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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0430700 |
| Transcript ID | LotjaGi3g1v0430700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | vacuolar sorting-associated protein (DUF946); TAIR: AT2G44260.1 DUF946 family protein (DUF946); Swiss-Prot: sp|Q06466|TDA6_YEAST Putative vacuolar protein sorting-associated protein TDA6; TrEMBL-Plants: tr|I1MJE2|I1MJE2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84221811..84224411) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAGTAAGTTCAATGACAAATTTCTCGGCATCTAACACTTTTAGGAAAACCATTCACTCCATTGGTTAACATGGTTGT TTAGCAACAAGAAGTTTCGTATGGGAACATACTGAAGCTGGTCTATATATATCATGATAGTAAACTTGCACGTTTCTATA TATTTCAATTATTATTATTAAACAATCGCATTGGCCATGCTGTTTCACCATATATATAGTGACCAATAAGTGAGACTTAT TGCTAACACACAGTACTCAATCTCATTTGTCCTTGGAAATCTCAAAAATGGGGAATCTAGTCTCTTCTGGCAAGAAAGAA ACTCTTCCCATTGACACCACATTTAAGCTTCCAGCAAATATACCAGTTTGGCCACAAGGTATAAATATCCTCTTCCCTTT CTTCTTGATACTTAGTGCTGTTATTCACTTCAGCTGCTATGTTATACAATTGATTCTAAAATCAGAATCAATTTTGCAAA GAATCTTAGCTTAGTTTCTGAATGTCATAATTGATGATTCTGAGTGGAAAAAATAAGCAGATTCGAACAGCTTCTTATGT TTGAATTACAACTTTCCATGCAGGTGATGGATTTGCTAGTGGAATCATTGATCTAGGTGATGTGAAAGTGTCTCAAATTT CAACATTTAAAAAAGTCTGGACAACCTTAGAAGGAGGACCAGATAATGCAGGGGCTACTTTCTTTGAGCCAACAGAATTA CCTGAAGGATTCTTCACACTAGGCTTCTACAGCCAACCCAACAACAAACCTCTTTTTGGATCTGTTCTGGTGGCAAAAGA TGATTCTCCATCTGATAATGAAGCTTTAAAGAAACCAGTTGATTACACACTGGTATGGAGCAGCAATTCCAAAAAGATCA AGCAAGACAAGGATGGTTATGTTTGGTTACCAACAGCACCTGATGGCTATAAATCCTTAGGCCATGTTGTCACCACCACA GCAGAGAAGCCTTCCCTTGACAGAATCAGGTGTGTCAGGTCAGATCTCACAGACCAATGTGAGACAAACTCATGGATTTG GGGACCAAGCAAGAAAATTGATGACAAAGGTTTCAATGTCTATGATGTAAGACCAAGCAACAGAGGTACTCAAGCTCCTA GTGTTCTTGTAGGAACTTTTTTAGCCCATGTTGGTAGCAATAACCCTCTCCCAATTGCTTGTTTGAAAAACACAAACATG AATTTCTCCTCCTCCATGCCTAACATAGACCAAATTCAAGCATTGGCCCAAGCTTACTCTCCATTCATGTACTTGCATCC TGATGAAAAATACCAACCTGCTTCTACTAAATGGTATTTCACAAATGGGGCATTGCTTTATAAGAAAGGGGAAGAATCCA AACCAGTGCCAATAGACCCTACAGGCTCTAACCTTCCTCAGGATAGCAACAATGATGGTGCCTATTGGCTGGACCTTCCA GCAGACGAATCCAACAGAGAGAAGGTCAAGAAAGGAGATTTCAAAAACTCCCAAGCTTACATTCATGTGAAACCCATGTT TGGTGGAACATTCACTGATCTAGCCATGTGGATTTTCTATCCATTCAATGGTCCTGGAACATTGAAACTTGGCCTAATAG ATAAAATCCCACTGGGGAAAATTGGTGAACACGTGGGGGACTGGGAACATGTGACATTGAGGGTCAGCAATTTCAATGGA GAGTTGAAGAAAGTTTTTTTCTCACAACACAGTAATGGTCAATGGGTGGATTCCTCTGAGGTTGAGTTCCAAAATGGGAA CAAACCAGTTGTTTATTGCTCATTGAATGGGCATGCTTTGTACCCAAAAGCTGGACTTGTTCTACAAGGGACTAGTAGTG TAGGAATAAGGAATGAAACTGCTAAGAGTAACATGGTGGTGGATTTGGGAGTGAATTGTGAAATTGTTTCAGGGGAGTAT TTGGGATCAGTGATCACTGAGCCACCATGGTTGAACTATTTCAGGCATTGGGGACCAAACATTAGCTATGACATTGCTGA AGAGTTTAACAAGTTGGAGAAGGTGGTTCCTGCTTTGAAAGCTGTTGAAAATGGCTTGCCTAATGAGCTGTTGGGAGAGG AAGGACCCACTGGGCCAAAGCTCAAAAGAAATTGGAATGGTGATGAGGTTTGAATGGCTTGGTGGCATTATTCAGACCAA GGAAAAACAAAATTATGGTTGGTTGGTTGGTTGTATTGTATTCATTATTGGTTGACAAAACAGAAATAGTATCCATGTAA CTTCAACTTCAAGGTTCACATAGAAACATGTGTTATGTAGCAATATCCGACAATGTTGTATCTTTGTGTTCAGACATATT TATTCTGTAATTTCTCTGAAATACTTTTTTACTAGTGATGAATGAATTCCAGAAATAAAGAAGAACAGTAAGAAGATGAC ATGTAGGCTCATGTATTACATAAACTTTTTTATATTATATGCTCTAATATATTATTACTATATGTTCTGTTTTCTTTATT CGCTAAGATTATATTAGTCTCGCAAGTCGCATTACTTTTGTCGTCATTAGATCTATGCAAATGACCACAAATACATTATT GTAGATGCTTGACCACCCCTGATCCTCAAACTAAGTCATCG
CDS sequence (LotjaGi3g1v0430700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATCTAGTCTCTTCTGGCAAGAAAGAAACTCTTCCCATTGACACCACATTTAAGCTTCCAGCAAATATACCAGT TTGGCCACAAGGTGATGGATTTGCTAGTGGAATCATTGATCTAGGTGATGTGAAAGTGTCTCAAATTTCAACATTTAAAA AAGTCTGGACAACCTTAGAAGGAGGACCAGATAATGCAGGGGCTACTTTCTTTGAGCCAACAGAATTACCTGAAGGATTC TTCACACTAGGCTTCTACAGCCAACCCAACAACAAACCTCTTTTTGGATCTGTTCTGGTGGCAAAAGATGATTCTCCATC TGATAATGAAGCTTTAAAGAAACCAGTTGATTACACACTGGTATGGAGCAGCAATTCCAAAAAGATCAAGCAAGACAAGG ATGGTTATGTTTGGTTACCAACAGCACCTGATGGCTATAAATCCTTAGGCCATGTTGTCACCACCACAGCAGAGAAGCCT TCCCTTGACAGAATCAGGTGTGTCAGGTCAGATCTCACAGACCAATGTGAGACAAACTCATGGATTTGGGGACCAAGCAA GAAAATTGATGACAAAGGTTTCAATGTCTATGATGTAAGACCAAGCAACAGAGGTACTCAAGCTCCTAGTGTTCTTGTAG GAACTTTTTTAGCCCATGTTGGTAGCAATAACCCTCTCCCAATTGCTTGTTTGAAAAACACAAACATGAATTTCTCCTCC TCCATGCCTAACATAGACCAAATTCAAGCATTGGCCCAAGCTTACTCTCCATTCATGTACTTGCATCCTGATGAAAAATA CCAACCTGCTTCTACTAAATGGTATTTCACAAATGGGGCATTGCTTTATAAGAAAGGGGAAGAATCCAAACCAGTGCCAA TAGACCCTACAGGCTCTAACCTTCCTCAGGATAGCAACAATGATGGTGCCTATTGGCTGGACCTTCCAGCAGACGAATCC AACAGAGAGAAGGTCAAGAAAGGAGATTTCAAAAACTCCCAAGCTTACATTCATGTGAAACCCATGTTTGGTGGAACATT CACTGATCTAGCCATGTGGATTTTCTATCCATTCAATGGTCCTGGAACATTGAAACTTGGCCTAATAGATAAAATCCCAC TGGGGAAAATTGGTGAACACGTGGGGGACTGGGAACATGTGACATTGAGGGTCAGCAATTTCAATGGAGAGTTGAAGAAA GTTTTTTTCTCACAACACAGTAATGGTCAATGGGTGGATTCCTCTGAGGTTGAGTTCCAAAATGGGAACAAACCAGTTGT TTATTGCTCATTGAATGGGCATGCTTTGTACCCAAAAGCTGGACTTGTTCTACAAGGGACTAGTAGTGTAGGAATAAGGA ATGAAACTGCTAAGAGTAACATGGTGGTGGATTTGGGAGTGAATTGTGAAATTGTTTCAGGGGAGTATTTGGGATCAGTG ATCACTGAGCCACCATGGTTGAACTATTTCAGGCATTGGGGACCAAACATTAGCTATGACATTGCTGAAGAGTTTAACAA GTTGGAGAAGGTGGTTCCTGCTTTGAAAGCTGTTGAAAATGGCTTGCCTAATGAGCTGTTGGGAGAGGAAGGACCCACTG GGCCAAAGCTCAAAAGAAATTGGAATGGTGATGAGGTTTGA
Protein sequence (LotjaGi3g1v0430700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNLVSSGKKETLPIDTTFKLPANIPVWPQGDGFASGIIDLGDVKVSQISTFKKVWTTLEGGPDNAGATFFEPTELPEGF FTLGFYSQPNNKPLFGSVLVAKDDSPSDNEALKKPVDYTLVWSSNSKKIKQDKDGYVWLPTAPDGYKSLGHVVTTTAEKP SLDRIRCVRSDLTDQCETNSWIWGPSKKIDDKGFNVYDVRPSNRGTQAPSVLVGTFLAHVGSNNPLPIACLKNTNMNFSS SMPNIDQIQALAQAYSPFMYLHPDEKYQPASTKWYFTNGALLYKKGEESKPVPIDPTGSNLPQDSNNDGAYWLDLPADES NREKVKKGDFKNSQAYIHVKPMFGGTFTDLAMWIFYPFNGPGTLKLGLIDKIPLGKIGEHVGDWEHVTLRVSNFNGELKK VFFSQHSNGQWVDSSEVEFQNGNKPVVYCSLNGHALYPKAGLVLQGTSSVGIRNETAKSNMVVDLGVNCEIVSGEYLGSV ITEPPWLNYFRHWGPNISYDIAEEFNKLEKVVPALKAVENGLPNELLGEEGPTGPKLKRNWNGDEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 16 | 545 | 530 | 8.0E-248 | ||
| MobiDBLite | 526 | 546 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0430700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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