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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0409300 |
| Transcript ID | LotjaGi3g1v0409300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L51, mitochondrial; TAIR: AT3G59650.1 mitochondrial ribosomal protein L51/S25/CI-B8 family protein; Swiss-Prot: sp|Q9UUC8|RM51_SCHPO 54S ribosomal protein L51, mitochondrial; TrEMBL-Plants: tr|I3T9B3|I3T9B3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0409300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81303802..81305826) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTTGCGAGGGGTTTGGCAACTTCGCAAGCTCATTGTTAGCTATAGCGACTGGGGCGGTAGCAGCAAAGGCATAAG GTACAGATTCAATATCCCATTACATGCTTCAATTCACCATTTCTTGTGTCATGTTCATTATAAATCAATTTATGTTTTTT TGGAGCATAAAGGTCGAATTTTTATTTTTAATTTCATCTGGGTCTTTGGGTTTGTGAAATTTTTCGCATTGCTCGCTTCC TATGGTTCTCTTTTTATCTGATTGTAGCATTGCAATTCATTTTATGGGGGGCTATTGCAATTCATTTATGCAAGTCTATG AATAAAATATACAAAAAATAGACAAATAGGACAAATTCAATAGGGGCAGTAAAACTATTCCATGATCCTAGAAATGATGC GCCGGAAGAAAACACTGACCAAGAATTGATAATTTCAGTTCAATGGTCTTGGTCTACTCTCTAATAGTTGGAAGCACCTA ATTAATCATTACTTTCCTCCCATGTTATTGTAAACTTGGTTGACAGTTTAGCAAAAACTGTAATGGCAGAAATGTAACAA GGGGATAGAAACTAGAAAGAGAGAAGTACTTGAGGTTTGAGCTTAACAAATAGATGCCCACGGTCAGAGGATGATGTGCG GTGGAACGACGGTGAGGAGAGAGGAAAATTGACGGTGAGAGCTTTAGAGGTATACCGTACATGTTGTTAGGTTTCGAAAG AAATTGAGTGAAATAAACCTAGGTTAGTATCCGGTTTTTTCAATTGGAAATTGGCAATAGTGTCTAAAATTTCAATTGAT TAATAAAAAACACAAAACCACGCAAGTTTGTCTTGGAAGTACTTGTGCTTCATAGCATGGAATAGAGTGGTGTGGATCAA TAATCTGGTCATCATGATGCTTATAGTATGATTGGCGCTGCAGTGCAATGCTATAGAATTGCTTCTAGTTGGAATTTGTA CAGATCGTAGGACCAAAACCCACATTTATGATGGCATAAGAATATATTGAGTGGATAACTGACATTCCTTCTGGGACTTA GGCACTTAGCCATTGAGCTTTGTTACAGCTTTACATTGTCACAATATATTTTAATAATAGCAAGGTTTTAATTAGAGTGG TGTTCTTTGGAATAGATACTGTTTTGCCAGTATTCAGTTTTGTTTCTCTTTTAACTGCAGGCTTAATTTTTCTTCTTTCA TATTGCTTAGAAGTAATATTGTAATCTTTGCATTTGTTTCCTTCACTCTGTTCTTGTTTCTTTGTCTTCAACTATAGATG TTAGCATAACCTAATATCTGAAATTTATATTGAGCATCAGCCTTATATCTCTTCAGACTGGGAAAGTTTCATGAGCCACT AGTTACTATTTTTTTTCTTGCTTTTACTGACATTTGATTGTTTTTTGTTTCTCTTTTGCCTTATTGGCCGTGACTTCATG TCATGCCAATCACAACCTTTTAGCAATTAAGTCGAAGAAGTTCTAAATCCACTTTTGCGTTTTCTTAATATCTTTTTCAA TCTCAACTTTTTTTTTTCTTTCTCTTTTGCCTTATTGGCTGTGACTAGAATGAAGGCTTGGAATGAGAGGGCTATGAATA AGTATCTTTTTCATGTTTTGTTGTCCTGCTTGAAACAGGGAATTCTTATTTTTGGTTTGAATATCTGATAGGGCATTTAT GGAGTCGCATTTGCCAGAATTCAAGGAGAAGAATCCTCAATTAGAGGTGGTCACTGAAATGATTCGTGGTCAGCATCCAC ATCTGAAGGGTTTTTATGGTAAGATTCTTGTGCTCACTTACAACTTTATGACTCCTCAGTTGTGCAATTGGTAATTCAAC TATGAAATGCAGAGAACAAAAACCAACGAGTAGTATGTGTTAAGAATTTGGATCCGGAGGACATCCTTCTGCAAGCAACC AGGCTAAGGAATGCATTGGGAAGGAAGGTAATCAAACTGAGGACAAGACACGTAACCAAACACCCTAGTGTGCAAGGTAC ATGGACAACTGCCGTGAAATATTAA
CDS sequence (LotjaGi3g1v0409300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTGCGAGGGGTTTGGCAACTTCGCAAGCTCATTGTTAGCTATAGCGACTGGGGCGGTAGCAGCAAAGGCATAAG GGCATTTATGGAGTCGCATTTGCCAGAATTCAAGGAGAAGAATCCTCAATTAGAGGTGGTCACTGAAATGATTCGTGGTC AGCATCCACATCTGAAGGGTTTTTATGAGAACAAAAACCAACGAGTAGTATGTGTTAAGAATTTGGATCCGGAGGACATC CTTCTGCAAGCAACCAGGCTAAGGAATGCATTGGGAAGGAAGGTAATCAAACTGAGGACAAGACACGTAACCAAACACCC TAGTGTGCAAGGTACATGGACAACTGCCGTGAAATATTAA
Protein sequence (LotjaGi3g1v0409300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRGVWQLRKLIVSYSDWGGSSKGIRAFMESHLPEFKEKNPQLEVVTEMIRGQHPHLKGFYENKNQRVVCVKNLDPEDI LLQATRLRNALGRKVIKLRTRHVTKHPSVQGTWTTAVKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 116 | 116 | 6.8E-56 | ||
| Gene3D | 2 | 119 | 118 | 8.3E-36 | ||
| SUPERFAMILY | 8 | 90 | 83 | 6.93E-23 | ||
| SMART | 18 | 91 | 74 | 8.9E-20 | ||
| Pfam | 26 | 76 | 51 | 3.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Biological process | Mitochondrial translation | The chemical reactions and pathways resulting in the formation of a protein in a mitochondrion. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein; the mitochondrion has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code. |
Expression pattern of LotjaGi3g1v0409300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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