Transcript — View — Lotus Base

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LotjaGi3g1v0410800.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0410800
Transcript ID	LotjaGi3g1v0410800.1
Related isoforms 1	LotjaGi3g1v0410800.2
Lotus japonicus genome version	Gifu v1.2
Description	Auxin repressed/dormancy associated protein; TAIR: AT1G54070.1 Dormancy/auxin associated family protein; Swiss-Prot: sp\|F4HV65\|DRMH4_ARATH Dormancy-associated protein homolog 4; TrEMBL-Plants: tr\|I1MK43\|I1MK43_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0410800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:81452780..81456440) extracted from Lotus japonicus Gifu genome v1.2.

ATTGAATGATGGTGTAAAACATATTTATACCGTCGGTGCATAGAAATTAATCACTACGTATTTGTCATGTATATAGCATT CCTTTTCATGATATGTATAAAAAAAACTTTATCTATATAATTTGATAAGAGTAAACTTTCATTCAAATCGCCAACTTGGC ATAATTTTTCATGTCAATGCCATGATGCATACACTTCCTCATATTATTTTTTCATCACTATTTCTCTAAGGAAAAGTTCA GGAAATATCTATGTTTAAGGATATAAAATTCATGTAGTAAACGTCAAGTTAGCTTTTCAATTATTCAAGAAAAAATGAAG ATTTCTGGGAACTTATCCAATTGACCTGGCCCACGTGAACTTATAAAGTCTTGCTTGAAAATGAAATGCCCCCAACTATG TAATTTCTATCCTATTGCACTTCATGACTCAGTCTTCTTTAACCTCTTTCCTATATTTTTGGATCTCAGATTTGATTTCA TTACTAAAATTGTATTATTTTCAATGTGACTGTACAATTCAATTATCTCAAATTATAGGAATCTAATTTCAGCTATTAAA ATTGCAAGAAAATTATTTAAATTTAGCATGAACCAATATAGTACAAGAAAATTTAGCAAGGAAAATCAATTTAACGGCTA AGAACAAATTAAGCCACATTAATAGGAGCAAAGTCAATAAATAAATTTAACCTTATCCATATCCATCTTCATTATAAGTA CCCTCACACTCTCACCAAACAAACAGATAATAAATATTAAAAAAAAAACATAAAATAAAAAAAAATAAAAATTGTTTCTG CGTTGCTCTGTTCTTCTTCTTCTCTGTCGTTTCGTTCCTTCCATCTTTGGATTTTTGCAGACAACTACTACGTGATGGGT TTTCTTCACAAGCTCTGGGACGAAACGCTGGCGGGACCCGCACCTGAAACGGGTCTGGGCAAGCTCCGCAAGTATAATTC TCTTTCCGCCGTCGGAGTTCGGTCTACGGCGGCGGAGGATGTCCCCATCAGCCGCAGCATCACCATTGTTCGCACCCAAT CTGGTTTTAGAACTACCTCCTCCGCCGCCTCGGAACCTGCCTCTCCTTCTCCCCCTTTCACCCCTCGCACCCCACGTACC CGTAAGTGAAACCTCTCACTCTGTTTCTCTCTGTTGTTGCCTGTGTTCCCAGAATGTTTGTGTTTCTGGGTTTGCATGAT AGGGGAAATAGATTCATTTTTTTATCAACATATTACATATATAATGTTTGTTTTTAATTACAAAACCCCAACTCTATTTA TCTATTTTTCATGTCTTCAAGTATACATATTAATTCATAGTTCTTAGAATTTGTTGCATTTTAAGATAGTTGCTGTTGGA ATCAAGTGTTAGAGTCAAGTCCCACATTGGAGAAGTCAAGGTAAGAGTGGGAGTTTATAAGGAGATGGACCCATAAACCT AATGCCTTAAGGTTTTGGGTTAAAATGTGGTGTCCAAGATCTCCTTGGTGTTTCTCCTTGGCCTTGACCCATGGGTCCTC GCCGTGACTCTCCCAACAGTTGCACATAAAAATGGTAAAAGTTCTTGAATTTCACAGACAAAATTTTAAATTCTCCAACT GAGTTAACTAGATTTATAAGTGTTAGAAGTCTCACATTGGCTAGAGATATGGTCAAACAAGGGTTTATAAAGGGTATAGC AACCCTCAAGAGCTAGCTTTTTCGGTTGAGTTTGTTAGGCCTCCCTAATTCTAATAATAAAGTTGAGCTGCAATGAAAAA TATTGGAATCAATTAAAAATGAGAGGGGGTATGGTGGTACTTTCTTGTGAATAAGGTGCTTCTCCCGGCGAATATGAGCT CCTCCGTCGTTGAGTCACGCTGGTGGAGGACCTGCAATGACATTTTGACGCTCACACCCTAGTCAGAATATGGGGGGAGA AGTAGTGATGGATAATATGTGTCTACACCTGCCTTTTATAGGTTTCGGTTTTGAAGGTTGTAAGGTCGGTGGGGGAGAGC TGTTGGATCTTCTAACATGCCGTTTAATTGAACGAGTGGGCTTGTTTCTTACTTAGAGAGCCGCGGCCTTCGGATGGGAC ATGATGGATGAGAACAAGTCAAGTTGTGCCCTTCGCCAAGGCAGGTGACTGTGGTGAGGTAATTGATTTGTGGTGGATGC AATCGGTTGTAGTGGATACAAGTGATCGGCCATGGGGTGCAATTGGTTATGGTTGAGTGAAGTGATCGCCATGGGATGCA ATCTGTTGCAGTAAAGGTGATCTATACGCCGGCAAGTCACTCAATAGGGTTCGGGTTGTGTGCCAAGAAGTTTAGGGTTG GGTCCCAGTGACTGGGAACTTGGTAATCGGAGTAAGGGACCGCGGACCGGGTAGTGGAACACGAATCTGTTTTTGTTTCT GGGTCAATAAATCGAATCTGTTCGAGTTTTGTTATTTCTTTGTGGGGGAAGGGTGAACTCAGACTACACACTTAGAGGCT TAGAGCTAACTCAATATACTAAGTGTAACATTTTGGCTTGTCGAACTCTAAATTAGGTATTATTTATTGCATATGATTCC ACTGAAAAAAAAATTACGAACCATGCTGTTGAGATTGTGGTTCTAATCTATTTGCATATATATACTATGGTTTCTGACAT TTCTTAGTACATTTTAGTAGAATGAAAGTATTGAAATAGTTATGATATAATGCTTTTTGTGACTTTGTTTAACCAAATAA TCTTTATTTTTTAGCGGAGACGCCTGGCGGTGATTTTAAGAAGTTCACGAGGAAAAAATCGTCAGCTGTGGAGAGCGCCG AGCTTAGAAGTCCGACCATTTACGATTGGTTCTGTTTTTTTTCCTTCAATTTCTGAAACATGCGGCATTTGCATTTTCAT GGTCTAACTTTTCTTATTGCTGTATATTTTGCAGGATAATTATGAGTGCTTTGGATCGTTGTTGAGAGAGGAAGTGAGAT GTTCATTCGGCAGAGGCAGAGGGATTCCGTTTCCTGTACATATACAACAATAACAACACAGATTCCAATTTCCAATGGGA ATCATATCCTATTGCACATTATGCTTCTTATATTTTATTATTACATATGTATATATTATATAATATCTATGAGTACCTGT TTATATCAAATGGCTCAGATGATGCAGATTGAGCCAATGCTTCTAGGATTCTGAGGATGTAAAGGAGTAAAAAGCCAGCT TCTGCATATATTTGTACATATTGTTTTGTTTTTCATTACTGTGTTTTTGGCTGATTGTAAATATGGATTTTGTACTTTGA TATGTCTATCAATGAAACTCAGTGAAGCTTTATATATATTTCTTTATGTTTCTGCTTTTGTTGGAACTCTGCTAATTCAT TCTGTATTGTCTTCAACACTATTCTTCCATGTTTTATCTTCCCTTTTGGGACCCAACCAATGCTCATTTTTTGAGAATTT TCAGTGAATCATGTTCATGGAAAATGCTACAATGGTTGAGGGTGAATTGACTGACTGTAAAGTATAAACTCAAATGGAGT AATTGTAAAACAAAAACTTATAGCCTCAAGCTATAGATTCAGAAGCCAAAAAGAGCAAATATATTTGTGGAATGTTATGA AAAAAAAAATCGCTTTTAAATTAAAAATGGAGATGATATGAAGTAAGTAGTGCTTGTCTTA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0410800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTTTCTTCACAAGCTCTGGGACGAAACGCTGGCGGGACCCGCACCTGAAACGGGTCTGGGCAAGCTCCGCAAGTA TAATTCTCTTTCCGCCGTCGGAGTTCGGTCTACGGCGGCGGAGGATGTCCCCATCAGCCGCAGCATCACCATTGTTCGCA CCCAATCTGGTTTTAGAACTACCTCCTCCGCCGCCTCGGAACCTGCCTCTCCTTCTCCCCCTTTCACCCCTCGCACCCCA CGTACCCCGGAGACGCCTGGCGGTGATTTTAAGAAGTTCACGAGGAAAAAATCGTCAGCTGTGGAGAGCGCCGAGCTTAG AAGATAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0410800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGFLHKLWDETLAGPAPETGLGKLRKYNSLSAVGVRSTAAEDVPISRSITIVRTQSGFRTTSSAASEPASPSPPFTPRTP RTPETPGGDFKKFTRKKSSAVESAELRR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33565:SF3 View details on PTHR33565:SF3 Search for proteins/transripts with this domain View external data on PTHR33565:SF3	1	104	104	1.0E-33	–
PANTHER	PTHR33565 View details on PTHR33565 Search for proteins/transripts with this domain View external data on PTHR33565	1	104	104	1.0E-33	IPR008406 Show description in modal box View details on IPR008406 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05564 View details on PF05564 Search for proteins/transripts with this domain View external data on PF05564	7	85	79	3.2E-10	IPR008406 Show description in modal box View details on IPR008406 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	55	69	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	55	108	54	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	88	108	21	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0410800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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