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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0438500 |
| Transcript ID | LotjaGi3g1v0438500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT4G03270.1 Cyclin D6;1; Swiss-Prot: sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1; TrEMBL-Plants: tr|I1M3Y8|I1M3Y8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0438500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85158937..85161824) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAGTCAAAAACACAAATAAAAAGAGAGTGTAGCAAGCAACTAGTAACAAAGCAAAGCTAAAAAGAACTGAAGCTCCT CCATAGCTTTCATCTGAAGAAAGCAGAAAACTCTCTCAACACCTTTACCAAATCACATTCATACACTCTCTCTCTCTCTT TCTCTCCATTTAACAATGCTTGTTCTTCTTGCTCAGCATCACAGCCATCACTAGAAAGAACTCAACAAAGACTCATCCAT GGAGCTTGACCTTCAAAACCCTCTAGAGAACTTCCATGACCTTCCCTCTGACGCTGTCTCTTCTCTTTTCCACGCTGAAT CTGACCACACACCATCACCAAATTACTTCCACTCTCTCAAAGCCAGCGACTTTGACATCTCTGTTAGAAGAAATGTCATC TCATTGATCTCACAGGTAACACAAATTAAGACTAATCTTAATTAACTATTGTTGTTTGAAATGAAAACAGAACATTTCTG AATGTTGGTTGGTTGATTCTGTACTGTATAGTTGTCCTGCACCTTCGATCCATTTCTGTGCTATCTTGCTATCAACTATC TGGATCGCTTCCTCGCTGACCAAGGAACATTGGTAATGAACCAAACACCTTAAACTTTATCTTGAAGAAGATTAAACAAG ATTGAATCTTTCAATTAGATTAAGCTCCCTTAAGATCTAACTCAAATTGGGTCTCTATGAAACAGCAACCAAAGCCATGG GCCAATAAGCTTCTTGCAATCTCTTGCTTCTCTGTAGCAGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTCCA AGTAAAGTGTTTTGACTTCTAAGTGCATGTTTGGTTATTAGTTCAAAACAACATTTAGTCCCTCGTTAATAAATCGAGAT CACGATTTTTAATGCACATTCACACAACGAAATGCACTTGTTCGAGCAAATGGGAATCCAAACCTAGCCTTAATATGCTT GAAAACAGAGTACTCTGCCACTGAGATTGTTATTTGATTACTAGGTTCTTCTGAATCATGATGATGGCGGCGTCATTTTT GGGGCACAAACAATACAAAGAATGGAAGCTCTTGTTCTAGGTGCTCTACAGTGGCGAATGCGTTCCATCACCCCTTTCTC TTTCCTCCCTTTCTTCAGCAATTTGTTGAACCTCGATGATGACCCTGCATTGAGAAAGGTTCTGAAAGATCGAGCATCTC AAACAATATTAAAGTCACAAAGAGGTATAATTAATGCTCGGTTGACTCAAATACTGTAAATTGATTTGATTGCTGATCTA GAATTACTGTTCAATAATCTTTGTCTCTTATTTATTTATTGATTGGTTTTCAGAGATAAAGGTTCTGGAATTCAAGCCAT CAATTGTTGCTGCTTCATGTCTTCTCCATGCTTCACATGAGTTGTTTCCCTTTCAATATCCATGCTTCTTAAGAGCTATA TCCGATTGTTCATATGTAAATAAGGTACATACTACATGCACTCTCTCATTTTCTTGTTATTGTTAATTTGTTATTAAATG GATAATAGATGGTACGAACATTTTACTGCAGGAAAGTGTGGTGCAGTGCTATAATGTAATACAAGGCATAGCTAGGGAAG AGTACGAATCTGCTGCGTTCAATATTGTAAATTCAAGTTCAGAAACACCGGTCAATGTGTTAGATGAACATTTTCTGAGC TTGGAAAGTGAGAAAACCAATGTTGCTTCTTCTACTACTCTGATACAACAAGAGAAGAAGGACAATATCAAAAGAAGGAA GCTCACCAAATATGGTAACGATGTCCAGTTTTCTCATTTTCGTCAATGCTGAAGTGCCGAAACAGAAGAGGATATAGCAT TTAATGATCCTCCGGGTCCATCAGGTAGAGGCTAATGCCTTTGGTGATATCATAATGTTGTAGTTAACCAAGAAAAATAA TGGAGCACATGATCAAAATAGGAAGGGATAGTGATGGATTTGGAGAGAAATGAAGGAAATTCAATCCATAGTTAGTGGAC AAAATCACTGTAACGTGACCCCGGTACGGCTTTCATTAAATCAGCTGATTGTGAAAAGGAGCAAGGAAGATAAGATTGGA TTTGGACAAAACGTAACTATGAATTGTAACTTTGAGTTTTATGTGTCTGTTTTGTATTCATGTGTGGTTCTGTCTCTTAG CTTCTGGCAAAAGAATAATATAGTAATAGTAATAGTGGAGCAACAAATTTTCTTTTTTAAGTTGTTGAGACCATAGTATA TATTTATCACACATAACAGTGATTAATTCCCTCGTTGTAGATGTTTACACTAAGTGATAATGGGTAATAAATAGTACTTT AACATATGGCAATTAAACTCTCCCACATATTAATTTTGTTGGTGTGTTCAGGTCAGCGCAAAGCAAGGATAACGAAATCT GGGTACAGGTACAGGTTATAAGGCATGTACATAATTTTCTACTACTAGAGATAGTTATGCATATTTATTTGTCTCCAAGA TTCGCTATAAATAGAGGCAAAAGCTAACTGTGAATCTAAGAAGGTTGTCTCCAATCTAGGTGTGTGAGTTTGCCATGTTC TTTCTTTTTTAACCTTCTTTTCATCCATGTGTCAACTTGTTAATTTTATTTCTGCAAGTGATTAGTCACTAGCTACAAAT TGGTGTGTTTGATTTGGGAGAATTAGGTGAAGGGGGTTATATTTTAATGGATATATCATATATATCATATATGTGAAGCG TTGAAAGGCCCCAATGTCTCAAATTTCTTTATCAAAGATATTTGATTGGACCCAATTTTGAGATCTCTGTTCTTGTACCT GTGAGATGATTGCTACTCCACAGAAGGAATTGGGACCACTGTGCTGGGTTGGTTCTTAGAAAAACAAAATGAAAACCTAT TTCTAAAG
CDS sequence (LotjaGi3g1v0438500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTGACCTTCAAAACCCTCTAGAGAACTTCCATGACCTTCCCTCTGACGCTGTCTCTTCTCTTTTCCACGCTGA ATCTGACCACACACCATCACCAAATTACTTCCACTCTCTCAAAGCCAGCGACTTTGACATCTCTGTTAGAAGAAATGTCA TCTCATTGATCTCACAGTTGTCCTGCACCTTCGATCCATTTCTGTGCTATCTTGCTATCAACTATCTGGATCGCTTCCTC GCTGACCAAGGAACATTGCAACCAAAGCCATGGGCCAATAAGCTTCTTGCAATCTCTTGCTTCTCTGTAGCAGCCAAGAT GTTGAAAACAGAGTACTCTGCCACTGATGTCCAAGTTCTTCTGAATCATGATGATGGCGGCGTCATTTTTGGGGCACAAA CAATACAAAGAATGGAAGCTCTTGTTCTAGGTGCTCTACAGTGGCGAATGCGTTCCATCACCCCTTTCTCTTTCCTCCCT TTCTTCAGCAATTTGTTGAACCTCGATGATGACCCTGCATTGAGAAAGGTTCTGAAAGATCGAGCATCTCAAACAATATT AAAGTCACAAAGAGAGATAAAGGTTCTGGAATTCAAGCCATCAATTGTTGCTGCTTCATGTCTTCTCCATGCTTCACATG AGTTGTTTCCCTTTCAATATCCATGCTTCTTAAGAGCTATATCCGATTGTTCATATGTAAATAAGGAAAGTGTGGTGCAG TGCTATAATGTAATACAAGGCATAGCTAGGGAAGAGTACGAATCTGCTGCGTTCAATATTGTAAATTCAAGTTCAGAAAC ACCGGTCAATGTGTTAGATGAACATTTTCTGAGCTTGGAAAGTGAGAAAACCAATGTTGCTTCTTCTACTACTCTGATAC AACAAGAGAAGAAGGACAATATCAAAAGAAGGAAGCTCACCAAATATGGTAACGATGTCCAGTTTTCTCATTTTCGTCAA TGCTGA
Protein sequence (LotjaGi3g1v0438500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELDLQNPLENFHDLPSDAVSSLFHAESDHTPSPNYFHSLKASDFDISVRRNVISLISQLSCTFDPFLCYLAINYLDRFL ADQGTLQPKPWANKLLAISCFSVAAKMLKTEYSATDVQVLLNHDDGGVIFGAQTIQRMEALVLGALQWRMRSITPFSFLP FFSNLLNLDDDPALRKVLKDRASQTILKSQREIKVLEFKPSIVAASCLLHASHELFPFQYPCFLRAISDCSYVNKESVVQ CYNVIQGIAREEYESAAFNIVNSSSETPVNVLDEHFLSLESEKTNVASSTTLIQQEKKDNIKRRKLTKYGNDVQFSHFRQ C
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 282 | 281 | 1.6E-105 | ||
| PANTHER | 2 | 282 | 281 | 1.6E-105 | ||
| SUPERFAMILY | 12 | 150 | 139 | 1.29E-20 | ||
| Pfam | 20 | 150 | 131 | 2.9E-16 | ||
| Gene3D | 21 | 243 | 223 | 1.2E-36 | – | |
| Gene3D | 33 | 151 | 119 | 1.2E-36 | – | |
| CDD | 70 | 143 | 74 | 3.36564E-7 | ||
| SUPERFAMILY | 135 | 278 | 144 | 6.98E-9 | ||
| CDD | 153 | 245 | 93 | 0.00491246 | ||
| Pfam | 153 | 252 | 100 | 2.3E-11 | ||
| SMART | 153 | 279 | 127 | 0.0019 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of LotjaGi3g1v0438500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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