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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0433800 |
| Transcript ID | LotjaGi3g1v0433800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1442 family protein; TAIR: AT2G45360.1 ankyrin repeat/KH domain protein (DUF1442); Swiss-Prot: sp|Q5ZYZ0|Y221_LEGPH UPF0753 protein lpg0221; TrEMBL-Plants: tr|V7AMY1|V7AMY1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0433800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84530661..84531246) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGCTGGATGGAACGCCAAGTTCATCGTCGAATGCTGGTCCCATGGCGGCCCCATCGCGGCTAGCCTCGGCCTCGC GGTCGCGGCTCGCAACACAGGTGCAAGGCACGTGTGCATAGTCAAAGACGAGCTGTCGAGATTGCACTACATGAAGGCCC TCGCCGAGATGGGCGTATCTCCGCCGCAGGAGGTGGTAGTCGGAGAGGCAGCAACGGTGGTGGGGAGCCAGAGCCTCGCC GGACTTGACTTTCTGGTGGTGGATTGCACCGGCAGCAACTTCGCTAAGGTTCTGAGGGTGGCGAAGGTGGGCCCCAGAGG GGCAGTTTTGGCATGCAAAAATGCGTGTCAGAGAAACGGTTACAGGTTGTTCCGGTGGAGCTGGGTGCTTGAGAGAGGCA CACGTGTGGTTAGGTCGGTGTTCTTGCCGGTTGGAAAAGGTTTGGATATTGCTTACATAGGGAGTACTGGATCAAGTGGT GCAGCAGCAGCAACAGCTGCAACTGCTTCAAAGGCTCCTAGCCGTTGGATTAAGCACATAGATCAACAATCAGGTGAAGA ACACCTTTTCAGAGAGGGGTAGATGA
CDS sequence (LotjaGi3g1v0433800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTGGATGGAACGCCAAGTTCATCGTCGAATGCTGGTCCCATGGCGGCCCCATCGCGGCTAGCCTCGGCCTCGC GGTCGCGGCTCGCAACACAGGTGCAAGGCACGTGTGCATAGTCAAAGACGAGCTGTCGAGATTGCACTACATGAAGGCCC TCGCCGAGATGGGCGTATCTCCGCCGCAGGAGGTGGTAGTCGGAGAGGCAGCAACGGTGGTGGGGAGCCAGAGCCTCGCC GGACTTGACTTTCTGGTGGTGGATTGCACCGGCAGCAACTTCGCTAAGGTTCTGAGGGTGGCGAAGGTGGGCCCCAGAGG GGCAGTTTTGGCATGCAAAAATGCGTGTCAGAGAAACGGTTACAGGTTGTTCCGGTGGAGCTGGGTGCTTGAGAGAGGCA CACGTGTGGTTAGGTCGGTGTTCTTGCCGGTTGGAAAAGGTTTGGATATTGCTTACATAGGGAGTACTGGATCAAGTGGT GCAGCAGCAGCAACAGCTGCAACTGCTTCAAAGGCTCCTAGCCGTTGGATTAAGCACATAGATCAACAATCAGGTGAAGA ACACCTTTTCAGAGAGGGGTAG
Protein sequence (LotjaGi3g1v0433800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAGWNAKFIVECWSHGGPIAASLGLAVAARNTGARHVCIVKDELSRLHYMKALAEMGVSPPQEVVVGEAATVVGSQSLA GLDFLVVDCTGSNFAKVLRVAKVGPRGAVLACKNACQRNGYRLFRWSWVLERGTRVVRSVFLPVGKGLDIAYIGSTGSSG AAAATAATASKAPSRWIKHIDQQSGEEHLFREG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 192 | 192 | 5.6E-71 | – | |
| Gene3D | 1 | 153 | 153 | 5.6E-8 | – | |
| Pfam | 1 | 191 | 191 | 3.7E-64 | ||
| PANTHER | 1 | 192 | 192 | 5.6E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0433800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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