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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0424600 |
| Transcript ID | LotjaGi3g1v0424600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|A0A0B2RYL3|A0A0B2RYL3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0424600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83389928..83392825) extracted from Lotus japonicus Gifu genome v1.2.
GGTGAGGAATAGGAAGAAGATGCAGAACCCTAGTCTCCCTCTCCCTGAGGATTTGATACATAAAATTCTATTGAGATTGC CGGTGAGATCTCTGTCACGCTTGAAACGTGTTTGTAAATCATGGCATTCTCTTAAATGGAGCTCTTCATTGGTTGAATTA CTCTTCTAATGAAGACAATCTGTCATAATTGCTTTTGATTTGATAGGAAAGAGTTCATTTGAGATTCCTTTACCATATGG TATAGATATGGAAGGAGTTCATCTGACGGTAATGGGAGATTGTCTTTGTTTGTGTTATACTGGTAGTATTGATCTTGCAG CGGCTGTAAAATGGATGATGAAAGAGTATAAAGTGCGGTCATCTTGGACTGAGTCATTTGTTCTGCCCACTTGTGAAATT CCTTATCACTCCTTTCTTCCATTATGCTTCACCAAATCTGAAGGATTATTTGGAACAAATTGCAATGGAATATTAGTGAG ATTTAATAGCAAAGGTGTTTTAATTGAAGATGCCGAGGGCGAATTCAAAACGTGTCTATTTCGGTCTGCTATGTATAGAG AAAGCCTACTCTCCCTCCCTGGTACTTTGGGGAATTAAGTAATTATGGCCAACAATAATAGACAAGATGTCTTTCAGGGT ACGCATTGCTCTTCTATCCTCTGCACCATTTTTTTCCTACTCATCATGCACTATGAAAATGAAAAAGGTATATTAGCAGA ATGCATAGTAAATGGAAATGCTTAAACTATCTTGTACTTTTCCCTTCCTAGAGAATCTTTCAATATTAGAAAACTGATAC ATGAAATTGCAAAAAACAAAATGAGGTTTTCTTGTGGGAATTCACAAATGGTTTGGGGAAAAAATATTTGATGTCTTGCT TATTGAGTGAAAATTATTCTGACTAATCAAATGCTATTTTAGTGGAAATTATATAAGAAAAACAACTAATGTTTTGAGTA GAACATTTAGGATTCTGGTGAGATTTACAACATTACATTTTTCAAACTTAAAGCTAATAAAATGTCTAATATGGTGACAT TCACAATTAGCTCGTCTTTAATGGTTCTAGCAGGCCAAAATTATGTTGATAGCTTAGCTTTCCCTCAAATGATAATGCTG TTTGGAAGATGCTGTACATTACACATATGATATATCAGTGTACAACTAGTGGTTAGTAGTTATTTCAGGGAAGTTTTGAG TGTAAACGGACTTCGGAATTTACTTATGTTTCAAAGTAGGAGTTAGTGAATCCCCCTGCTTATAGGTGCACCCATACTCG TCACTGTTTCACTCCACCCTCTCGCACAACACTATAATTTAGGACAAGGTCCCCTGCTTCGCCTATGTGCTCGTTACTGG TAAGCTAACCCTCTCGCGTGCATGACAGCGTCACCCCGACATCTTCTACCGCGTCTCCTTCTTCCCCTTCTCTTGCTCAC TAGACTTCCAGCAACCTGCTCATGACGATCACCATTTCGTTCTTCCCAACTAGTCACTTGTTAAACAGTTTCCTTCTTCT CTTTCTTTTCTTTTCCTTGTTTGGGTTTTATCTTCCTTTGGAACTAGACATGGCCTTTTTCACTTTCATTTTTGTATATC ATATATCATTGTAGGCATGCCCTGCATATGCCATGATATGCCCTCTATCGTTTCAATTGATAATCATCCGTGAAGCCAAT TTTTTGGGATCCTTTATCTTACTATTCTGCACTTATTTGTAAATACATCCCGCATGTTTGCTGAAATGCGTATTAGACAC TATATGATACAAAAGGTGTATTAAGTTACACTAATAGACTTAAGGTATCAAATTAGCAGTAAATAATGCTTCTAAAATTC AGTTGACACTGCTATGTGCAGAGATGTGTAGAACCGTTTCACCATCAAATGGTGTGGTTGCTGTAAAAAAGATTATAGTA CTCTTTTAGTCAATAACTGCATGTGTGCATGTCTTTGCCACTTTCAAGTTGGTGAAAAAGAAAATAGAAACTTATTACTT GTTAAAATAAAAATTATAACTTAGGGTAGAAGTTTTCTAGTTATGTAACTTCTAGTTAGAAAATAGTTAAAATTTGGAAT ATTTGCTGTCACAACTTGTTTGTTATGTAACTTTGTAAAGGTTTTGTTAAAATGGTGGCAATTTGGCATCAGAACAACAC CTTCTAATTTTGTCTTATATCCAATATGTCTATATATTCTATTCTATATCTCAAGGACAATTTTGCTATCAAGAAGCTAT AGCATCTTACATCTGACTTAAATTGTTTCATCACGAAAATACTGATAATATCGATGTATAATGCCATGTGCAATCCATTT TTTTTCTTTTTTTTGCCAGGGGTGGGGAAAGAGAAGATCTTTCCACTTGCAGGTTCAAACCCTGCATCTCTAGAATGTCT CACCCAGCTCTTTTACCACTTGTGCTATCTAGCGGGGACTAATCAAATTTCATTATCTGAACAGAACAACTGAGGCTCAA TGGGCTGAAAGTGGTATTAGTTATGCAGACTTGTATTACATCACATCGCTGGAATTCTCAAACTAGCAGGGTTTCTGTTT AGTTTTCTTTTCATACTTGAAACAATCATTGTTGCTAAATTTCGTTCTATAATGATCAAGTTATTAATGCTACTCACTGG TAGGTGAGTGCTGATTTTATCCGTAGATTATAATTCCCATTTGTTCTGAGGCAGTTATATTTACATATGCAAGCACACAT GTTCCTGGAAGCCTATTGTTAGTATTTTGTTTGGTTTTGGGGTGGTAAATTTCAATGTTACATGTGCTCGTGTTAATTAA TATTTTCTGAACCTTCACTGCTTGTAGTTTGAGTTTGGCTTGGCAGAGGTTATGTTCAATATTATGGCTTTCCTTTGATT ACTTATAATAGTGTTCAA
CDS sequence (LotjaGi3g1v0424600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAGTTCATCTGACGGTAATGGGAGATTGTCTTTGTTTGTGTTATACTGGTAGTATTGATCTTGCAGCGGCTGT AAAATGGATGATGAAAGAGTATAAAGTGCGGTCATCTTGGACTGAGTCATTTGTTCTGCCCACTTGTGAAATTCCTTATC ACTCCTTTCTTCCATTATGCTTCACCAAATCTGAAGGATTATTTGGAACAAATTGCAATGGAATATTAGTGAGATTTAAT AGCAAAGGTGTTTTAATTGAAGATGCCGAGGGCGAATTCAAAACGTGTCTATTTCGGTCTGCTATGTATAGAGAAAGCCT ACTCTCCCTCCCTGGTACTTTGGGGAATTAA
Protein sequence (LotjaGi3g1v0424600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGVHLTVMGDCLCLCYTGSIDLAAAVKWMMKEYKVRSSWTESFVLPTCEIPYHSFLPLCFTKSEGLFGTNCNGILVRFN SKGVLIEDAEGEFKTCLFRSAMYRESLLSLPGTLGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 108 | 104 | 6.1E-13 | – | |
| PANTHER | 5 | 108 | 104 | 6.1E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0424600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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