTCCCTCTACCCCATTTCCCAGGACTTGAAGAAACCATGTAAT CAACCCTTGTCTCGATGCCTCCAAAAGTCTTCTTTGTAAGCTACATGCCTATAACTGCTAAAAGAATTCTTCCAAAAAGT AGCATGTTTAAGACCTTGTTCCAAGTTATCTCAGTCAACCTGTTTTGAGGGGGCATTCTAACCATTTGTTACTTAACCCT AGCTTGAAGGGAAGAGAAGAGCATGTTACTCATGGACTAAGACATTATCAAAAAAGATTTTGACCATTGAAAGTCATTTA TTTAATGAGTAATTTGAAAAATTATACTTGGAAGTTAGTTTTCTTTTCTTTAATACTTGAAAAGAAATTTGAATTCTTAA AACTTCATTTCAGTTTCGAGGAGCAGCAACTGCGCCAGTGCGGATGATCAAAGAAGCACTCTGGAAAGTATCTGGAAAGA TTTGAAATGCCTGATTGAGTGTCTCATGGAAGTAGTAGATTCTTCTAATTCAACAATTTCATCTTTGTAACTCTAGAACA GTGATTACCTTCCTAACAAGCATGTCTTATTGTGTGAATCTTGATTTTGGCTATTTTGCTTAACTTCCTAACTGGGATTC TGCAGTTTAATTACTATCAGGTTTGAATTACTTCAGTCCATCTTTTATCATGAATTTGTGTGATTTCTGTTTGCTGTTGC TGCCAGCATCATATAACTGACTGTTTCCTTGTTTAGAAAGTGGAATTTGAATGTATGGTTCCAATGTGGTGGTGCCTGAA AACCTTTTCAGGTGATGTTCCAAGGAGCAAACATAAAGTTTATATTTCTAGTTTGAAACCTGTGAAATGTATCTATCAGA GAAACATCTATCTGAAGAGATTTTATCCATAGTTTGTTGGATCTATTTAGTGTGGATTTGCTATTGCTGTGAATTGTTTT AGTGTATGCTTGGAAATTCTTCTACAATCAATTCTAATGCTCATATCAATTTTAGTCAGAAGTTTTTATGAGTAGCTTCT AAATGCCAGAGTTGATTCTGAGGAAAACTAAACTAATCCAATGCTATTGTAATTCTTTACAATGGCACCAATT
CDS sequence (LotjaGi3g1v0383100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACTCATGTTCCTTTGCAGAAGAACTCAAATTTGATGAATATCCTGGCAGGGAGTTACAAGATGATGATAACAA TGAAGATTGTGACATGGATGGATTCTCTGATGGTGGTTGTGATCATTATGAATCCATGATAGAGGGCATCAACGAGGGTG GTTCTTCTCAAGTTCATTTTGTGAATGAAGGTGGTGACATCAATGGTGCCCCAGATTCCTCTAGTTCTTGTGATTGTAGG TCTGAGGCTTCTGAGAACCATGGTAAGAAGGATTCTAAAAATGTAATCCAAATTCAACAAAAGGAGCTTCAAGACTGTGA TGATAACTCAAAAAGTAGCTCTTTGGATATTGGAGCTGATGAAGTTTTGTACTACACAAGAACTCTCTGTGCTGTTCTGG GAAATTCATCAAGTTTTGCACAAAATCTATGTGCAAGTAAATCTAGTTTTGTGAAATGGAATAAAGGAGGAGTTTCTGAA AGGAAGTGGCCGCGGTTGCAACAAATGATGTTAAAGAAGACTTTGTTTGATGTCCCTTTTATGCACCTAAGTTGCTCCTC TCTCAAATTACAAAAAGAAAATGGAAGAAAAGAATGGACTTCTAAATTGGAAAATGCTGATAATTTCATGGGGAATGTCT TCTCTGATAAGAAAAGAGAATCTAGAAACATTCAGGTGGAGAAGATTTCAGTTCTTGGTGACACAATTCAATACTTGAAA AAGCTTGAGGCAAGAGTGGAAGAACTAGAATCTTACATGGACACTACAGCTACTGGAGCAAGAACCAGAAGAAAATGCCC AGATGTGCAAGAGCAGATATCAGATAACTATGGCCCCAGTAATATTTACATGGGAATGAAAAAATCTAGGATAAACAAGA GGAAGGCTTGTGATATTGATGACATAGACACAGGGCTAGACATGATTGTTTCTGAAGAAGATAAGCCATTGGATGTGAAA GTCAACATGAAGGAGGAAGAGGTTCTGATTGAGATGAAATGTCCTTACAGGGAATACATATTGTATGATATCATGGATGC CATAAGCAATCTGCATATAGATGCACACACAGTTGATTCATCAACAGCTGATGGTGTTCTCACATTTAAACTTAAATCCA AGTTTCGAGGAGCAGCAACTGCGCCAGTGCGGATGATCAAAGAAGCACTCTGGAAAGTATCTGGAAAGATTTGA
Protein sequence (LotjaGi3g1v0383100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENSCSFAEELKFDEYPGRELQDDDNNEDCDMDGFSDGGCDHYESMIEGINEGGSSQVHFVNEGGDINGAPDSSSSCDCR SEASENHGKKDSKNVIQIQQKELQDCDDNSKSSSLDIGADEVLYYTRTLCAVLGNSSSFAQNLCASKSSFVKWNKGGVSE RKWPRLQQMMLKKTLFDVPFMHLSCSSLKLQKENGRKEWTSKLENADNFMGNVFSDKKRESRNIQVEKISVLGDTIQYLK KLEARVEELESYMDTTATGARTRRKCPDVQEQISDNYGPSNIYMGMKKSRINKRKACDIDDIDTGLDMIVSEEDKPLDVK VNMKEEEVLIEMKCPYREYILYDIMDAISNLHIDAHTVDSSTADGVLTFKLKSKFRGAATAPVRMIKEALWKVSGKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 16 | 396 | 381 | 3.9E-113 | – | |
| PANTHER | 16 | 396 | 381 | 3.9E-113 | – | |
| MobiDBLite | 63 | 81 | 19 | - | – | |
| MobiDBLite | 63 | 93 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0383100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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