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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0410900 |
| Transcript ID | LotjaGi3g1v0410900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor; TAIR: AT3G14180.1 sequence-specific DNA binding transcription factor; Swiss-Prot: sp|Q9LJG8|ASIL2_ARATH Trihelix transcription factor ASIL2; TrEMBL-Plants: tr|A0A1J7GVE0|A0A1J7GVE0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0410900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81459226..81462586) extracted from Lotus japonicus Gifu genome v1.2.
AAGTTACTCACGGAAAATAACTGTAGTCTCACAACACATTTGACATTCCCAAACATGTTGTGTAGCATAAAGAAAAAAAA AAGCAGCAAAACTTTGTCATGTTTATAGTTAGCTTTGGATCTGGTTCAGTTCAACAATATTCATGTAGCATAGTATATAT ACTGAGACCACGAAACAAACTTGACGTCACGTCTCTAAACAGGTAAAGCTGTTATTCAATCCCGTGGGCTCAGTTACCGG TTCCTCTACGCCATTCCTTCTTCAACCGGCTACCCCCACCCAATTTTACATTTCTCTCCCCACTCTTACCATTCCCTAGG TAAGTGCCAAAGGGGTAAAATGGGGATATCGCCGGAGACCATGGAGGCAGGAGCATAGTTTCTCGTCAAAACTCGTGAAC CACACCAACCACGCCGGGTAATAACAGGTCCACCAACTGAGCCGGTGACGGAGTTTGCTAATCTCCTCCAATCAACTTCT TCCACGTCAACTTTCCGTCCTCTGTTCTCCGCCACGTGTCGACGGTCACCGTCAACTCACCCATTTCCAAAAAACAAAAA ATACCGAACATAGCACGAAAAGGCATCGATATATTCATTCATTCATTCTCGCCGGCCAGAAATTCAAAATAAAAATAAAA ATAATCTAAATAAAATGAAAACCCTAACCTCCTTGTGTTTCTCTCTCTAACTTCCTCTCTTTCTCTCTCTAAGAATTTCC ACCGTAGATCGCCGGCGACATGGAGGTTATCAACGACGACGACGAGATCGAGTTCCGCCGATCACCGGCGAGCGGATCTC CGCCGTCGTCTAACGGTCGGATCACGGTGACGGTTGCGGCGCCGGCTCCTCAGGCGCATCCGCATCCGGCGCCGAACACC TTGGCATTAGCGCTTCCGGTTCAGCAGCCGGTGAAGGGGAGCAACGGCGGTGGAGGGAGTGCAGGCGGAGGAGGAGGAGG AGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTGCTGATCGAGGCTTGGGGTGAGAGGTATTTGGAGCTCAGCC GGGGGAATCTGAAGCAGAAGCACTGGAAGGAGGTGGCGGAGATCGTGAGCGGGAGAGAGGATTACTTGAAGACGCCGAAG ACTGATATTCAGTGCAAGAACCGGATCGATACGGTGAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCTCCGCCGCAGG CGGCGGAACAACCAGCAAATGGCCGTTTTATGATCGATTGGACCAGCTGATTGGCCCAACCGCCAAGATCCCCGCCGGGA ACAGTAATTCGCAGCAGCAGAAATTGCCGTTAGGGATCCCGGTCGGAGTTCGCAGCGGTGGTGGTGCTTCGAGTCAGTAT AATTCTCAAAAGCAGCATCAGCAGCAGCAGGAGCAGGAGGAGGATGTTGAGTTGAAGAACCAGAAGATGCAGTACCGGCG TCGTCCTCCTCCGGTGGATTCCGATTCGTCGGAGAGGGAAGTGGTGTCGCCGGTTTCAAGCGACAGTTATCCGCCGGGAA GGTACGAGAGGAAGAGGGCGAGGGTGATGAATTCAAGGGGAGGAAGGAAGGGGAAGGGTTGGGGGAGTGCGGTGAGGGAA TTGACTCAGGCGATTCTCAAGTTTGGGGATGCTTATGAGCAGGCGGAGACGTCGAAGCTGCAGCAGGTGGTGGAGATGGA GAAGCAGAGGATGAAGTTTGCCAAGGACTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAGACTCAGATGGAGATTTCGC AGCTCAAGCTTGCGAGGAAAGAAGGCGGCAACCCGAGCAACCACCACAGCAACAACAATGACAGCAACAACCATAGCAAC AATAGTGACACTGAGTGAGTGATAACTAGGTGAAGTTAGATTCCAATTCCAGTGTATGTGTTTAGTTATGGATTCACCAT CCCTTAATTGTTACAGTTAACTTAGTTGAATTGCTGCTAAATAAGCGAAAAAAAATGCAGAAGAGAAGTGTATGTGCTGA ATAATTTAATGCCATTGCAGCAGATGTACCACTTGTCATGTAATGTGTAACACCATTCTAAGTTATCAGTATCAGGGATC ATATCATCATGGTTGATAGCTCTACTTAGATACATTGTACATATTGGATATGCAACCTGATGGATAGCAATTTAGCACAT CTTGAATTTCCTGCGATAACTTGGAGAAGTTCTATTTCTGACCTGTTTGTATCCTCTAGAATTGTACCATGAATTCAATT AGTGATATAATGTTGTCTACCAGCATGTTAATTGATCTTTTATCTCTTAATTTTAAACATTCAATCCTGTTGAAACTGGC TTGGTAAATGGAGTGGATAACAGATATTGTCCTAATTAATCCCATGGGCAGAAGAAAATAGTCACATTCTGAAAGCGCTC AAGCACCTTAAGAAAGAACTGAAGTGATCTGCACTGCACTTCAAATTGAAGTGATCCCCTGCTAATGTAATTTAAACTCA AATAGGTGAAAATGTGTTTTATCATAAGTACTGATATGAAGGGAATACCTGATTGTTGTGGTGTGTTGAAATTGTATTAA TGCAGTGCAGTTAGTGAATGATTATGGCCCTATATTACACACTGTTCTTCAATACATTAAGTAGTGTTCTTGACTGTAGA GCGTCATTCTATGCTTTGCAGTTGAAACAGCTTAAGAAACTAAAAAAGAAATACATCCTGATGGTTTTATTGAAAGATCA ATACCTAAAATAGCATTGGAATCTGGCACTGATTCATCATTCATATGACCACAAAAAGCTTGCCTCTCAGAGCATAATTC AGCATAGCCCCTGGACATATCTACTAGTACTAGGTAACTAGAACTTGTACTTCACTCTTAGTTGCCCCTAATTTAGACTC ATTCCTTCTTTGAAAGTGTTTCTGCAGGCTGGGTACTGGATTGTGACTGGATCAAAGTTTCAATGATAAGTTTCAGTGCC CATTGAAGAAGAAGGATAACTCAAATTAGAAGGAAAAAAGGTCCTTTGGAAATACTATGCGAAGAAGCTGTAAATTCCAC TGCCCTGAGAATAGAAGAAGAAGCCCACTGGGCTCAGCCTTTTTAAAGATACGAAATCATAGCCCAACTCAGTTGAATAA GGCCTCAGTTAAAGCATTGAAGTTAGTTCTTAGTTCTTAACATTATTCATGTGGGTCCGTACTGCCACATGTGCTTAAGC AACTCTCAAGCAGTTTTGCTCCAACCATGAGTTCTTAGGTAGCGTTTGGTGACGGAACGGAACGGAACAGGACAGAACAG AACGGAACGGGACAGAACAGGATGGAACAGGACAATAATGTTCTATGTGTTGTGTTTGGTAACTCCAAGTGAATAGAACA G
CDS sequence (LotjaGi3g1v0410900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTATCAACGACGACGACGAGATCGAGTTCCGCCGATCACCGGCGAGCGGATCTCCGCCGTCGTCTAACGGTCG GATCACGGTGACGGTTGCGGCGCCGGCTCCTCAGGCGCATCCGCATCCGGCGCCGAACACCTTGGCATTAGCGCTTCCGG TTCAGCAGCCGGTGAAGGGGAGCAACGGCGGTGGAGGGAGTGCAGGCGGAGGAGGAGGAGGAGGGAGGGAGGATTGCTGG AGCGAAGGCGCGACGGCGGTGCTGATCGAGGCTTGGGGTGAGAGGTATTTGGAGCTCAGCCGGGGGAATCTGAAGCAGAA GCACTGGAAGGAGGTGGCGGAGATCGTGAGCGGGAGAGAGGATTACTTGAAGACGCCGAAGACTGATATTCAGTGCAAGA ACCGGATCGATACGGTGAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCTCCGCCGCAGGCGGCGGAACAACCAGCAAA TGGCCGTTTTATGATCGATTGGACCAGCTGATTGGCCCAACCGCCAAGATCCCCGCCGGGAACAGTAATTCGCAGCAGCA GAAATTGCCGTTAGGGATCCCGGTCGGAGTTCGCAGCGGTGGTGGTGCTTCGAGTCAGTATAATTCTCAAAAGCAGCATC AGCAGCAGCAGGAGCAGGAGGAGGATGTTGAGTTGAAGAACCAGAAGATGCAGTACCGGCGTCGTCCTCCTCCGGTGGAT TCCGATTCGTCGGAGAGGGAAGTGGTGTCGCCGGTTTCAAGCGACAGTTATCCGCCGGGAAGGTACGAGAGGAAGAGGGC GAGGGTGATGAATTCAAGGGGAGGAAGGAAGGGGAAGGGTTGGGGGAGTGCGGTGAGGGAATTGACTCAGGCGATTCTCA AGTTTGGGGATGCTTATGAGCAGGCGGAGACGTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTT GCCAAGGACTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAGACTCAGATGGAGATTTCGCAGCTCAAGCTTGCGAGGAA AGAAGGCGGCAACCCGAGCAACCACCACAGCAACAACAATGACAGCAACAACCATAGCAACAATAGTGACACTGAGCTGG GTACTGGATTGTGA
Protein sequence (LotjaGi3g1v0410900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVINDDDEIEFRRSPASGSPPSSNGRITVTVAAPAPQAHPHPAPNTLALALPVQQPVKGSNGGGGSAGGGGGGGREDCW SEGATAVLIEAWGERYLELSRGNLKQKHWKEVAEIVSGREDYLKTPKTDIQCKNRIDTVKKKYKSEKAKISAAGGGTTSK WPFYDRLDQLIGPTAKIPAGNSNSQQQKLPLGIPVGVRSGGGASSQYNSQKQHQQQQEQEEDVELKNQKMQYRRRPPPVD SDSSEREVVSPVSSDSYPPGRYERKRARVMNSRGGRKGKGWGSAVRELTQAILKFGDAYEQAETSKLQQVVEMEKQRMKF AKDLELQRMQFFMKTQMEISQLKLARKEGGNPSNHHSNNNDSNNHSNNSDTELGTGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 13 | 365 | 353 | 2.1E-127 | ||
| PANTHER | 13 | 365 | 353 | 2.1E-127 | – | |
| MobiDBLite | 54 | 77 | 24 | - | – | |
| Pfam | 77 | 170 | 94 | 1.5E-25 | – | |
| MobiDBLite | 173 | 264 | 92 | - | – | |
| MobiDBLite | 176 | 190 | 15 | - | – | |
| Coils | 215 | 235 | 21 | - | – | |
| MobiDBLite | 215 | 242 | 28 | - | – | |
| MobiDBLite | 342 | 377 | 36 | - | – | |
| MobiDBLite | 351 | 377 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0410900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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