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LotjaGi3g1v0430900.4

Overview

Field Value
Gene ID LotjaGi3g1v0430900
Transcript ID LotjaGi3g1v0430900.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description BEACH domain-containing protein; TAIR: AT2G45540.2 WD-40 repeat family protein / beige-like protein; Swiss-Prot: sp|F4IG73|BCHC2_ARATH BEACH domain-containing protein C2; TrEMBL-Plants: tr|A0A1J7FPD1|A0A1J7FPD1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:84238829..84239190) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGAAAGCTATGAGTGAAAAGGAATCAATGGGACCAGCTTGCACTTTTGAGTTTGATGGTGAAAGTTCTGGTTTGCT CGGTCCAGGTGAGAGTCGCTGGCCATTTATCAATGGGTATGCATTTGCAACATGGATCTACATCGAATCATTTGCTGATG CAGTAAATACAGCTACAGTTGCTGCTGCAATTGCTGCAGCTGCATCAGCTAAGTCAGGTAAATCATCAGCTATGTCAGCT GCAGCAGCAGCTAGTGCACTTGCTGGTGAAGGTACAGCACACATGCCACGGTTATTCAGTTTTTTATCTGCTGATAATCT GGGTATAGAGGCTTATTTTCACGCTCAATTTTTGGTTGTTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0430900.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAAGCTATGAGTGAAAAGGAATCAATGGGACCAGCTTGCACTTTTGAGTTTGATGGTGAAAGTTCTGGTTTGCT CGGTCCAGGTGAGAGTCGCTGGCCATTTATCAATGGGTATGCATTTGCAACATGGATCTACATCGAATCATTTGCTGATG CAGTAAATACAGCTACAGTTGCTGCTGCAATTGCTGCAGCTGCATCAGCTAAGTCAGGTAAATCATCAGCTATGTCAGCT GCAGCAGCAGCTAGTGCACTTGCTGGTGAAGGTACAAGAGGCTTATTTTCACGCTCAATTTTTGGTTGTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0430900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKAMSEKESMGPACTFEFDGESSGLLGPGESRWPFINGYAFATWIYIESFADAVNTATVAAAIAAAASAKSGKSSAMSA AAAASALAGEGTRGLFSRSIFGC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13743:SF130
1 94 94 5.9E-54 –
PANTHER
PTHR13743
1 94 94 5.9E-54 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0430900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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