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LotjaGi3g1v0383100.2

Overview

Field Value
Gene ID LotjaGi3g1v0383100
Transcript ID LotjaGi3g1v0383100.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Basic helix-loop-helix transcription factor; TAIR: AT4G00480.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8W2F1|BH012_ARATH Transcription factor MYC1; TrEMBL-Plants: tr|D7UPI5|D7UPI5_LOTJA BHLH transcription factor LjTAN1; Found in the gene: LotjaGi3g1v0383100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:77705361..77711575) extracted from Lotus japonicus Gifu genome v1.2.

AGATACATGCACTTCTGACGATACCAGCAGTTTGTGGTGGTTAGACAAATTTTATGAAAGAAAAATAATAATTCTACATT TTGTGGCGGTTTACAGGTTCATGTAAATATCACTCTCAATGATTCAGCTGGGATTTCAATTTCTTCGCTGCTATTGTTTT TGTAGTAACATAATAAATACACTTGACTTGGGTACACATGATTACTCTATACACTGAAAGTAACTAAAGTGAATTTGAGC AGTGTTGTAATGCCGTTTACTGTTGAGTGTCTGAAAGTAAACAAGCAAAGGTATCTTCATCTTTTTCTTATCCCTCTTCT TTTATAACAAAAAAGGTAAGTAAATATTGAATGAAAGTGACTGTGGCAGCAGCTAGCAGGAGAACAATGGCCATTGGGAG CCCAAAGCATGAGAAGAAGATGCAGGAAAAGAACCTGAGTGCACAACTAGCTGTTGCAGTCAGAAGTATTCAATGGAGCT ATGGAATTTTCTGGGCACCTTCAACCACTCAACAAAGGTAGGTATATACATGTACATATTTATAAAAAATAAAAAAAAAC ATCTTGGAGTTTTGTTAATTTGCTTCATTCACTTAACCAGCCTCTGGATCTCTAGTTGTGTGAAGAAGTGCCACATGTTG ATGTGGGAGGGAACTCTTGAGAGTTTCTGCTTTTTTATGCAACAAAAATAGAATGTTATCTGCAGAGTCAACGGTTATGA TTTCAGATGAAATTAAAGATCTTTTTCCCTTCACAAATACATAGAGGGAGCTCAGTCCCAGAATTCCTGGAGGAGTTTTC ATGACATTAGATTGGAGTCAAAATGAAAAAATATGTAAATTATTTCAGATTTTTTCTCATTTTAGACACAAGTAATAAAG GGCAAATCTGATGCTACTAAGGAAGGGTCATACTCACTTCGTGGATCTAATGTAGACAACCTAACCTTATATTTTTGTAA GAGGTTGATTCCGTGTCTCGATCCTGTGACTGCAAAATCAACAGTGTGCTGAGGCTCGCCCTCTGAAAAAGTAAATGGAG CTGAACATTTATAAATTTAGACACTCAAAGAGGGGAGGAGACTCCTGAGACATCATTTTTCACTATATCTCTCTCTTTTT ATTTACTCAATGAGTGTCTGTTGCATGTCTGCACTGTGCAGATGTGTACGGATTATTTTTCTTTGTGATGAAATTGGAAA CTTGATGCATTTCCATTGAAGAAACAAATAACTGGGAAAAAAACAGATAAATGCAAATGAGATACAGGTTAATGTTATGT AATTAATAATTATGTGCATGAGAAATAGGTCACTTTGATCAGCTTGGTACTCAACCAATGTTATGTGAATGGTGTGATAA ATAAGCAGAGAACTGGAATGGAGGGATGGGTACTACAATGGAGACATTAAGACAATGAAGACAGTGCAAACCATGGAAAC TAAGGCTGATAAAATAGGCCTGCAGAGGAGTGAACAACTGAGAGAACTATACAAGTTTCTTCTTGTAGGTGAAGCTGACC CACTAGCTAAAAGACCTTCTGCTTCATTATCTCCAGAGGATCTCTCAGATTCAGAGTGGTATTACTTGGTTTGCATGTCC TTTGTGTTCTACCCCAACCAAAGGTACCATATATGCTCTAATTTCATTTAATTCATATAAGGGATTAATTAATGTTTTGT TTCTTTATCAATTTTTCTAGTTTTTTATATTTAACTAAGTTGGGTTTTTCTTTTCTTCTCACAGTTTGCCTGGAAAAGCA CTAGAAACTGGTGAAACAGTGTGGCTATGCAATGCTCAGCAGGCAGATAGTAAATTTTTCTCTCGTTCTTTGCTAGCAAA GGTTGGATTTTATTCATAAATTTGATATTTTGGTTTTCATATTATATGATGTACGGACAATGTAAGGTTGATGATATAAT ATGTGGTCCAACCTTGGATTTGGCTCAGTGGGGTAAACATCAATGGGTTTTATGATGCTCAATTTCGTCCTGTAAGCATT GAGCAAGTTGGTCTCTAGAAGAAATAAATATCTTTCGCAGTCTTTGATTGTATCAAATGTTGGTCAAAAAGTTCTTACGA CTAGATAAAATGTAAGCTAACTTGACCAACATTTAGCACAATTAGGTACCATGAGGATTTGTCTATCTTTTAGAGACTAA CTTGCCCAACGTTTACACAACGTTTACACTTTCAGGAATGAAATTGACCATTAACTCAATTTTTAAAATTTACTAGATTT TAATTTTTCATATAGTAATTTACTATCCATAATTTTTGGTTTTTAATTCATTCACACTTCACTTTATCTTCTATTTCATT TGCGTATACTTTTTGTTTCTGTCTCTCATATTTTCTTATCGCACCACTTATCATATCATTATTTTTTTTTTTCATACGGT ATGACTGACTTCAATCCTTTTCAACAATTTTCTTTTCTTTTTCATGTGGACATGGGTTTCAATTGCTGTATCCAGAGTGC CTCTATTCAGGTATGACATTCTCTCTACAACCTTTTCTATCTAAGGTTAAAAATGGTATTTTGTTAGTCGGCATTTGGTT AAAATAACTTAATTAAGTGCTTATGAGCTTAAAATATAATTGAAGTGCTTATGATGACGAGCGATTATGACAACAAGTTA CATATATTTTGACAAACCTATGGAAATATGCTAAAATTATTTGAAAAACTTATTGAAATATGCTCAAAATGTATTGCAAG TAAACCCTTATTCATAAGCTAATTTAAATTTCTTATGAAAATAAGTTTAAAATAACTTGTAGATAGGCCAAAAGCTATTT AAATATTTTCTTTCAACTACTTGTATAAGTGTTTGTGCTATTCCACAGAAACTAACTTGAAGTTGGTGGTAAATATTGGG GTTATTTGGGATTGTGATTATGTCTTAACTAAAAAGGTGAAACAAAAGTAAAATGCAAAAGTGAGCTATCTTCAAGGCAA GGGCTGAGTATAGATATTGTGATTTGTACCCTATCCCATATTCTAACTTTACCTTATGACAGAAGCATAGATATTAACAT TCATACTGTGTGGTGTGTGCTAAAACCTGTTTTTCAGACAGTGGTGTGTTTTCCCTATCTTGGAGGTGTCATTGAGATAG GAACAACTGAACTGGTAATTTCTGTGTTCTTCTTCCATAAGCTAGTTCCTATATGTTTTCAATATTAGTTAATACTTCTT AATTTGCTTATCTTGTTTGTAGGTATCTGAGGATCCTAATCTCATTCAACATGTGAAGGCATGCTTCTTAGAAATCTCAA AGCCTACATGTTCTGATAAATCATCCTCTGCCCATGACAAACCACATGATGACAACAAATATCCAACATGCACCAAGGGT GACCATGAGGTTTTAGACAAAATTCCCATGGAGAACTCATGTTCCTTTGCAGAAGAACTCAAATTTGATGAATATCCTGG CAGGGAGTTACAAGATGATGATAACAATGAAGATTGTGACATGGATGGATTCTCTGATGGTGGTTGTGATCATTATGAAT CCATGATAGAGGGCATCAACGAGGGTGGTTCTTCTCAAGTTCATTTTGTGAATGAAGGTGGTGACATCAATGGTGCCCCA GATTCCTCTAGTTCTTGTGATTGTAGGTCTGAGGCTTCTGAGAACCATGGTAAGAAGGATTCTAAAAATGTAATCCAAAT TCAACAAAAGGAGCTTCAAGACTGTGATGATAACTCAAAAAGTAGCTCTTTGGATATTGGAGCTGATGAAGTTTTGTACT ACACAAGAACTCTCTGTGCTGTTCTGGGAAATTCATCAAGTTTTGCACAAAATCTATGTGCAAGTAAATCTAGTTTTGTG AAATGGAATAAAGGAGGAGTTTCTGAAAGGAAGTGGCCGCGGTTGCAACAAATGATGTTAAAGAAGACTTTGTTTGATGT CCCTTTTATGCACCTAAGTTGCTCCTCTCTCAAATTACAAAAAGAAAATGGAAGAAAAGAATGGACTTCTAAATTGGAAA ATGCTGATAATTTCATGGGGAATGTCTTCTCTGATAAGAAAAGAGAATCTAGAAACATTCAGGTACTCAAATCTGTGGCT CCTTCTGCATGTGAGGTATTGACTTATCATCTGCTGAAATTAATGTTATCACTCGATGAGTGATGTGGCTGGAAATTGCA TGCTACAATGCTAATGGCCTAATTAATCTTAAATCTTTAGTTATTTCGTATAGGTCCAAGTATAAATTTTTTACACTCAT CACATGAAGTTATTTAGCAATAGTGTCCTGTTCTGTTCTGAAATTTTATTTATTTAGGAATATCAAAGTTCAATCTCAAA AAGCAGTGAAACATGTTAAGGAACCAGTTGTTATGTTTGTAAATTTGACAGATTTAGACTCTTTTTAGCAATTTCTAAAT GATGTCATATGTAGTAAGAAGTTAACAAAACCCTTGAAGTTACTTTGTAAATATTGAAATATATTCATGTTAATTGCTAA CTATGTGAAGGTGGAGAAGATTTCAGTTCTTGGTGACACAATTCAATACTTGAAAAAGCTTGAGGCAAGAGTGGAAGAAC TAGAATCTTACATGGACACTACAGCTACTGGAGCAAGAACCAGAAGAAAATGCCCAGATGTGCAAGAGCAGATATCAGAT AACTATGGCCCCAGTAATATTTACATGGGAATGAAAAAATCTAGGATAAACAAGAGGAAGGCTTGTGATATTGATGACAT AGACACAGGGCTAGACATGATTGTTTCTGAAGAAGATAAGCCATTGGATGTGAAAGTCAACATGAAGGAGGAAGAGGTTC TGATTGAGATGAAATGTCCTTACAGGGAATACATATTGTATGATATCATGGATGCCATAAGCAATCTGCATATAGATGCA CACACAGTTGATTCATCAACAGCTGATGGTGTTCTCACATTTAAACTTAAATCCAAGGTTTGTCCTTCTAACTTTTTACT AATTTTAGGGTAAGTGTAAGCTACATTTCTATGATACAAAAAACAAAAGCCTTATCCCAGAAAGTGAGGTCTGCTATCTG AATCACCCGACACCACTGCGCCTGAGAAAAAACCAAATTTTATGGAATATTATTGACATGTGATCACTTTTAATAATGTA TTCCAACGTTGTTTTTGGCTTCCCTCTACCCCATTTCCCAGGACTTGAAGAAACCATGTAATCAACCCTTGTCTCGATGC CTCCAAAAGTCTTCTTTGTAAGCTACATGCCTATAACTGCTAAAAGAATTCTTCCAAAAAGTAGCATGTTTAAGACCTTG TTCCAAGTTATCTCAGTCAACCTGTTTTGAGGGGGCATTCTAACCATTTGTTACTTAACCCTAGCTTGAAGGGAAGAGAA GAGCATGTTACTCATGGACTAAGACATTATCAAAAAAGATTTTGACCATTGAAAGTCATTTATTTAATGAGTAATTTGAA AAATTATACTTGGAAGTTAGTTTTCTTTTCTTTAATACTTGAAAAGAAATTTGAATTCTTAAAACTTCATTTCAGTTTCG AGGAGCAGCAACTGCGCCAGTGCGGATGATCAAAGAAGCACTCTGGAAAGTATCTGGAAAGATTTGAAATGCCTGATTGA GTGTCTCATGGAAGTAGTAGATTCTTCTAATTCAACAATTTCATCTTTGTAACTCTAGAACAGTGATTACCTTCCTAACA AGCATGTCTTATTGTGTGAATCTTGATTTTGGCTATTTTGCTTAACTTCCTAACTGGGATTCTGCAGTTTAATTACTATC AGGTTTGAATTACTTCAGTCCATCTTTTATCATGAATTTGTGTGATTTCTGTTTGCTGTTGCTGCCAGCATCATATAACT GACTGTTTCCTTGTTTAGAAAGTGGAATTTGAATGTATGGTTCCAATGTGGTGGTGCCTGAAAACCTTTTCAGGTGATGT TCCAAGGAGCAAACATAAAGTTTATATTTCTAGTTTGAAACCTGTGAAATGTATCTATCAGAGAAACATCTATCTGAAGA GATTTTATCCATAGTTTGTTGGATCTATTTAGTGTGGATTTGCTATTGCTGTGAATTGTTTTAGTGTATGCTTGGAAATT CTTCTACAATCAATTCTAATGCTCATATCAATTTTAGTCAGAAGTTTTTATGAGTAGCTTCTAAATGCCAGAGTTGATTC TGAGGAAAACTAAACTAATCCAATGCTATTGTAATTCTTTACAATGGCACCAATT 

CDS sequence (LotjaGi3g1v0383100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAACTCATGTTCCTTTGCAGAAGAACTCAAATTTGATGAATATCCTGGCAGGGAGTTACAAGATGATGATAACAA TGAAGATTGTGACATGGATGGATTCTCTGATGGTGGTTGTGATCATTATGAATCCATGATAGAGGGCATCAACGAGGGTG GTTCTTCTCAAGTTCATTTTGTGAATGAAGGTGGTGACATCAATGGTGCCCCAGATTCCTCTAGTTCTTGTGATTGTAGG TCTGAGGCTTCTGAGAACCATGGTAAGAAGGATTCTAAAAATGTAATCCAAATTCAACAAAAGGAGCTTCAAGACTGTGA TGATAACTCAAAAAGTAGCTCTTTGGATATTGGAGCTGATGAAGTTTTGTACTACACAAGAACTCTCTGTGCTGTTCTGG GAAATTCATCAAGTTTTGCACAAAATCTATGTGCAAGTAAATCTAGTTTTGTGAAATGGAATAAAGGAGGAGTTTCTGAA AGGAAGTGGCCGCGGTTGCAACAAATGATGTTAAAGAAGACTTTGTTTGATGTCCCTTTTATGCACCTAAGTTGCTCCTC TCTCAAATTACAAAAAGAAAATGGAAGAAAAGAATGGACTTCTAAATTGGAAAATGCTGATAATTTCATGGGGAATGTCT TCTCTGATAAGAAAAGAGAATCTAGAAACATTCAGGTACTCAAATCTGTGGCTCCTTCTGCATGTGAGGTGGAGAAGATT TCAGTTCTTGGTGACACAATTCAATACTTGAAAAAGCTTGAGGCAAGAGTGGAAGAACTAGAATCTTACATGGACACTAC AGCTACTGGAGCAAGAACCAGAAGAAAATGCCCAGATGTGCAAGAGCAGATATCAGATAACTATGGCCCCAGTAATATTT ACATGGGAATGAAAAAATCTAGGATAAACAAGAGGAAGGCTTGTGATATTGATGACATAGACACAGGGCTAGACATGATT GTTTCTGAAGAAGATAAGCCATTGGATGTGAAAGTCAACATGAAGGAGGAAGAGGTTCTGATTGAGATGAAATGTCCTTA CAGGGAATACATATTGTATGATATCATGGATGCCATAAGCAATCTGCATATAGATGCACACACAGTTGATTCATCAACAG CTGATGGTGTTCTCACATTTAAACTTAAATCCAAGTTTCGAGGAGCAGCAACTGCGCCAGTGCGGATGATCAAAGAAGCA CTCTGGAAAGTATCTGGAAAGATTTGA 

Protein sequence (LotjaGi3g1v0383100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENSCSFAEELKFDEYPGRELQDDDNNEDCDMDGFSDGGCDHYESMIEGINEGGSSQVHFVNEGGDINGAPDSSSSCDCR SEASENHGKKDSKNVIQIQQKELQDCDDNSKSSSLDIGADEVLYYTRTLCAVLGNSSSFAQNLCASKSSFVKWNKGGVSE RKWPRLQQMMLKKTLFDVPFMHLSCSSLKLQKENGRKEWTSKLENADNFMGNVFSDKKRESRNIQVLKSVAPSACEVEKI SVLGDTIQYLKKLEARVEELESYMDTTATGARTRRKCPDVQEQISDNYGPSNIYMGMKKSRINKRKACDIDDIDTGLDMI VSEEDKPLDVKVNMKEEEVLIEMKCPYREYILYDIMDAISNLHIDAHTVDSSTADGVLTFKLKSKFRGAATAPVRMIKEA LWKVSGKI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 27 27 -
PANTHER 16 407 392 1.8E-122
PANTHER 16 407 392 1.8E-122
MobiDBLite 62 93 32 -
MobiDBLite 62 81 20 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0383100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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