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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0438000 |
| Transcript ID | LotjaGi3g1v0438000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger, B-box; TAIR: AT4G27310.1 B-box type zinc finger family protein; Swiss-Prot: sp|Q9LRM4|MIP1B_ARATH B-box domain protein 31; TrEMBL-Plants: tr|A0A151SVD4|A0A151SVD4_CAJCA Putative zinc finger protein CONSTANS-LIKE 11; Found in the gene: LotjaGi3g1v0438000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85112689..85114743) extracted from Lotus japonicus Gifu genome v1.2.
GGCCATTACAATTGCAAAGAGCATGCCAATTTATTTTCTTATAAAAAGAATCTATAGATAACTTTCATTTTTTGATCAAC TATAGATAACTTTCACATTCATGTTTATTATATAAATATCAGCCATTCTACATTCTCTTTCCTTCTCTTTTCTTCCTTTC GTCCATCCTTTACCAGCTCAAGAGAGAGAAACTACAGAGAGAGAAAATCCCGGACACACAAAACATCAAACACAGAAACT GCGGAGAACACAGAAGAAAACCACAAGACTCTGATGAAGAACTGCGAGCTCTGCAAGGTTCCGGCGAGGACCTTCTGCGA GTCAGATCAGGCAAGCCTATGTTGGGAGTGCGACACCAAAGTTCACGGTGCCAACTTCTTGGTAGCCAGGCACACAAGGA CCCTTCTCTGCCACGCTTGCCAGGCGCCTACGCCCTGGAAGGCTTCCGGCGCTAGGCTTGGCAACACTCTCTCCTTGTGC GACGCCTGCGCCGGCGGAACCAAGTTCGTCGCCGATCAAGGTGAAGAAGAGAGTGAAGCAGGCAATGACGATGATATATA CACCGACGACGATGAGGATGATGATGAGGACGGCGATGAGGATGATGACGACGTTGGCGGCGATGAAGACGGTGATAACC AGGTTGTCCCTTGGTCCTCCACCGCGCCGCCACCGTCGGCTTCTAGTTCATCCAGCAGCGAAGAGTCGGTTAGCCGGTGC GATAACGGCGATGAGGGTGTTTCTTTGAAACGACGTCGTGAGGATCATGATTTTCAGGTATTATTATTAATTTATTGTTA CTATTTTTAATTTTTCTCTCTGAATATGTTTTCCAAAAATGAAAGCATTTTTCTTTTAATTTTATTTAATTTATTGGGAT TTTTTCGTGAGAGATTTTTTTTTGTTTCAGAATTCGAACCACGGGGCATATCAACGGAGGCGCGGTGCAAAGTGGGGAGG AGAGGAGGTGGATTGGTTAGGATGCGGCGTGGAACCGCCGTTGAAGGTGTTGAAGCTGCGGCCATTGAGCGGCGGAGAGA CGAGACCACCGTCGTCGCCTTAGTAATGGTAGAGCCGCTGAAGGCGTTAGATCTGGAGAGACACGGAGCATCTAAGCCAC ACGATTGATTAGATATTTTTATTGTTAATTATTATTAAGCTCTTGGGTTAACTTTATTCTAACAAGACACCACCACCACT AGTTTTTTTAAAAATGACTGTCAAATGTATGAAATATGAATCAGTTTTTTATAGTATTATATCTTGATTTTTTGTGTTGA CATTTTGAGGATATTGAAGATTGTGGGGTGATGTAGTTTTTTATTTTATTTTTCTTCCCATTGCAAGTTAATACTTATTT CACATTTATAATTATTTATTTAAGGGTGAATTTTATGTTTTGAATAGAAAGGAAAAATTACGAAATGAATGTGATCCCTG GTATCATCATGTTTTGTTTTCCTGAAGTCAATTGATTAGGTGATAAATTTTGACTAAGAACGAATATATTAGGCAGGAAA GGTGCACACAACATTAAAAATTAGGCAGAAATTATTGACACCCTGAATTTATTAAACATGTTTTCAAAGTGCATCAAGCA AATTAAAGCTAACTTTTTGTTTAATCGGTTGAAGACTATGCTTGAATTGGATCAAAATGGCATTTGATTTTAGACCATGG AAATGGAAGAGTAAACCGTGTCAAAAAAGGGCATGGTGAGTAGTTAGGGATTGAATAGAGACACAGTACAGAAGAACTTG TGGTTGTGAATAGAAACAGTTGTGCTGGTCATGACCTATCAACACCGAATGAATAAAGAAAGAAAGGAATGAATGGAAAC CTCCCAATCCAAATTTACCTTCCACGTTTGGAGTGCCACGTTCCTGAAATTGCACTGGCTTACTGTTACTTGGTCTTGTA TAATATCTGTCTTCAGTCACCAACTGAAATTCGTACAAGGTCAATATCGTAACTGCACTGCTCGTGCCAAACCACATATA ACTAACTATGTTGAAGGCAAGAAAAATTATATCCCACACATAATATTTATAGAAG
CDS sequence (LotjaGi3g1v0438000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACTGCGAGCTCTGCAAGGTTCCGGCGAGGACCTTCTGCGAGTCAGATCAGGCAAGCCTATGTTGGGAGTGCGA CACCAAAGTTCACGGTGCCAACTTCTTGGTAGCCAGGCACACAAGGACCCTTCTCTGCCACGCTTGCCAGGCGCCTACGC CCTGGAAGGCTTCCGGCGCTAGGCTTGGCAACACTCTCTCCTTGTGCGACGCCTGCGCCGGCGGAACCAAGTTCGTCGCC GATCAAGGTGAAGAAGAGAGTGAAGCAGGCAATGACGATGATATATACACCGACGACGATGAGGATGATGATGAGGACGG CGATGAGGATGATGACGACGTTGGCGGCGATGAAGACGGTGATAACCAGGTTGTCCCTTGGTCCTCCACCGCGCCGCCAC CGTCGGCTTCTAGTTCATCCAGCAGCGAAGAGTCGGTTAGCCGGTGCGATAACGGCGATGAGGGTGTTTCTTTGAAACGA CGTCGTGAGGATCATGATTTTCAGAATTCGAACCACGGGGCATATCAACGGAGGCGCGGTGCAAAGTGGGGAGGAGAGGA GGTGGATTGGTTAGGATGCGGCGTGGAACCGCCGTTGAAGGTGTTGAAGCTGCGGCCATTGAGCGGCGGAGAGACGAGAC CACCGTCGTCGCCTTAG
Protein sequence (LotjaGi3g1v0438000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNCELCKVPARTFCESDQASLCWECDTKVHGANFLVARHTRTLLCHACQAPTPWKASGARLGNTLSLCDACAGGTKFVA DQGEEESEAGNDDDIYTDDDEDDDEDGDEDDDDVGGDEDGDNQVVPWSSTAPPPSASSSSSSEESVSRCDNGDEGVSLKR RREDHDFQNSNHGAYQRRRGAKWGGEEVDWLGCGVEPPLKVLKLRPLSGGETRPPSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 170 | 170 | 3.3E-66 | – | |
| PANTHER | 1 | 170 | 170 | 3.3E-66 | – | |
| SMART | 1 | 45 | 45 | 4.1E-7 | ||
| ProSiteProfiles | 1 | 45 | 45 | 8.83 | ||
| Pfam | 2 | 43 | 42 | 2.9E-7 | ||
| CDD | 4 | 45 | 42 | 1.6723E-5 | ||
| MobiDBLite | 80 | 182 | 103 | - | – | |
| MobiDBLite | 85 | 119 | 35 | - | – | |
| MobiDBLite | 123 | 146 | 24 | - | – | |
| MobiDBLite | 147 | 172 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0438000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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