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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0387300 |
| Transcript ID | LotjaGi3g1v0387300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT1G01490.4 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|O03982|HIP39_ARATH Heavy metal-associated isoprenylated plant protein 39; TrEMBL-Plants: tr|I3SX72|I3SX72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0387300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78353620..78354500) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTACAGAAGTTTGTGCTCAAGTTAGATTTGCATGATGACAAGGACAAGAAGAAGGCCCTGAAAACAGTTTCAACTCT GACAGGTACCAATTCTGTCATTATTTTAGCCTCACTTTGGATTTTTCTTCCACTGAACTCTCTTAATTTGATTGGATTAG AGGAAGTGAAAAATGAGCAGTGGTTAGTTTTGATTGGATTGGCCTCCTTCACATTTTAAGTTCTAGTTGATTTTTTTGCT AATCTTTCCTTGGAATCAATTTTGAATTTCTGATGCTACTCATACAAGCTTCTTCTCAGAATTTATTTTGGTTTTAGAAT CAGCCATAGAAGAATTTCAAACACACACTTATTTTATGTTTGAAGTTATAGTTGCTAATTTTTTTTTCTTTGCTACAGCA ATTTCCAGATAAAGAAACACATTTGTTCTCTCCAAGTTTTCCTTTTTCTAAAGTAATTTTGAAATCAAAAAAAATCTGAA CAATCTAATTGTGCAACCTATTAGGTATTGATGCCATCTCCATGGACATGAAAGAGAAGAAATTAACAGTGATAGGAACA GTGGATCCAGTTACTGTGGTTAGCAAATTGCGCAAATACTGGCAGACAGATATAGTAGCAGTAGGACCAGCCAAAGAGCC AGAGAAGAAGAAAGAGGAGCCCAAGAAAGAAGAGGCCAAGAAGGAAGGAGAAAAGAAAGAGGAACAGAAGAAGGAAGAGG GGAAGAAGGAAGAATCAAAAAAAGAAGAGAAGAAAAAAGAACCTGCCCCAGATCCTGTTTTGGAGCTGGTCAAGGCTTAC AGGGCTTATAATCCATACATGACCACACACTACCATGTACAAAGCATGGAAGAGAATCCCAATGCCTGTGTCATTTGTTG A
CDS sequence (LotjaGi3g1v0387300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATGAAAGAGAAGAAATTAACAGTGATAGGAACAGTGGATCCAGTTACTGTGGTTAGCAAATTGCGCAAATACTG GCAGACAGATATAGTAGCAGTAGGACCAGCCAAAGAGCCAGAGAAGAAGAAAGAGGAGCCCAAGAAAGAAGAGGCCAAGA AGGAAGGAGAAAAGAAAGAGGAACAGAAGAAGGAAGAGGGGAAGAAGGAAGAATCAAAAAAAGAAGAGAAGAAAAAAGAA CCTGCCCCAGATCCTGTTTTGGAGCTGGTCAAGGCTTACAGGGCTTATAATCCATACATGACCACACACTACCATGTACA AAGCATGGAAGAGAATCCCAATGCCTGTGTCATTTGTTGA
Protein sequence (LotjaGi3g1v0387300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDMKEKKLTVIGTVDPVTVVSKLRKYWQTDIVAVGPAKEPEKKKEEPKKEEAKKEGEKKEEQKKEEGKKEESKKEEKKKE PAPDPVLELVKAYRAYNPYMTTHYHVQSMEENPNACVIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 119 | 119 | 3.6E-46 | – | |
| PANTHER | 1 | 119 | 119 | 3.6E-46 | – | |
| Gene3D | 1 | 34 | 34 | 7.3E-6 | – | |
| MobiDBLite | 34 | 86 | 53 | - | – | |
| MobiDBLite | 36 | 85 | 50 | - | – | |
| Coils | 49 | 80 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0387300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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