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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0421000 |
| Transcript ID | LotjaGi3g1v0421000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF3511 domain protein; TAIR: AT5G11970.1 ABC family ABC transporter, putative (DUF3511); Swiss-Prot: sp|O70394|I27RA_MOUSE Interleukin-27 receptor subunit alpha; TrEMBL-Plants: tr|A0A0B2RL67|A0A0B2RL67_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0421000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82944140..82945424) extracted from Lotus japonicus Gifu genome v1.2.
ACCTACATCTCCTATATTGCATATGTTAAAGACACAAGCATGTGGCGAACCATTAAGGTACTATTCAAGGCGTGGACTCA ATTAACTAATATTCATAATGTTCTGTGTTTTGTGATTATGAATTGAGATTGGTTTTAGAGTTTTGTGAAACATACAACAA AAATGGGAGCACGCTCCTCTGTCTCATATAACTTGAATTTTGTATCTCTCAAACACCTAGGTTTATGTAATTACTCGTAT AACATGATATTCAGATGCCACTAGATTTTCTGATAAATGTTAAGTTTAATTTCAAGTTACCTATGAGTAGAAAATTGAAA CCCATTTGCTTTTAAAAGCATTGGTAATCTGTTTAAATAGTTTGTGTACGAATCATTTTCCTAAACAATACCAATAAAAT ACAACTTGGAATAGCAAATTAGAATCATTTTCCCAAACAATACCAATAAAATACAACTTGGAATAGCAAATTGGACCAAT AAGTAACTTCATTCTCTCAGTCATCTTAAAATACATACTTAGTGTTTTACTCTTGAGTGGTCAGGTTCTCATCATGGAAT TTAGATCCAAATCATGCAGGGATGAAAGTCTGCAGACAGAAAGCTACACTGGAGGCAAGGTGGCCCCAACAAGGATGCAA GATCTAAGGTGTTATAGTGCAAATTATGCTGGTATGGAGGTGAAGATAGAGAAAGGGAAAAGCAGAGTTGGTAGAGCATC AACAAGTTGGAGCTTGAATGATCCAGAGTTGCAGAGGAAGAAGAGAGTAGCTGGCTATAAAATATATGCTGTTGAGGGGA AAATGAAAGGGTCTCTCAGGAAGAGTTTCAGGTGGATCAAGAATAGATGCAACCAAGTTGTCTATGGATGGTGGTGATTA ACAGGTTCATACTCTATATTATATAACAGCCTCGGCTCCTCTAAAGTGAGAAATTCACTTTTTATATAACATACTACTTC TTAATATGTTTTGTTTTCTGTTTGTGATTTACTAACTGTAATTTAGATGCTAAATGTATTTGAATTAAGTTTCCTATGCT AAGAGAAGTTAAAATCCATTCATGTATGGAAGGAACTCTATAGCTTATACATAGTGTCATCCTGCTTGTTCCTCTAACTA AGCTTTCAGGGAGGCATGATCTGTAAATATTTGCAGGTTAATGCTGAATTTCCTAATCCTCAGTTTAAACTCAAGTAATA CTACTGATTTTGATATAGTATATGGTTGTTTGCTTCGGAGTTATATGCTGAGTTATATGCTGCTGATGTGATATCTAGTT ATTTC
CDS sequence (LotjaGi3g1v0421000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGAACCATTAAGGTTCTCATCATGGAATTTAGATCCAAATCATGCAGGGATGAAAGTCTGCAGACAGAAAGCTA CACTGGAGGCAAGGTGGCCCCAACAAGGATGCAAGATCTAAGGTGTTATAGTGCAAATTATGCTGGTATGGAGGTGAAGA TAGAGAAAGGGAAAAGCAGAGTTGGTAGAGCATCAACAAGTTGGAGCTTGAATGATCCAGAGTTGCAGAGGAAGAAGAGA GTAGCTGGCTATAAAATATATGCTGTTGAGGGGAAAATGAAAGGGTCTCTCAGGAAGAGTTTCAGGTGGATCAAGAATAG ATGCAACCAAGTTGTCTATGGATGGTGGTGA
Protein sequence (LotjaGi3g1v0421000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRTIKVLIMEFRSKSCRDESLQTESYTGGKVAPTRMQDLRCYSANYAGMEVKIEKGKSRVGRASTSWSLNDPELQRKKR VAGYKIYAVEGKMKGSLRKSFRWIKNRCNQVVYGWW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 113 | 104 | 7.0E-39 | – | |
| PANTHER | 10 | 113 | 104 | 7.0E-39 | – | |
| Pfam | 70 | 114 | 45 | 4.1E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0421000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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