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LotjaGi3g1v0389100.1

Overview

Field Value
Gene ID LotjaGi3g1v0389100
Transcript ID LotjaGi3g1v0389100.1
Lotus japonicus genome version Gifu v1.2
Description Cysteine desulfuration protein SufE; TAIR: AT4G26500.1 chloroplast sulfur E; Swiss-Prot: sp|Q84W65|SUFE1_ARATH SufE-like protein 1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072VGX0|A0A072VGX0_MEDTR Fe-S metabolism associated protein SufE; Found in the gene: LotjaGi3g1v0389100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:78613554..78619082) extracted from Lotus japonicus Gifu genome v1.2.

ACCTATCATTAAACTCCACGAAAAAAAACAGTGAAGAAACCAACGTTGTTCTCTCTCTCTCTCTCTGTTACAGTCGCAGT TGTTGAAACTGCGATACTTGCAACCATGTCCACAAGTTCGATTTGCTCGTGTTCATTCCGATTGGTGGCAACCCGAATCC CAGTTTCCCTCTACGACAAAACCCCACTCTTCAAAACCTCAACGTTCCTCACAAAATCCATCTTCTCCATCAAACCCATC ACCTTCCAGCGAATTCCAACCAAACCATCAGCATCATCATCATCACCATCACCATCATCACCCACTTCCCTGCAACCCAT TGAAGAGCTTCCTCCGAAGCTCCAAGAAATCGTGAAGCTCTTCCAATCGGTGCAGGAACCCAAAGCCAAGTACGAGCAGC TCCTATTCTACGGGAAGAATCTCAAACCCCTCGATTCCCAGTTCAAGAGCAAGGAGAACAAGGTTGAAGGTTGCGTTTCC CAGGTCTGGGTCCGTGCTTACCTTGATCAGGAGAAGAATGTTGTGTATGAAGCTGATTCTGATTCTGTCCTCACCAAGGG GCTCGCTGCGTTGCTCGTTCAGGGATTGTCGGGTCGACCCGTTCAGGAGGTTATTCGGGTCACGCCGGACTTCGCGGTGC TTCTTGGGTTGCAGCAGAGTTTGACCCCTTCTAGGAATAATGGGTTTTTGAATATGCTCAGGTTGATGCAGAAGAAGGCG CTTATGCTCTATGTTGAAGATGAAAAGGGTGCTGAATTGAACTCACCTGGAAATTCTGAGGTGAAGGATGATAGTTTTGT TGAGAATTCAAGTGGGGGGCACAGTTCTGAAATTGATAATTCAGAGACTCCATCATCTTCACCTTCATCATCACCATCAT TACCCAATTCAGATGGTGGTGAATTGGGTGGTAGAGGGAGGAGGATCAAGGAGAAGATGGAGAAGGAGCTTAATCCTGTT GAGTTGCAAGTTGAAGATGTATCGTATCAGCACGCGGGGCATGCGGGTGTTAGAGGGAGTGATGGGGAGACACATTTCAA CCTTAAAGTGGTGTCTGCAGAGTTTGAAGGGAAGAGTTTAGTTAAGAGGCACAGGCTCATATATAGCCTGCTGCAAGAGG AGTTGCAGTCTGGATTGCATGCCTTGTCAATTGTGGCGAAGACACCTTCTGAAGTCAGTTAAGGATGAAAATGAACTATG CAGGAAGAGAGGTCAAAATTTTCTCCTTTGGCCCTATTGGTTTTGAGGATGTGTTCATTTTGCTTATATTGAACCAAACC ATACTTATCTGTTGGAAATTAGAATACTTGTTTTGGTTAACCATAGCATTTTATGTCAAAACAGTGATGGATAATTTGAT GCTTATGGGTTTTTCAATGATTTAAGGGTTTGTGTAAAGTTATACAATTCAAATATATAAATCCAGACTTCTGGCAGCTG AGGTGAGGCTGCTAAGCATGATTTGAGTGAATGTAACTTTGTATTGGTCATTTTACTTTCTGTGTCAAGGCTTATTTATC ATTGAATAGAGGTCCTAGCTGTCACAGTTGTTATGTGATTATGAGTTAGAGTTCTCTTGTTGGTAAAAAAGCACAAAAAA GATGCTAGATTGTCACAATGTGTGATTCCCCCATTGTCTATTATCATTTACAAACTTATAATTAGAAATAAAAAGAAAAC CATAGAGTTAGTATTTTTGGGCATTTAGCCCCTTTGTTACATATCAAAAAAGGATGTAAATGTGTTGTGGGTGTGAGAAA TAGGGGGGAGGGTGAGTAAAACTTTGTGGTTTTCTTTCGGTTAAGTCTCGTTTTCCCATCTTGGTAGGTGCAAAGTTGTA GTGCTTATAATTTGATTTTCTCTTAATATTATGTTCTTCTTATCCATGAATAAATGGATAGTATTTTGAAATTTTAGCCA CAGTTTGTTTTTTTAACATTTGGAAATTGGAGCATTATACATTATAGATTTTAGAATGAAATGTTAAACTCTGGTTGATT GATATGTTATTATCTTGCTGTGCCAGTGAGAAATTGTATCACTAACTTACTAGATATTTAGCATTTATTACAGCAATGCT GGAAAATTTTATGAGAAAATTGACAGGGGGAGAAAAAAAGTTCCCAGCTGTGATAAAGTTGCATTGAACAGATTATGGCA TACTATCATGAGTAAATTACATTAGTTTATGAAACCTTTAAAAAAATCTCCCTTTGGTTTTCCACATATTACATTGACCT CCCTTGATATTGTTAATTACACCTGTACAGAATTGTATAAAATTTGTGCAGGCGGTCTATATGTCAGTGGAAAAAATTAA ACCACGGGAATCAATCTGGTGAAATTCAAACGAGAGGAAGTAAGTGCAATTTGTTCTATTATCATCTATTGCTTTGACAA GTCTTTTATTTGTTGAGTTTACATTATCATGTAATGGTGAATTCAGGCTGAGGAGTTTTAGGTACTAACCTCTCTCTCTC TCTCCCTCCCTCCCTACTTGCTCCTTCAAAAGAGAATCTTTGATATTGGAAGGTATTATCCCCCCTTAAAAGACTTTCAG CTGGGATATATGAAACACAGGGTGGATCTTGGAAACGTCTTGGAATTTCTACCAATATGCAACTGTTCCAACCTTGGAAA CCTCTTGGAATTTCTACCAATATGCAACTGTTCCAACCTTGGCTAGTATTTGTAAAGGCCCAAAAATATTTGGTGTCAGC GTTTGATATACATTCTTAGAGATGGATTTTTTCCTATCACCTTCAAATTTACCTAATCCCCAACATTGAACTACGAGTCC CTCCTGTTCCTACTATCCATTTCGCACATGTAATTTTGTGCTCTGGGTAAATTGTATTTGAGTTTCCTGAGGACCTCATC TCTGTCCAATAACCGTTGAGCAACTGCCTCTACCATGGTTTCACCTTGCACAAGCTTGAGAACGTTTGGGGTTTCCTGCC AAAAGCTACCTCAAAAGGGTTAAAAACCTGATAGTATTTGGTGTTATACCAATATTCAGCCCAAGTTATCCATGAAGACC AATCTTTTGGTAGCTCTGACGAAAAACATTGCAAATGTGTTTCTAATTGGTCACTAGTTTAGAATCTCTGACTGGCCATT AGTTTCTGGATGATGCAGTGCTCATTCTTAGGACAGTTCCCTGCATCCTAGAAAGTTTCTTCCAAAAATGGCTCATCGGA AGCGGATCTCTATCAATGACAATTGAGTTGGGTACCCCATGTAGTTGCACTATGCACTTTAGAAATAATTCAGCTACTCT CTTTGCTAAATAGGGATGTTTTAGCTGAAGAAAATGACCATATTCAGTATTCGATCCACCACCACTAGCACAACACTGTA CCTTTTGACTTCAGATGGCCTGTTATGAAATCCATGCTCGATTCCTCCCAAATCACCTCCGGAATTGGTAGAGTTTGAAT CAATCTGCAGACTATGTGGGGTGGTATTTCTGTCATTGGCACATATCACATGCTGCCACATAACTAGTAACCAATCCTTT CGTTCCCGCCCAGTACTTATTGGTGGTTGCTACTGACTAGTTTTTTATAAGTGATGTAGACCCATGAATGCCCCTTTAGG TATGTTGTGAAATTTTCCAATGAGAGTTAGTCTGGAAAGAACAGCGGCCTCCCATGCTCGGATGCTCCCATGTATAAGAG GACCGGGAGTTTGGGTCAGCAAGAAGGTCCTCTATAATCTTGGACAACTTTAGGAGAGTATTTTCTTGCGGAGTATCCAT CTACTATGAGTATGAACCCATTTGATCCCAAAGTTACACATTTCTTAATTATTTTGATAATATTATCTACAAACTTTAAG TGAGTAAAAATAGGAATTCTTCTAAATAATTCAATACAAGATTTGTAGCCTGAAACCAGCAAATATGACAGCATCTGCTG CCAAGATAAAGAAATAAGGGCACAATGGGTTCCCTTGTCCCTTTGTGAAGACTGAAGACCCCTTTGGGGGGTTTCTTCTT GCCGAGAGCTCCATTGACTTTGAACTCATTTAACCTCAAAGTAACACATCTTATAACTATTTGGACTCATTAAGGATCAA ACCCAAAAGCCTGAAAACATAGATTGAGAAAATCACATTCTAGACTATCACATGCTTTACTTAAATCAGCATGATGGCCA TCTGAGCATCTTTTGCCGTAGCCTTCTTAATTTTGCACATGAACTGCATATGGGCTTCAATTTTATTACTTATATTTACA GGCTGCAGTCTATCCGGTGTGCTCGCTTTCTGAGCTTTGGGAAGGTTCCTTCCTCCTCACCTTGAGTCCATTGACTGCAA GTCATTATTGTTTTGGGTGTTATTTTCTATACTTATTCTGGTTGCATTTTGAAAGGAACATCTATTGAAGAACTTAGCTG TTTGATGTCCATGATTAACTTATCAGAAAAACCTTTATAAACATGCTGCTCTTTAAATGATCTACTATATTTGACTCTGT TTTGTATCAACATGTATATCTCTTCTTATCTCCTTTCAATTTGGCTTCTGCCCATCTTAATTTTGGATGCAATTTACATT ACAATCAAGTGTACGAGCTTGTAAATGAAAGGAAGTAAATGCCCAAGATGCTATTCATATTAATATTACACACACACAAT GACACAATACATTTGTAGTCTAGTGGTACGACAATGAGAGTAGTGTCTTCAGCACACAGTAAAAATAATTGTTGAGTGAT CCATAACCTTTGATTTGATTGCTCAGTATCTTGTTTATCTCTTTTACTTTTTATAATAATGCATTTGATTTCCCCTTCAT TAGTCTCAACTTTCACATACACATATACACAGCAAGGTGCGAGTAGATATTGACAAAGTGGTTGTCTCCTTTGTTCATTT AATTTTCAAAACTTATTTGGAAGAAATAACATTTTCTTTATTCTAGCAAATTCCCATATATCTAATTGTGCATTCATTCT TGAAGTTTTACAATACAATTTTTTTCAATTTCAATTTGCATGAGGCTTGCAATTTTATTAAAAGAAAAATATTTAGAAAA GGAAAATAAAAGCCTTTCAACAAATGATGAAATGAGAGCAGGTTGGAAGACAATGTTATAAAGATAAAAGAAAATGGATA AATAAAATCTTGAATATTGATCTTAATCTCTACTTGTCCCATAGCAAAATAACATGTCTTGTATATACCGAGAGCGATGG TGTTAAAATGTTGAATTTGGTTACAAGATAATATTAATTACTTAAGTGAGGAGAAAATGAATATTATAGAAAACAGAAAT GCTAAGTTGATGTTATCGTATTTTAAACTATACCACCAACTTCACACTTATCTTGATTTCGTCTTTAGATTAGTTCTGAT ATAAATTTTCACAAAAAAATGTAATTCTCAAACTACCACCCTTGACATTAGTTTTCCAAACCTATCTCGACATGGACCAC TGATTTCGTCTTTAAATTAGTTCTCAGATAAATTTTCACAAAAAAAGTAATTCTCAAACTACCACCCTTGACATTAGTTC CAAACCTAT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0389100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCACAAGTTCGATTTGCTCGTGTTCATTCCGATTGGTGGCAACCCGAATCCCAGTTTCCCTCTACGACAAAACCCC ACTCTTCAAAACCTCAACGTTCCTCACAAAATCCATCTTCTCCATCAAACCCATCACCTTCCAGCGAATTCCAACCAAAC CATCAGCATCATCATCATCACCATCACCATCATCACCCACTTCCCTGCAACCCATTGAAGAGCTTCCTCCGAAGCTCCAA GAAATCGTGAAGCTCTTCCAATCGGTGCAGGAACCCAAAGCCAAGTACGAGCAGCTCCTATTCTACGGGAAGAATCTCAA ACCCCTCGATTCCCAGTTCAAGAGCAAGGAGAACAAGGTTGAAGGTTGCGTTTCCCAGGTCTGGGTCCGTGCTTACCTTG ATCAGGAGAAGAATGTTGTGTATGAAGCTGATTCTGATTCTGTCCTCACCAAGGGGCTCGCTGCGTTGCTCGTTCAGGGA TTGTCGGGTCGACCCGTTCAGGAGGTTATTCGGGTCACGCCGGACTTCGCGGTGCTTCTTGGGTTGCAGCAGAGTTTGAC CCCTTCTAGGAATAATGGGTTTTTGAATATGCTCAGGTTGATGCAGAAGAAGGCGCTTATGCTCTATGTTGAAGATGAAA AGGGTGCTGAATTGAACTCACCTGGAAATTCTGAGGTGAAGGATGATAGTTTTGTTGAGAATTCAAGTGGGGGGCACAGT TCTGAAATTGATAATTCAGAGACTCCATCATCTTCACCTTCATCATCACCATCATTACCCAATTCAGATGGTGGTGAATT GGGTGGTAGAGGGAGGAGGATCAAGGAGAAGATGGAGAAGGAGCTTAATCCTGTTGAGTTGCAAGTTGAAGATGTATCGT ATCAGCACGCGGGGCATGCGGGTGTTAGAGGGAGTGATGGGGAGACACATTTCAACCTTAAAGTGGTGTCTGCAGAGTTT GAAGGGAAGAGTTTAGTTAAGAGGCACAGGCTCATATATAGCCTGCTGCAAGAGGAGTTGCAGTCTGGATTGCATGCCTT GTCAATTGTGGCGAAGACACCTTCTGAAGTCAGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0389100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTSSICSCSFRLVATRIPVSLYDKTPLFKTSTFLTKSIFSIKPITFQRIPTKPSASSSSPSPSSPTSLQPIEELPPKLQ EIVKLFQSVQEPKAKYEQLLFYGKNLKPLDSQFKSKENKVEGCVSQVWVRAYLDQEKNVVYEADSDSVLTKGLAALLVQG LSGRPVQEVIRVTPDFAVLLGLQQSLTPSRNNGFLNMLRLMQKKALMLYVEDEKGAELNSPGNSEVKDDSFVENSSGGHS SEIDNSETPSSSPSSSPSLPNSDGGELGGRGRRIKEKMEKELNPVELQVEDVSYQHAGHAGVRGSDGETHFNLKVVSAEF EGKSLVKRHRLIYSLLQEELQSGLHALSIVAKTPSEVS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46230:SF3
5 358 354 1.2E-150 –
PANTHER
PTHR46230
5 358 354 1.2E-150 –
MobiDBLite
mobidb-lite
51 71 21 - –
Gene3D
G3DSA:3.90.1010.10
74 216 143 6.5E-48 –
SUPERFAMILY
SSF82649
74 206 133 4.34E-41 –
Pfam
PF02657
84 203 120 3.7E-36
IPR003808
MobiDBLite
mobidb-lite
216 270 55 - –
MobiDBLite
mobidb-lite
223 262 40 - –
Gene3D
G3DSA:3.30.300.90
268 357 90 1.5E-35 –
SUPERFAMILY
SSF82657
272 357 86 7.59E-26
IPR036065
Pfam
PF01722
279 356 78 7.5E-30
IPR002634

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0389100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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