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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0401000 |
| Transcript ID | LotjaGi3g1v0401000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyprotein; TAIR: AT1G49790.2 F-box associated ubiquitination effector family protein; Swiss-Prot: sp|Q91DM0|POLG_PVCV1 Genome polyprotein; TrEMBL-Plants: tr|K7MRK5|K7MRK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0401000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80323803..80330357) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTATCATAATCTACTGCTTTTATCATGTAACCCTAGTTGCTTTTGTAAACCATAGTTACTTTCTTAAAAGTAATCAT GGTCAGAATAACCTTAGTTACTTTAAAAAACCAGAGTTACTTTTACAAGTAATCATGGTTAGTTTAATGTGTATAAATAG GCCTCATAGAGCTGAAGAGAAGGCATCGGGTTTTTCCCTACCTTCTTCTCTCTCTCTCCCCCTCTCTATGTTTGTAATCC CTGCAGTTTATCCTTGAATAAAGCTTGTTTCTGTAAGTACTCTGAGTTTTCATTTTATATTTGCAAAATGTTTTTTACTT TCCGCAAGTTCATATATATATATATATATATATATAGAATTATAGAATCACGACAAAGTGAAATGGGTGTTAATTTTCTC ATCACCCTTTTAGATATTCATATATATCATCCGCTTTCACACTTACAATTTGCGAAATATATAAGTGCGATAAATTTATA TGGTGAGAAATGTGAGGGTGGTAGAAAAAAGCAATGCCCAGGCGAACTTGGTAGGGTTAAGATCAACTCCTTATGTAAAA CCTCAAGGGAAGGATCACCAGACCCCAGAGGGACAAAGCCCTCACCCACAAAGCAATTTGAATCAGACCCTAGACATAGT AAACGCAAGAGAAATGTCACTAACCTTAAATGAAAATGAAGAGGAGCGAATGCGCAACGCACCACAACAAACAAACAATA GTGCCCAAACAAGCCGCAACAAAGAATTTAGAAATCTTAGCAAATCTGAAGATACTGGAATAATAAAGCCAACATAATCA ATCATTTATATATAGTGAAACAATTCACTTTTAATAAAGGAATTTCTGTCAAATCTCGAACCCCCACGTATTTTGATCAA TTAAGGGAACCTGGCTTTCGTGATGACCATTAAGTTGAACCCGGCTCAAGAGATGGGCCACACTTCAAGCTCGTTAAATT CAACGCTAGCTTAAATCTTGGGGTTGTGTACCCTCCGAGTTTGGGGCCTAAATCCAATTCATGTGATTGGTCACACTTCA AATCCACTAAAATTTTGTCCAAATAAATCCACTAAAATTAACACTTAAAATTTCAGGGTTGTGTTACTTGTGTATCTCTG AGTTTGGTAGAACTCGTAATTAATTAAGTTGGATTTAATCTCTTTCCTTGTATCCACACAGTAATTCACTGACATTTTAG TCAAAGACTTTCCTCGTAGCATCGCAAGTAACTTTTTGATAATAAGCACCGCAAGTAATTTCTTCATGATGATTGATTTG CGGGTTATTTTCCACAAAAATGCAATCTGACAAATTAAAACTCAATGCTGGTGTCTCACATGGCCCGATTTTGTGCCAAT ATATTTGTCTATCCACTAAGAAATGTTGTGCTAATTAATCTATGGTGGGTAGCTAGAGACTAATGAATTCAAGATAGTGT CATGATGTAGCCCTGCTACCTCATAATTTTTTTCTAACCATTGGTGCCAACAACCCATTGTTTCTTTTTTTGTAATTTGA ATATTGTTTCAGGATAATGAGAATATTGACTCATTCCATAAAAATGACCTAGCTCGAATGTGAAATCCCAAAGCCTGACA TTTTGTACCCAGAATGTTTGTTTATTTATGAAAATTTTATACATATCCAAAACGGTAGGCCACTAGGCCGATCATTGGAT TAATGGATAGGGATGTGTATAGCCGTATAGGTAATTATAATTGTTTTGTAAAAAAAGTCATTATTTAAAAGAAAGTCAAC TAGTTGACCTGTGACAATATTTTAGTAGGGTATTCCCCTAAAAAATCTTAAGGCACTACGACATGTGCCGCCTCTAAACT TAAAACTACTTACTATTTCAATATTAAGAGATGTTAATTTTAATTTCAACTTTTCCCAACAAAGCACCCTCATACATCAC ATGCCACATAACCTTCGACCTATGACACGATGACAGGCCACAAATATCATGCCTGTGAATAACTTATAATTTTTTTTACG GGGAATCACTTATATTGGATACTTATATGTGGTATCTTAAAAATTGTTTTATGGGGTACTCGCATTAAGTAACTCGATCA ATAGTTTATTATTATGTTATTTAAGGTAATACATTTTTTAGATTTTACTTTACTTATTAATAAATTTTGTCTCATAAAAT TCATTTAGTGGTGGGAACTAATGATGGTGATGAAGATGCGTATAAAATGACCATGATTGATAGATGAATACAACGCTGAA AAAACAGCTCGCAAATCTCGCGTCCCTAAGAATGGAACGCTACATTTTTTTTGATAGGCGGAACGCTGCATTATTACGAT AACAAAATCAAAATTTCAATTATGAGTCTTTATTATTGAACAAACTCATTTTGAGTATCATACCTTAATCTGGCTTGAAG TACCACAAACAAGCGATATATATATATATATATATACCAAGAGGGGTTCGGAAGCAGATTTAAGGGGTTAGAATTAAAGC TGGTAAGAGAAGTAGGATGCGGCCAGACTGCAGAATATAAAGATAGACTGGAATAATAAATGCGCAGTAAGTAAATAAAT TAAAAGGAGGCTCAGTCTTCCATTGACAGAATAAAATAAAGCAGGAGGCTTAGCCGTCCATTAAACAAGATTGCAGAAGA TTGATATTATTGAAAACTGTCAGGGAGAGAGTTTGCTGAGCCTTTGATATATTCTATGTCAAAATTGAAAACACTTAAAA TAGCTTGCCATCTAGCAAAAATTTGTTTTGAAGCTAAATTTTTAACATCTTTTTGTAATATATCCTTGGCAGATTTACAA TCTACGCGGACTAGAAAAGCATCAGAGAACATATCCTCAAAGGTTTTAACTACCTGCACATAGGTAGTGTTCAAATTGGT ATGAAACCTCTTACTAGAGGTTCACTAGACGTCGCCGTTCTTCTATGTTTAAGAGATACTAGACATAACAATTTTCACGA CTCTCTCTTAGGAACTATTGAATCTAGCTTGAGTCATGGACCAATCTTCTTCAACTGTTATCCGGACTTAACAGTAAGTC TGGATGACAAGAACATTCTTGATGTTCTATTCCTTAACATCAAGCTTCATGGATATGATATGAAGGAAGGATCTATCCCA ATCACCTTAATCTACAGAGTTCAGTATAAGGTTATGAACTCAATCAAATCTCATTTCCTTAAAACAAGTTGTGAAAAGTC TGGAGAAACCACTTTGTTTCTCACTGATAATAAAAAAGCTAATATTATCGTCCCAAAAACTATTCAATGGAATGATATCA CTCTACCAGAGAAATGGTCAATAGAAAGAGCTACACCGGCTCAATCTATTGTCACCCCTGACTTCCGTGATGTTATCCAA CACCAAACTGGGCAGGTTGATTTAGTCTTTGATAGGAGAAACTCCTTTTCCCTCCCTAGATCGATCAGAACTAAAGAAGA CTTTAGATCTACTATGTCTAGAAGATCTTTTTCCATGTCTCGGACCAATTCCATCAGTAGAGCTCAACCTGAACCCTCCC ATGATGAATCTACAATCCACCTTACTGGTTTTGAGACTACAACACCGGTAAAAACAACATACCAAATGGATAATGATGAC CAGAGATCTACTTTATCCCCAACCTACTCCTCCATTGAAACCCCAAATTTCATTGGAGCAATCAACATAGAGTTCACTAT TGATAAAGAATCTCTTAGAAAAGATTTCTATTCCGAGGAATGGACTCCTCAAAGAGAATGGTTCTTCAAAAACTACCAAG GCCAAAATAGAAAAAATATCCAAGAGCCATTCTATAGGTTTCTTGAACTCGTCCAACAAAATATCCCTTTTTTCAACTGG TTCCATGCTTATACCATCAAAAAAGGGATTAATTACCCTTATCAAGTCGATGTCATAACCTGGCAACTAAGCGATGAAAA AACAATACAATCAGATGTACCTCCCAAGGCACCTTTTGTGGTTAAAAATGCCCAAAACCTTCGTGTCCTAGCATCCCCGT TTAAAACGAAAAGTGAGGAAGCAGTTACATGGAAGGATATCAAAGATATCATGGAACAAGCCAACTACACAAACAAATAC CTTCAACAATTAGGTGATGAGGCTTATTTCCAACTTTTGAACAGAGGAAAGGTTAAGATGGAAGCAAGAGGGGTTAGAGA AAGCAGGAAGAGATAAGACTTACAGTTTATCTCTCTAGGATCTGACTATCTCTCTGCGTCTAAAGTGTGCCCTCTAACAT AAGAGGGGCTCTCTATTTATAGGAAAAATAGAAACACTGTTTGAATAGTTCCGGTTATCGACTGGAACTGTTCGGTACTA ACTACAGTGAAAAGTCAACTTTGCTACAGTAAAAAAAGTCAACTTTGCTACAGTAAAAAGTACAATTTTTGAGATGAAAA TCAAAGGAGATCTTCTTCACTGTCTTCCAGGCTGTCTGGGACGAAACTGGCGTTAGATTATGATTGAGAGGGTATCCGAT GCTTTTCCTTTTTCTGCAAAGGGTCCTTTGAAGAAGATGCTTGATTGTCTTTTGAATTATTTTGTAGTATTTGAAGGGCA ACTTGGAGGCTTTTCAATAAACCTTCCTCTGAAGAGGCACCTGCGAGTGCTGCAGTGATGTGAGCCTTCTGGTTGAGCAG GAGGCAAGATTGAGGACTTGCATGATTCAGATATTTCTGATTTGTTCTGATCCAAAGATCAATATTTTCTTTTGAAACCA TTGAAGCATCAAAGATTTTCCACCATTTGATTGAGGTTTGCTTGTGGAGCTCAGGAATATTTTTTGTTTTAATGAAGTAC TGCCATGCAAAAATCCAAGACAGCGAAAAGATTGTATAAAAATTTAAACTAACCGGATAGTTGTTTAAATCTTTATTCCA ATTTTTTGAAAAAAGTTTGAATCCCTCCAGTACTTCGGGGGGAAAAATATCTTTTGTAGGTCCAAAGAAATCCCACCAAG AGTGGAACCAATTTGGAAAAGAGTAGTTGGTGGCTTTCTTGAAATAGATAAGCCAGGAATGTTTGAGATTCTTATTTTGG AAGCCGAGGATGGTATTTTCCCAGGCTCTGACATGGTCCCAATAATTAAAACCTATTGGATCAAAGTTATTGGAGAATTT CTTGGTTTTGTTGGGATTGCTACCAAAGTCTGAAGGTTTAAGAACTCTCATGATTTGGAAAGTTGAATGGGTTATTAGGG ATTCATCATTTTTGTCCCTAAAGTGTTTGATTGCCACATTATCTGTATCTACAAGAATAAACTCATAGAAGTTTTGGGTT TTGTTGTGGCTGATTGGTTCAAGGTGGCTTGATGTCGGAAAAACTTTTGAAGCTGTTTTATCGGCTACGAGCTCACCACT AGTTTGGTCCTAATACTCTGGTTCGATCAACATGACAAATTTGGAAATTGGTTTATTGAGATATTCTTGTCTGGGAAGGG TTGATTGGATTGGTTTGGGATTGGCTTGAATGACTTGGGATTTCTGGGTTTGGATTATTGTTTGGAGTGATGGTAGGTCT TGGTAACTATCATCATCTGCAATGCTAGCCCAAGTCTTTTTTGGAAGTGTGGTTAGACCTTGTTCTTGGAAGGCCTGAAG GGTTTGGAATGGGCATGCATAGTCTTCCTTAGTTTGTTTGGATTGGACAAAGCTTTGGGTGGATAACCTAGATTGGTTTA GGGTGGATGACCCATTTTGATGTAAAGAAACATTCTTACCTCTGGATTTGCTGCTTCCCCTTCCTCTGGAAGAAGAGGTT CTGGAGGCCATTTTAGCCCCTTCCCTGTAAATATTCATATATATATATATATATATATATATATATATATATATGAGAGG AGAGCCCTTGATGCACGAGGTACACACAGGTCACTGCCAGTTAGTGAGGTTTTAAACCATCGTAAATTGTACAATATATT TGATGCTAAATGATTTAAACCAAATTGATTCTACAACTGTTGTTGGGTGGGTCACGATCAAGACTAACCGTCTGTGGAAG CTGTTAAATGATTTAAACCAAATTGACTTCCTGATGTTGGAAGTTCATTGCTTGGGTGTGCTTCATATTTACAGGAAAGC TAATTCCTCTGCTGACAATTTAGCAAAAGCAGGTTACAATCGATCAAATACTCTCTAGTGGCGTTCTGAGGGGGTTTGAG GAGCCAACCCTTTCTAGCTGCTATTTGCTTCTTGGCTGCTTGGCGCGCGTGCTGTTCTTTTTCCTTTTTACTTGGCTGCT GTTATGTTCAATGCCTTGTTCTCTCTTTTCTTAGCTACTTCTCTTTAATTTCCTGTTGTTGTTTTTCTTTGGCTTTGGAT GCCTTGTTCCTTTTATGTACTCTGTTTATGCGGGCTCTTATCCCAGCTTTCATTATTATATATATATCATCCTTTTGTTT CTAAAAAAAAATTATTTGATGTTTCTTTTAGTGGCAGCTTTTAATCGCCACTAATTGCAAACTGTATTTTTTTGAAGTTT GGCTGCTATTTGCACTCTGAAACTACCAGAATTATCACCACAATATATTTTTCTATCTGCTTAATGCTATGTAAA
CDS sequence (LotjaGi3g1v0401000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCTCTTACTAGAGGTTCACTAGACGTCGCCGTTCTTCTATGTTTAAGAGATACTAGACATAACAATTTTCACGA CTCTCTCTTAGGAACTATTGAATCTAGCTTGAGTCATGGACCAATCTTCTTCAACTGTTATCCGGACTTAACAGTAAGTC TGGATGACAAGAACATTCTTGATGTTCTATTCCTTAACATCAAGCTTCATGGATATGATATGAAGGAAGGATCTATCCCA ATCACCTTAATCTACAGAGTTCAGTATAAGGTTATGAACTCAATCAAATCTCATTTCCTTAAAACAAGTTGTGAAAAGTC TGGAGAAACCACTTTGTTTCTCACTGATAATAAAAAAGCTAATATTATCGTCCCAAAAACTATTCAATGGAATGATATCA CTCTACCAGAGAAATGGTCAATAGAAAGAGCTACACCGGCTCAATCTATTGTCACCCCTGACTTCCGTGATGTTATCCAA CACCAAACTGGGCAGGTTGATTTAGTCTTTGATAGGAGAAACTCCTTTTCCCTCCCTAGATCGATCAGAACTAAAGAAGA CTTTAGATCTACTATGTCTAGAAGATCTTTTTCCATGTCTCGGACCAATTCCATCAGTAGAGCTCAACCTGAACCCTCCC ATGATGAATCTACAATCCACCTTACTGGTTTTGAGACTACAACACCGGTAAAAACAACATACCAAATGGATAATGATGAC CAGAGATCTACTTTATCCCCAACCTACTCCTCCATTGAAACCCCAAATTTCATTGGAGCAATCAACATAGAGTTCACTAT TGATAAAGAATCTCTTAGAAAAGATTTCTATTCCGAGGAATGGACTCCTCAAAGAGAATGGTTCTTCAAAAACTACCAAG GCCAAAATAGAAAAAATATCCAAGAGCCATTCTATAGGTTTCTTGAACTCGTCCAACAAAATATCCCTTTTTTCAACTGG TTCCATGCTTATACCATCAAAAAAGGGATTAATTACCCTTATCAAGTCGATGTCATAACCTGGCAACTAAGCGATGAAAA AACAATACAATCAGATGTACCTCCCAAGGCACCTTTTGTGGTTAAAAATGCCCAAAACCTTCGTGTCCTAGCATCCCCGT TTAAAACGAAAAGTGAGGAAGCAGTTACATGGAAGGATATCAAAGATATCATGGAACAAGCCAACTACACAAACAAATAC CTTCAACAATTAGGTGATGAGGCTTATTTCCAACTTTTGAACAGAGGAAAGGTTAAGATGGAAGCAAGAGGGGTTAGAGA AAGCAGGAAGAGATAA
Protein sequence (LotjaGi3g1v0401000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPLTRGSLDVAVLLCLRDTRHNNFHDSLLGTIESSLSHGPIFFNCYPDLTVSLDDKNILDVLFLNIKLHGYDMKEGSIP ITLIYRVQYKVMNSIKSHFLKTSCEKSGETTLFLTDNKKANIIVPKTIQWNDITLPEKWSIERATPAQSIVTPDFRDVIQ HQTGQVDLVFDRRNSFSLPRSIRTKEDFRSTMSRRSFSMSRTNSISRAQPEPSHDESTIHLTGFETTTPVKTTYQMDNDD QRSTLSPTYSSIETPNFIGAINIEFTIDKESLRKDFYSEEWTPQREWFFKNYQGQNRKNIQEPFYRFLELVQQNIPFFNW FHAYTIKKGINYPYQVDVITWQLSDEKTIQSDVPPKAPFVVKNAQNLRVLASPFKTKSEEAVTWKDIKDIMEQANYTNKY LQQLGDEAYFQLLNRGKVKMEARGVRESRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 348 | 347 | 7.1E-36 | – | |
| PANTHER | 2 | 348 | 347 | 7.1E-36 | – | |
| Pfam | 8 | 101 | 94 | 8.7E-14 | ||
| MobiDBLite | 199 | 222 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0401000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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