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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0414700 |
| Transcript ID | LotjaGi3g1v0414700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (DUF594); TAIR: AT5G45470.1 transmembrane protein, putative (DUF594); Swiss-Prot: sp|Q19775|PPM1_CAEEL Protein phosphatase ppm-1; TrEMBL-Plants: tr|G7L7I0|G7L7I0_MEDTR DUF594 family protein; Found in the gene: LotjaGi3g1v0414700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81980183..81980668) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGTATCTTATAGTTATGAGACCATCCATGCTACCTAATGGGATTGGTGAGATCAGGTTCCAAGACACATGCGCTGA AGCAACTGAATTTGTGAAGGACAAATATTCCATACATACCGAGAAGGAAGTTTGCATAAAGCTACTCGGACTTTGCAGAC AGATTGAGAAAGTGAGTCCTTCAAAGGTGAAAGGCGATAGGAGCAAGTCTGTGCTATTTGATGCTTGCAGGTTGGCAAAA CATATAAGAAAGCTAAGGGAAGATGAAAGCTGGAAAGAAAAAGCGATGTGGGAGTTAATCACTCAAGTGTGGGTTGAAAT GCTTGCTTATGCTGCTAGCCATTGTCAAGGAATTCATCATGCTCACGAGCTCAGACAATGTGGAGAACTCCTCACACATG TATGGCTTCTTATGGCACATCTTGGTATAACAGATCGACTTCAAACCTCTAAGGGGTTTGGAAGAGCAAAGTTGATACGT AAGTGA
CDS sequence (LotjaGi3g1v0414700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTATCTTATAGTTATGAGACCATCCATGCTACCTAATGGGATTGGTGAGATCAGGTTCCAAGACACATGCGCTGA AGCAACTGAATTTGTGAAGGACAAATATTCCATACATACCGAGAAGGAAGTTTGCATAAAGCTACTCGGACTTTGCAGAC AGATTGAGAAAGTGAGTCCTTCAAAGGTGAAAGGCGATAGGAGCAAGTCTGTGCTATTTGATGCTTGCAGGTTGGCAAAA CATATAAGAAAGCTAAGGGAAGATGAAAGCTGGAAAGAAAAAGCGATGTGGGAGTTAATCACTCAAGTGTGGGTTGAAAT GCTTGCTTATGCTGCTAGCCATTGTCAAGGAATTCATCATGCTCACGAGCTCAGACAATGTGGAGAACTCCTCACACATG TATGGCTTCTTATGGCACATCTTGGTATAACAGATCGACTTCAAACCTCTAAGGGGTTTGGAAGAGCAAAGTTGATACGT AAGTGA
Protein sequence (LotjaGi3g1v0414700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYLIVMRPSMLPNGIGEIRFQDTCAEATEFVKDKYSIHTEKEVCIKLLGLCRQIEKVSPSKVKGDRSKSVLFDACRLAK HIRKLREDESWKEKAMWELITQVWVEMLAYAASHCQGIHHAHELRQCGELLTHVWLLMAHLGITDRLQTSKGFGRAKLIR K
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 149 | 149 | 5.3E-42 | – | |
| PANTHER | 1 | 149 | 149 | 5.3E-42 | – | |
| Pfam | 91 | 143 | 53 | 1.3E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0414700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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