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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0394800 |
| Transcript ID | LotjaGi3g1v0394800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reduced male fertility, Probable F-box protein; TAIR: AT3G61730.1 reduced male fertility; Swiss-Prot: sp|Q9M365|FB331_ARATH Probable F-box protein At3g61730; TrEMBL-Plants: tr|A0A151SIJ9|A0A151SIJ9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0394800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79455788..79459319) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAAGCGCCACCTATCTGCCGCTACTTCCTCCGCCGCCGGAGAGATGCCACCGCCGGAGAAGCGAATCCGGAGAAC CAAAACCATCTGCTCCTGCAACTCTCCTCGTCCTCGATTTCTCTCCGCTCATTCGACTTTCTCCTGGTTCTCTCTCTCTC TCTAAACCTTACTGTGAAATCGATTTCAATTCCAAACACTTAGCTCGTATTATGATGTAAATGTTGCAATTAAACGTGAT CGCATGCTTAGTTTAGTATCAATGCGTTTCTGAGTTTCAGATCGAAATTCGGATTTCAATTTTGGATCTGATTTTTGAAA TTGTTGAATCGCGCTCAGTTTTGTTCTGTTAGTTTATCGTTGAATCTCTGATTATTTTTTTGTTTATAATTTCGATTTTC AAACGAATCAGTGGAATCGATGCTTGTTATTGTTCCGAGATTCTTACACAAACTTGCGTAGATCTATCTATACGTTTTGT TATTGTTCTGCAAGATGCATTTGAATCGCTTGGAAGTGAACTTCGAATTTGATTGTGGTTGACGATTTCGATTTTGAATT GCTTGTTCTGATCTGATTTTGACGGAAAACGAAACGAGAAAACTGCACTAGCTGTTGATTTTTTTATTTTAAGCATTCGA TTCGGTTCTGGTTCCATGAGTGCCTGAGAGTAGATTCTCTCTGTTTCGGCAGAGTTAGGCACTTCAATTTGAATTGCATG AGAGCTTAAACACTCTTTGAACTCTGTTCAATCTTTTGAAATATGTTTGATCTTTGTTTTCTATTTTTCTATAGCTAAAT GGATGCATCTTTGTGTTGAAAAAGTTCAAATTATCGTTTTCTATAGCTTTTATCTGTACGAATTTTGAGAAATTATTATT GCTAATTTTGTCTTGAACAATGTGGAATTCTGAATGCTGAACGAGAAGGTTCGATGAGGACATTTGGACAGAGATTGCTA AGTTTCTGGATGGGAAATCTCTGGTGATGCTGGCAGCCACGAACCGATGGTTCCGCCGTGCAATCATGGATGATGGAATT TGGAAGTTCGTTTGCCTGCGTGATCTTCAGGTCCCTCCACCGCAACGCGTGGCGTTCAAGTGGAGCAACCTGTACACCTC AGCCTTTGGTAAGAATTGAGATTGTAATAATACTACTATTGCTGTATATAATTTTTTTGATTCAAGAATTGAGACACTGT TCGATTAACTTCGATTTTGAAATGAAATTTCAGATGGGAGCCACTCCTACCTGTACCGTCAGCAAGAGAAACACATTGGT CAGTTGGCTCCCTCGCCTGGTGTAGTTTCTTTTCTAATTTTTCTAACTATATGTGGATGACATGATATGTATATAGGACT TGTGATAGTTACTCTATTTTATCAAACGGCATATTTATATTTTAAAATTCAATTTTATAAATTTAAAATATAGGGGATCC AAAATTTGAAATTCACATTAATATTTAGCAAGCCCCACACCCTCTTATCATATATTAATGTAGCCACATCCTTATATATG TGTAATTCACAAGTCACAACAAAATTTTAGTAGATTCCCTCTGAAACAGGGTTTACTATATCCTTTAGTTATAAAATAAA TTGCAAAAACACAATCGATTAATTTATTGTAGGATATTGCGTAGGTACCCTTTTAAAATGAGAGAGTTTAAAACTCTTCA TTTCATTATTTAGAGTATAAATGACTAAAAAAAATTACTAAATTACAAATTATAAAAGATTATAGAAGGGTAAAAAACAC CTTTATTTTTAGATGGATACCGGAGAAATTACATTTATTTTAGGTCCCTTTATTTTATTAGCTGATAAATTTGATTTTTT ATTTAAATTGCATAAAATTTATTGGTTTTTTTTATAAGCCAAATTTATTGTTTGTTTTTTGTAATTGTACACCCTGCTTT CATTTAGGAACTCCAGGAGTCCAGGGGATCCGAATTCCTTGAAACCATGTAGCAGGCAATATGTGCAACCTGCAACGTTA ACAACTAAAAATTTTTATTCTAACTGTCTTCTAAAATGTGCTATCAGATTGGATGCGTATTGGGGCTTTTTCTTTTGATT CTTCAGTTGCCCTCCTGACAGAGAGACTGGCATTTCCCGGGAAGGCAGAGGAAGGACAAACCATGGAGAAGATGTTGCGT TCTCAGGGTTATTGTGTGCTAGACAACGTTAAACCTGGAATTTGGATAGCTGGTAAACTTCCAAATTGACTTTTACCTAG GATCATCTTCGAAATGAATCAAGTCAGCTAATGATTTCACTTGTATCTAATTCATTTGTTTGATATGGTTGCTTTTTCAG ATCTGCAGCTTGTACGGTGTCCAGTTTGTGACCTCAATACGTGCGATGGTAATTTTGAATATAATCCCTCGAGCCCTGCA TATCCCTTAATACTGTGATTACCTTTTAATTCGGACAAGATAACTGAAATTGCAGTGAATAATGATGCTTCCCTGGTCAC TGTGTTTTACAGCAAGGGTTTGCCATTAGCATGAGTCTAGATTATACTTACTTAAATTGACCGGTTTCTCCTACTTATAC AGGAACAATGCAGACATTGGATGCAAGGCATATAGAACTATTCCTCTGCGAAGACTACCAGAATGGGAACTGGGAATACC AGCTTGTAGGATCTCATGATATCAAGAAACGAGCAGATGGGGCTGCTGGCGCCATTTTTGATATCAAACACCTGGAGGAT CCTTCCACTTCTGGTAAATCTTGATGCTTCGAGGCAACTTACAATTACAAGTAGTCATCATTTGTTTTAGAATAAACCAC CCATCTAATGTAAGTGCATAAAAGATCACATGTTTAGCAGAATAGAACCAGAATTATATGGGAATTGTGTTTATTGAATA TTTTCAGTAACAGATAGGCTATTTAACTCCATTGAAGAGTGAATTCGTAGATAATCCTATACAAACTTCAATAAGAATAC TAATGTTTGCGTCTAAGGAATAAGTATTTCAGTAACTTCATGTTCTAATCCCTTATTATTGCCTACCTTATTATAGAAGG CAATTTAGTCATGGCATTAACGCATAAATCAATCTTTCAATTTCCAAATCAAATGGCAGCTGTATTTGATTACAAGTCAT GGATTGGAAGATCAAATGACTGGCAACCGAAGGCCATGATTGCTTACCATGCGGTAGCTGTGAGCACTAATTTACAAGAA AATGAAGGTAAGAAGCTTTGTTGTTCCTGTATCAATTATTGAAGCAAATCTCAGAAAACTTGAATCCCGGATTTCTTATT TAGACTGAGCCTTGCAATTTCACTGGCTACTGTAGTTAAACTCATTTCAACATCCTTGCTTTGGGTATAATTGAATAATA AAAGTTCTTGGAGTTCTGTACTAGACATTATCTTTGGTACAAGTTCTTTGTTTTTCATGATTTTCCATTTTCTTTTTCAA TGCAAGCAGGTCTTCATGTGAAATACCATGCAATGAGGGCAGGAACTGATGGAGAGGTTGTTGCCATTAGAGTCTCTCAG CAGCTCCTGTGA
CDS sequence (LotjaGi3g1v0394800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGCAGCCACGAACCGATGGTTCCGCCGTGCAATCATGGATGATGGAATTTGGAAGTTCGTTTGCCTGCGTGATCT TCAGGTCCCTCCACCGCAACGCGTGGCGTTCAAGTGGAGCAACCTGTACACCTCAGCCTTTGATGGGAGCCACTCCTACC TGTACCGTCAGCAAGAGAAACACATTGATTGGATGCGTATTGGGGCTTTTTCTTTTGATTCTTCAGTTGCCCTCCTGACA GAGAGACTGGCATTTCCCGGGAAGGCAGAGGAAGGACAAACCATGGAGAAGATGTTGCGTTCTCAGGGTTATTGTGTGCT AGACAACGTTAAACCTGGAATTTGGATAGCTGATCTGCAGCTTGTACGGTGTCCAGTTTGTGACCTCAATACGTGCGATG GAACAATGCAGACATTGGATGCAAGGCATATAGAACTATTCCTCTGCGAAGACTACCAGAATGGGAACTGGGAATACCAG CTTGTAGGATCTCATGATATCAAGAAACGAGCAGATGGGGCTGCTGGCGCCATTTTTGATATCAAACACCTGGAGGATCC TTCCACTTCTGCTGTATTTGATTACAAGTCATGGATTGGAAGATCAAATGACTGGCAACCGAAGGCCATGATTGCTTACC ATGCGGTAGCTGTGAGCACTAATTTACAAGAAAATGAAGGTCTTCATGTGAAATACCATGCAATGAGGGCAGGAACTGAT GGAGAGGTTGTTGCCATTAGAGTCTCTCAGCAGCTCCTGTGA
Protein sequence (LotjaGi3g1v0394800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAATNRWFRRAIMDDGIWKFVCLRDLQVPPPQRVAFKWSNLYTSAFDGSHSYLYRQQEKHIDWMRIGAFSFDSSVALLT ERLAFPGKAEEGQTMEKMLRSQGYCVLDNVKPGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLCEDYQNGNWEYQ LVGSHDIKKRADGAAGAIFDIKHLEDPSTSAVFDYKSWIGRSNDWQPKAMIAYHAVAVSTNLQENEGLHVKYHAMRAGTD GEVVAIRVSQQLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 253 | 253 | 1.7E-136 | – | |
| SUPERFAMILY | 2 | 44 | 43 | 6.98E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0394800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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