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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0433700 |
| Transcript ID | LotjaGi3g1v0433700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1442 family protein; TAIR: AT5G62280.1 DUF1442 family protein (DUF1442); Swiss-Prot: sp|Q9X232|GREA_THEMA Transcription elongation factor GreA; TrEMBL-Plants: tr|A0A151TBS0|A0A151TBS0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0433700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84516560..84518697) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTATATAATATATATACTGTAGAATTAATGTAAAAGTACATTATAATCATAATATTAACATATAAAGACTCAAAAA CTGATACTAGCTTACAAACTCATGTTACAGGAGGCTTTTTTACTGTGTATATTAATGTAAAATTTTATTAGCTTCTCAGC AAACGGGTCAAATGAGTTTGCATCATGTTGTTTAATATAATGAACTGAGGGAAACTCAGATCAGATCTCAGATTCCATCT TATGATCTTAATCATCATGATATTAGCAAAGGAAAAGAAAAATTCCCTCAGGTATGCCATAACGTGTGTGTGTGTGTGTG CGCTTTTTGTATGTATATGAGAGAGAATCCACCATGCTAAATTTATGTATATTTATCTTTTAGCGAGACTTTCAACAAAA TTGGTGCCTGTTTGGACGGCACAATTCAGAGGAATCTACTACAATAGTAGCCTCCCCCAGTTGCTTACTTGCTTCAAGGC TCACAAGTCCATAAAAAGCTGAGTTTTTGAATATCTTAAAACAATTTAATTCATACAAGATTATTTTACTGATTACTTGT CAATTCTCATGTTTAAATCTATTGTTAATTGAACAAGTATTAAAAGAAAAACTCCTCTGTTTCTTCCTATACAGGTATGA TCCACCGGAGGTATTCGAGCCGGAAACATCTACATCGAGACTAGCTCTCCAGGATAGAGGTTTGTTCCATTGCATAAGAC TTGAACTCGAGACATTTCTCAAGGAGAATCAATTATGGAACACTTAAAATATTATATATGGTGGGGCTAACTCTCCTTTA GATGAAAATTAATTTGAACTGATATCAAAAGATGTACTCTCACAAAAATGAAGACATCTAGCTACATAATTGAGAGTAGG AAATTGTAACTTCATATGAGAAGAATTCAAATTTAAATTACACATGGGTTGATTCAATTAAATATTGGAGCCAGATACCA CATTTGTATATATAAATGCTGATAGGTACTCAACAACTTGAAGCGACAGTTTTCTCCCATCAAAGATAACTTCAAATTAA ACCCAAAGAAATCTGCAATAGCATGTCTGGTTGGTCCGCTGAGAAAGCCAAGAGAGCTTATATCCAGGCTCTCAAAATGG TAAGCAACAGGAGCATGTCTTATACTTTGAATCTGTTACACTCTAAGAAAATTATACTCTCCAATAAATGAAGATGGTTA TGCTTTGCCTTGTGTCACTCTCTTTTGTGACTTGACCTTTTTCTTTGATTTTACAGGCCAAAAAGGGCAAAGAACCTGAT GTAGCTGAGTTCATATCTGCCCTTGCAGCAGGCAATAATGCACAGCTCATGGTGGTGGCCAATGCCGGAGTGGCTGGGCC TGCCACACTGGCGCTGGCTGCAGCCGCACACCAGACCGCTGGCCGTGCGGTGTGTGTTTGTTGCGGGGAGAATGAATTGC AAGCATCAAAAAAGGCTCTGGGAGTTCATAGACATGGTCTTGAGTTTGTTGTGGGAGATGCTAAGTGCCTTCTCCTAGGT GATTACAAAGGAGCTGATTGTGTGCTAGTAGATTGTGACATCACTAGTGCAAAGGAAGTTTTTGTAGCAGCATTGAAAGG GGCTAACAAAGATGGGGCAATTGTGGTTGGGTATAATATTAGGCACAGGGCATCAAGGTGGAGGCAATTGAAGGCATCTT TTTTGCCTATAGGAGAAGGGTTGCTAGTGACCAAAATAGATCCAAATAATGTGAAGGATAATGACAATGTTGTTCAAAAA AGGAGGAGCCGTTGGATTGTTCAAGTAGATCATTGTACTGGAGAGGAACACATTTTTAGAGTCACCTCTCCACAGAAGAA AGTGCAGATTGAAGTTTAAGGCCATAAATATTGTGTAGATCTAACTGTATGTTAAGTTTTCAAGGCTTGAGTGTTTTTTC CCTTGTTATCTTTGGATTGTAAAATAGAATAAGAGCAATTTGCAATTTAGTAGTATTACTTTGTGTTTAGTTTATTGTGT GTAAAACATTTGGCCCGTAATTTTTTTGTCACTGGCCAAATTAAGAAGCCTTGAATGTAAATGCTGAAACAAAAGAGAAC TTCAGTGCAGAATATGATTCCAGTTACTAAATGTTGTGAAAATAAGTCCTAATGCGAC
CDS sequence (LotjaGi3g1v0433700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTTGGTCCGCTGAGAAAGCCAAGAGAGCTTATATCCAGGCTCTCAAAATGGCCAAAAAGGGCAAAGAACCTGA TGTAGCTGAGTTCATATCTGCCCTTGCAGCAGGCAATAATGCACAGCTCATGGTGGTGGCCAATGCCGGAGTGGCTGGGC CTGCCACACTGGCGCTGGCTGCAGCCGCACACCAGACCGCTGGCCGTGCGGTGTGTGTTTGTTGCGGGGAGAATGAATTG CAAGCATCAAAAAAGGCTCTGGGAGTTCATAGACATGGTCTTGAGTTTGTTGTGGGAGATGCTAAGTGCCTTCTCCTAGG TGATTACAAAGGAGCTGATTGTGTGCTAGTAGATTGTGACATCACTAGTGCAAAGGAAGTTTTTGTAGCAGCATTGAAAG GGGCTAACAAAGATGGGGCAATTGTGGTTGGGTATAATATTAGGCACAGGGCATCAAGGTGGAGGCAATTGAAGGCATCT TTTTTGCCTATAGGAGAAGGGTTGCTAGTGACCAAAATAGATCCAAATAATGTGAAGGATAATGACAATGTTGTTCAAAA AAGGAGGAGCCGTTGGATTGTTCAAGTAGATCATTGTACTGGAGAGGAACACATTTTTAGAGTCACCTCTCCACAGAAGA AAGTGCAGATTGAAGTTTAA
Protein sequence (LotjaGi3g1v0433700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGWSAEKAKRAYIQALKMAKKGKEPDVAEFISALAAGNNAQLMVVANAGVAGPATLALAAAAHQTAGRAVCVCCGENEL QASKKALGVHRHGLEFVVGDAKCLLLGDYKGADCVLVDCDITSAKEVFVAALKGANKDGAIVVGYNIRHRASRWRQLKAS FLPIGEGLLVTKIDPNNVKDNDNVVQKRRSRWIVQVDHCTGEEHIFRVTSPQKKVQIEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 214 | 214 | 1.2E-115 | – | |
| PANTHER | 1 | 214 | 214 | 1.2E-115 | ||
| Pfam | 4 | 207 | 204 | 2.2E-26 | ||
| Gene3D | 5 | 172 | 168 | 6.6E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0433700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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