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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0406900 |
| Transcript ID | LotjaGi3g1v0406900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | muscle M-line assembly protein; TAIR: AT1G53800.1 muscle M-line assembly protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|A0A151TYD1|A0A151TYD1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0406900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81013370..81018120) extracted from Lotus japonicus Gifu genome v1.2.
CTTGAATACATATTTAGATTGAACACAGGTCCATGAGGCCCATTTGGAGGGTGATAGAAGGTGAATGAGCTTCTTGAGTG GTGAATGGTGAGTGGTGACACCATTCAATTCCTGTGGTAGCTTTCACTTCCTTCTTGGGGTGGCTGATTCCTCAGTCACT CTTCTCCCAACCAACACTTTCAAAAACAAGAGACAAGAGGAATGTTACATGACACAACTGATATAGTTATCCACTCACTG TTTGAATGAGCTTCCATGCCTTTGGTTGGTATTCTCACTTTTCTCACTCTTTTCTCATATGGGGTCCCTTTTTATGCTTA AAAATGCAATCTTTGATATCAATTTTGCATCACTTGTTACAAATTAAATGACCTAATTATTCTTGTTTTGGGTATGCAGG GATTGCAAATGCACATCCCTCCTTCCAATATGCTCTGTGTTCACCCAGGTTGCAAATACTATCATCAGTTTCTTGTGATT GGAAACTCTTGGACAAGTTTAATAATGGCAACTTTGATGTGGGGGGTGTGGAGATGAGAAGGTGTGGAAGATTTCTAGTA AAGGCTTGTGCTACTACTACCCTTGAACCTAAGAGGGTAGCTGGAGAGGAAGGTGAAGTATTGGGTTCCAAGATGTTGCT TGAATCTTGTTATGAAGATTCTGAAGGACTTGATGAAAGGGAGAAGTTGAGAAGGATGAGGATTTCAAAAGCCAATAAAG GAAATACACCATGGAACAAGGGGAGAAAGCTGTCAAAGCACAGTGCTGGTAATTGAATCCTTATTGCCTTTGCATCAGTG TCCACTCTATTTTTTTTTGTATTGTGGTCTTCTAACATTGGTTGTGTGTTAAATGTGAGCAGAAACTTTGCGGAAAATCA AGGAAAGAACAAGACTTGCAATGCAGAGTCCTAAGGTGATGTCATGTAAGAATATTTTTATGCTTGATGAAGAAAATTTG ATTCTTAGTTTACAAAATCCTTTTTATACTTACAGATTTTCAATTATTCAGGCACTGATTGGACATTTTAATGCGCAAAA GAAATTATTTTTGATAGGAAATTCTGCTTGATCTTGTGTATATACTATTTGTCTTGGGTGTCACTGATCAGTTTCTTAGT TAAGTCTATTGGGGATTACTTGGTGACAGAGATCTCTATAGTTAATTAGGTATCGATAAGATAATCATAGAATGGTGATC AGGTTTTTCAGTTTTGCCTTAGATATTTTCTTAACTAATTTTGGTTGATAAAATTTTGTAATGCAGGTCAAAATGAAGTT GGTTAATCCTAGGAATGCACATTCGTAAGTAAATGCTTTTCCATGATTATTGTTTTTTGTTACTTACTACTAATAAATTG TCCTTTTTGGATGGTCACTTCTATTATTTATAGAATTTTACTGGGCTCAGCCTTCTTCATTGATTGCACAGTGCAGAAAG AAAGCAGAAGATAGCTGCTGGAGTGAAAATGAGATGGCAAAGGAGGCGAGAAAAGATGGCGGTTCAGGAAACTTGCTGCC TTGAGTGGCAGAATTTAATTGCACAAGCTTCTAGAGAAGGCTATGTTGATCAGAAAGAGCTGCAATGGAATTCCTATGAA ACCTTGTATGAAGAGTTGAAGCTGGAGTTGCTGGTGAGTGTCAAACAAAGGAAACAAATGCCAAGGGCACCAGGTAGCAA AACAACACCCTGGACTTCTGGACAAAGAAGAAAAGTTGCAGAGGCAATCTCTGTAGATCTTGTAAGTGTGTGTGTTTGTG TATATAGTATATACATATATGTAAGTTTCATGGCTTATGGTTTCTACATTATAGCAGCCAAAAGCATACTAGTTCTTCCT CTTGGCTAGCACACTAATAGAGTCTAATAACTGCATAGAAATTATTTTTGTTTGTGATTGACTTGAAAGCTTCTCAGACT GTGGTATTGATTATGTTTTAATGTAACACACTTATTAGTTTCTTTTTCTTTTTTCAAAAAAGATACTGAATGCTTCCCCT CTGGTGCATCAGGTATAAGTTAGGATGATCCGATCTTTCTAGTATTTAAAATCTTAGGCATGTACTGATATCATTACCTG TTTTTTCTTATTAAGCTCCGTAAGATAATGAATATTGTGAAAACAAATTTCTTGTAATTGGTTTCTATAATGTTCTGGAG CAATCTGAATATGGGGCTGAGTGGTAAAACTAGTAGATAGTAATATATGTTTTTTTAATACTTCTCTAGAAATTGGCTTT GGTTTTAGGTGTAAAACCCTTATAAGCCAACCTTTTTACTAATTGTTTTCCAATAAATGCTGAATCTGTTATGAAGTTCA GTCAAGGGTTTATGTCAAAGGTCAGGAACCATATGTTGTCACCTAATGACACTCATTTGTATTTGCAATTGTTTACCTAT GCCAAAAATGTAGAACATGTTGGTAGGTATCTGTTATCTTCAGCCTTATCTTCGCAATATGATATGTCAGCTTCTGTGTG GTACCAAATGATATAAAATAGACATGCAGGGTTTTCCAAACACTTGTATCAAGAATAATCAAATTTGAGAATAACAAACA TTATTTCTTTCTTGTTCCCATCGCTACTTTCCTCCTGGTTGACAAGATATATTTTAGTTATATCCTGTAAAGTTGGCAGT TCAAACTGAATTCAATGCTTATTCAGCTTTAAATTTGTACTATCTGGTTAAAATATATCAGCTGGATTTCTGAGTATTTT TCTGCCAATCAGGAATACCGCAGAAAAGGTTACACTACAAAGGCCAAGTATCATGACATTGAAGGAGCTGAAATGAAGCC AAGAAGAAGGCCAAGTGATGATGGACAGTCCACAAGGAGTAACACTGTAATGGAAAAGGATCCTGCTAATGACATTAGTG TTGAAAGTGGAACCAGAATTCTTAACCTGATCTCCTCAGGCAATGCTGAATTCCCAGCCTTTAAGGATCATTTGGAGAGT CCTAAGCTGGATATGATGAAGAGCGTTAAAGCCCAGAGAGGTGTTGCAGAAACCAAACTGAACAAAGCCATTGAGCGAGC TCGGTAAACTTTTTATCATATATCAGTCATTTATTATTTTTCTTCTCAACGAAATTAAAATCAATTATTTTGTGTATTTT TCTATAGCTTGTGTGGGTGTTTTCCCTTCTCTTTTAGGACCATTATAGTTTAGCTCATTGATGAAACAGTTTAACATATC TAGTTAATCAGTAGCCTCCTTCATGAACTTGAAGTGAGGTTGATTCTCAGAGCGCCTATTAACACATATGTCGAGCAGGA AGTAGAGCACATACCCAGAAGGATATTAACGAAAGCAAATTTAGATGCTGAAGGAAAAAAATGGCGATAAATGAGTTCTA GGATTATTGATATGGATTACAGAGTTAAAGTGCTTATAGTATATTAAGGTGGTTGGTCCGTAATATAATTAGAATCTTTC TATCGCTGCAACTTCCCTTTTAAGATATGATATGTATGTTTTTTATTATTGATCAATTTGCTAGCCTTAGAATCTATGCA GAAGTGAAGATGGGTGTTATAGTGGATGAAAGTTGACAAAAACAATTTTAAGGGTTAGATGTAAAAAGTTGTTCAGAAGT ATGGGTAACCTTTATTCAGAATGATAAACTGTTCAAACCTCAAACTAAAGGTGACGTAACATTGATTTTCATAGAGGATC AGATGATTAAATTTGAATGTCAACTTGAACTATATGGGCATGGAGCTTCAAAACTAATGACCGAGTCTTATCAATGTTTT GAAGTACAAGAAAACCCTTTTTTCATTAAGCTGACAGTATTTTCATTTCTATGATCATTGTGAATTCACTAAACAAGTAA ACAGTGGTTACACATGTGTTGCTTTTGAGATTAGATCAAAATTACATGGTGTGCTTTCTATGATTCCTATTTTAGCAGTT ACTTTTTATTATGCATTCATAAAATATGATGTAACTGTGCAGACTATTGATTGCTGAAGCTGAAAAGGCTGCCAAAGCAC TTGAGGCTACTGAAATGAAGAGTCCCTTTGCTCAAGCTTCCCTCATGGAATCTAGAAAGCTTATAGCTGAAGCAATTCAA TCACTTCAATCCATTGATACAAAAGGGATAACTGCGAGTAATGTCCCTTCTGTTGCTTTGGCCATGGCCAATGAGGAAAA CGATACAGAATTTGAAGTTCTAAGCCAATCACATATGCTCCCAATAAACGGTAAGAAAATGTTATCATCAAGTGACTACA ACAAGTTTTCAGAAGATCTTGACAAATGTGCGTCAGATCAACAAATGGAAACAGAACAGGATCAGAGTAGTGAATACAAA ACAGACCCTTCTCCAACTGTGCTAGGAGTTCAGTCCATTAAAAATGAAACACAGCTTAAATTACCTGCTGTTGTAAGTAA AAAGTGGGTTCGTGGAAGGCTTGTTGAATTGAAACAGAACTGATAGGGGGAGCTTAGCTCACTGTAGACCATTGTCAATG CTATACCATATTCAATTATTTAACAACATGATGGTTGCTGTAATTCTGATTATCGTTTAGCATATATTCACATTCAATTT TAAAAGCACAATTAGTGTAACAATGTGATTAATTTTGACAATTATAAACAATACAAACGATGAGATGATAATTTTTTATT TGAATTTGGTGTATTCGACTGCACTGCAGTCACAAATCCAAACCATTCAATTTTGGTCCAACGGCTTATATCTAGTATTT GTTTACATTTAAATTTGGCACTCAAATAATG
CDS sequence (LotjaGi3g1v0406900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTCCATGCCTTTGGGATTGCAAATGCACATCCCTCCTTCCAATATGCTCTGTGTTCACCCAGGTTGCAAATACT ATCATCAGTTTCTTGTGATTGGAAACTCTTGGACAAGTTTAATAATGGCAACTTTGATGTGGGGGGTGTGGAGATGAGAA GGTGTGGAAGATTTCTAGTAAAGGCTTGTGCTACTACTACCCTTGAACCTAAGAGGGTAGCTGGAGAGGAAGGTGAAGTA TTGGGTTCCAAGATGTTGCTTGAATCTTGTTATGAAGATTCTGAAGGACTTGATGAAAGGGAGAAGTTGAGAAGGATGAG GATTTCAAAAGCCAATAAAGGAAATACACCATGGAACAAGGGGAGAAAGCTGTCAAAGCACAGTGCTGAAACTTTGCGGA AAATCAAGGAAAGAACAAGACTTGCAATGCAGAGTCCTAAGGTCAAAATGAAGTTGGTTAATCCTAGGAATGCACATTCT GCAGAAAGAAAGCAGAAGATAGCTGCTGGAGTGAAAATGAGATGGCAAAGGAGGCGAGAAAAGATGGCGGTTCAGGAAAC TTGCTGCCTTGAGTGGCAGAATTTAATTGCACAAGCTTCTAGAGAAGGCTATGTTGATCAGAAAGAGCTGCAATGGAATT CCTATGAAACCTTGTATGAAGAGTTGAAGCTGGAGTTGCTGGTGAGTGTCAAACAAAGGAAACAAATGCCAAGGGCACCA GGTAGCAAAACAACACCCTGGACTTCTGGACAAAGAAGAAAAGTTGCAGAGGCAATCTCTGTAGATCTTGAATACCGCAG AAAAGGTTACACTACAAAGGCCAAGTATCATGACATTGAAGGAGCTGAAATGAAGCCAAGAAGAAGGCCAAGTGATGATG GACAGTCCACAAGGAGTAACACTGTAATGGAAAAGGATCCTGCTAATGACATTAGTGTTGAAAGTGGAACCAGAATTCTT AACCTGATCTCCTCAGGCAATGCTGAATTCCCAGCCTTTAAGGATCATTTGGAGAGTCCTAAGCTGGATATGATGAAGAG CGTTAAAGCCCAGAGAGGTGTTGCAGAAACCAAACTGAACAAAGCCATTGAGCGAGCTCGACTATTGATTGCTGAAGCTG AAAAGGCTGCCAAAGCACTTGAGGCTACTGAAATGAAGAGTCCCTTTGCTCAAGCTTCCCTCATGGAATCTAGAAAGCTT ATAGCTGAAGCAATTCAATCACTTCAATCCATTGATACAAAAGGGATAACTGCGAGTAATGTCCCTTCTGTTGCTTTGGC CATGGCCAATGAGGAAAACGATACAGAATTTGAAGTTCTAAGCCAATCACATATGCTCCCAATAAACGGTAAGAAAATGT TATCATCAAGTGACTACAACAAGTTTTCAGAAGATCTTGACAAATGTGCGTCAGATCAACAAATGGAAACAGAACAGGAT CAGAGTAGTGAATACAAAACAGACCCTTCTCCAACTGTGCTAGGAGTTCAGTCCATTAAAAATGAAACACAGCTTAAATT ACCTGCTGTTGTAAGTAAAAAGTGGGTTCGTGGAAGGCTTGTTGAATTGAAACAGAACTGA
Protein sequence (LotjaGi3g1v0406900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFHAFGIANAHPSFQYALCSPRLQILSSVSCDWKLLDKFNNGNFDVGGVEMRRCGRFLVKACATTTLEPKRVAGEEGEV LGSKMLLESCYEDSEGLDEREKLRRMRISKANKGNTPWNKGRKLSKHSAETLRKIKERTRLAMQSPKVKMKLVNPRNAHS AERKQKIAAGVKMRWQRRREKMAVQETCCLEWQNLIAQASREGYVDQKELQWNSYETLYEELKLELLVSVKQRKQMPRAP GSKTTPWTSGQRRKVAEAISVDLEYRRKGYTTKAKYHDIEGAEMKPRRRPSDDGQSTRSNTVMEKDPANDISVESGTRIL NLISSGNAEFPAFKDHLESPKLDMMKSVKAQRGVAETKLNKAIERARLLIAEAEKAAKALEATEMKSPFAQASLMESRKL IAEAIQSLQSIDTKGITASNVPSVALAMANEENDTEFEVLSQSHMLPINGKKMLSSSDYNKFSEDLDKCASDQQMETEQD QSSEYKTDPSPTVLGVQSIKNETQLKLPAVVSKKWVRGRLVELKQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 89 | 522 | 434 | 3.3E-103 | – | |
| PANTHER | 89 | 522 | 434 | 3.3E-103 | – | |
| MobiDBLite | 276 | 294 | 19 | - | – | |
| MobiDBLite | 276 | 310 | 35 | - | – | |
| Coils | 356 | 383 | 28 | - | – | |
| MobiDBLite | 469 | 498 | 30 | - | – | |
| MobiDBLite | 469 | 483 | 15 | - | – | |
| MobiDBLite | 484 | 498 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0406900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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