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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0411900 |
| Transcript ID | LotjaGi3g1v0411900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Jasmonate zim-domain protein; TAIR: AT1G72450.1 jasmonate-zim-domain protein 6; Swiss-Prot: sp|Q9C9E3|TI11B_ARATH Protein TIFY 11B; TrEMBL-Plants: tr|I3S7F0|I3S7F0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0411900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81592854..81595245) extracted from Lotus japonicus Gifu genome v1.2.
TAGAATTTAGAAGATAAAGACCACATGGTCTCACACCTCTTACTCACAACTCAAACCGAAGCACCTTCACGGAACATGCT TAGGAAACTGCCAATTCTTCCTTCATATTCTCTCTTCTCACCCTCTCAAAAACTTCCTCCATTGAACTGAACACCCTCCT CATCAAACAGATTTTTCTTTTGTAAACAATTTTCTCAGTTCAATACTTTTCTTCTGTGAAAAATTCTGGTGGGAATTCGG TTAAGAATGGCAACTTTCCCAAACACGGTGGCGGATGGCCGGAGCTCCGGCAAGGCACTGGAGAAATCCAACTTCTCACA GACTTGCAGCCTCCTGAGCAAGTTCTTGAAGGAGAAACGTGGTTCTGGAGATTCTGTCTCTGGAATGGGTGGGAAAATGG ATCCTAAAGGTACAATGATAATATTTGTTTCCTTTTTTCTTGTTTGTTATATGAAATTAAAAAAAAAAAAAAATTGCTTT ATTTGAAATTGGGTTTGAAAATTGCTGATGGAGGTGTTGTTTGTGATGGAAATTTCAGCTTGTACGAAAGATTTGTTAGC AAACTTGCAAAAATCAGATGGGACTTTGAGACCAAATGCTTCTTCTGCTATGGATATTCTTCCCCAGCTTGTGGAAAACC CCTGCATTAAGAAGTCTAATGTTAGGTGTGTGACAATTTTAATTTCTGTGATGTTCTTCATTTTCTGATAGGATGTTTGG TTTCCAATTTGAGAGGTTTCAAACCACGGTCAAATCAAAATCATGGTGGACAAGACAAAAGCTTGGGCAAGTTGGTTTTG TCCACGGTGATTTAGGCTTCAAACATGCACTAAGATGAATGTTGATGCCTTTCAATACAAGAGTATATTGTACACATGAA AAAACAGCATTTTGTAGCTTGATCTGTTTAGTTTATAGGTATGAGACTTATGAGTGTTACATGATTATTACAACCTCTTT TTTCTCTTGATTTAGGTCAGCAGGGCCTAAAACACCCCAATTGACAATATTCTATGCTGGAAAACTGTTGGTATTTGATG GTTTTGTGCCTGAGAAGGCAACAGAGGTTATGGAGTTGGCGACCAAGTTAGCATCTGATAGTTCCAGTTCTGAAGAAAAT TCCCCCAAGGCTCCGGTTGTCGCTGAAAAATTGAAGGAATCAAAAGCTCCTCAGACAAACCTGGCCTCAGAAACCTCTCG ACCAGGAAACCAAGCTGTTCGTTCAGGTATTTAATATTTCAATTATCTCCATTTGAACCCAGATAGGAATCACTGCTCCA AGCTAGTAAGATGTTCATACACTAATTCAAGACTACAACTACTTTTGTCTAAACAGATATGAGGTATCCAAGGAGAGCTT CACTTCTTAAATTTCTTGAGAAGAGAAAAGAAAGGTAAGGACTGGTTTTGTATATATTATTTTGGTTACTTTGATTTGGT AACTTTTTGTTACTCAAATTCAATGCTCATTAATTCATTGATTCTTCAATTGTTACAGGGTAATTGCTAAAGGACCTTAC CAAGTTAACAACCCCAAGCATGAGGGTAGCAGTTCAGGAGGTGAACCTGAAGATCAGAGTTCCAAACACTTGGACCTTAA CCTCTAGCATGTTTGAATTTATCTTCAGATCTTCCCAAGTCAGCTCTCCTTCCAACGTGAAAATTTACCATGTATCGGAA CAACAACAACACGGACATGTAGTGGTTTAGCCCATCTTGAATTTAGGATATACAGGCTCTGTGCCCACTCAAAATACCCT CCTAACTTCTGTGATTGCAGGCCTTTTGCAGAGATTGTTGTGGCCTTCATACATATATGATATCTATAGTATATATTTGT TTTTATAATGTATCAATGAGGTCCAACGCTTTGGACCAAACCAGAGTTAGTATAGTTTTGTTGTTGAGATTGATTAGTTT CAGAAAATTCCCAAGTATTTGTGCATTATTTCACCGATTATATGTGCTCCCGAATCCCGATTTATAGGCTTAATTTCCAT GACTGTATTTTTTTTTGAAATCCAGATATTTAGATAAGAAATATAAGAGACTTTAGTCCTGCAAAATGATTACACGGGGA AACAAAACGAAAACCTCAAGCCACCCCTAATAGAAAAACGAAAAACAACCCTACACCTAAGAGCAAAGAACCAAACGCAA AAAACAAACAGAACTAAAACCAATAGCCTAAACCAAAAACAAAACCAAGAAGTAACAAGAACACAACAACACTTAATACG TTCATTGCTTATACAATTCCACTTCCCTTGCACATATATATAACCTCATCATAACTATCCTCAAACTCCAAACCTAAAAA TTTGCCTAGAAACCATGCATTCTTAGCATGCGTGAAGTAACCACCATAACGAGCACTACTAGGCTCCAATGG
CDS sequence (LotjaGi3g1v0411900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTTTCCCAAACACGGTGGCGGATGGCCGGAGCTCCGGCAAGGCACTGGAGAAATCCAACTTCTCACAGACTTG CAGCCTCCTGAGCAAGTTCTTGAAGGAGAAACGTGGTTCTGGAGATTCTGTCTCTGGAATGGGTGGGAAAATGGATCCTA AAGCTTGTACGAAAGATTTGTTAGCAAACTTGCAAAAATCAGATGGGACTTTGAGACCAAATGCTTCTTCTGCTATGGAT ATTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATGTTAGGTCAGCAGGGCCTAAAACACCCCAATTGAC AATATTCTATGCTGGAAAACTGTTGGTATTTGATGGTTTTGTGCCTGAGAAGGCAACAGAGGTTATGGAGTTGGCGACCA AGTTAGCATCTGATAGTTCCAGTTCTGAAGAAAATTCCCCCAAGGCTCCGGTTGTCGCTGAAAAATTGAAGGAATCAAAA GCTCCTCAGACAAACCTGGCCTCAGAAACCTCTCGACCAGGAAACCAAGCTGTTCGTTCAGATATGAGGTATCCAAGGAG AGCTTCACTTCTTAAATTTCTTGAGAAGAGAAAAGAAAGGGTAATTGCTAAAGGACCTTACCAAGTTAACAACCCCAAGC ATGAGGGTAGCAGTTCAGGAGGTGAACCTGAAGATCAGAGTTCCAAACACTTGGACCTTAACCTCTAG
Protein sequence (LotjaGi3g1v0411900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATFPNTVADGRSSGKALEKSNFSQTCSLLSKFLKEKRGSGDSVSGMGGKMDPKACTKDLLANLQKSDGTLRPNASSAMD ILPQLVENPCIKKSNVRSAGPKTPQLTIFYAGKLLVFDGFVPEKATEVMELATKLASDSSSSEENSPKAPVVAEKLKESK APQTNLASETSRPGNQAVRSDMRYPRRASLLKFLEKRKERVIAKGPYQVNNPKHEGSSSGGEPEDQSSKHLDLNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 235 | 235 | 2.0E-117 | – | |
| PANTHER | 1 | 235 | 235 | 2.0E-117 | ||
| ProSiteProfiles | 99 | 134 | 36 | 14.8 | ||
| SMART | 99 | 134 | 36 | 6.6E-11 | ||
| Pfam | 101 | 132 | 32 | 5.4E-13 | ||
| MobiDBLite | 134 | 183 | 50 | - | – | |
| MobiDBLite | 161 | 177 | 17 | - | – | |
| Pfam | 186 | 208 | 23 | 5.8E-9 | ||
| MobiDBLite | 202 | 235 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0411900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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