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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0441900 |
| Transcript ID | LotjaGi3g1v0441900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT1G61170.1 hypothetical protein; Swiss-Prot: sp|Q97QP7|IGA1A_STRPN Immunoglobulin A1 protease; TrEMBL-Plants: tr|A0A072VAM7|A0A072VAM7_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0441900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85450019..85451581) extracted from Lotus japonicus Gifu genome v1.2.
GTCCAACATGTTTCTTGCTTGGTCAATCAATTAAGCTCACTCTGTCTACAATTATATTCACTCTCTCTGGATTGCCCCTT TCTAACACTTAACCTCACCATTCTCCCCTCTAGGCTCTAGCTCATTTTCACAACCTTTTTTCTGACTTCCCATTTCCCAA CTCAGCCAACATTTCAAAAACCTTTTTTCTTTTTATGTTTCTCTTATCATCAACACTTTCAAAACAAACCAAGCTGAAGC CATGCAATACCATTCTTCCAATTAGCCACCACACAATTACTTGGTTCAAACCAAATGGGTTGCTGCTTGTGCACCCCTAA GCAACACCAAAATGTCCTAAAATACCAGCAAACCCAGCTCAGATCCCATGCACCCAAGTCTCCCAATGCTACCCACCAAT CAGAATGCAGAGTCCCACCACCACCTGCTGAAGAATCTGTGAAGGAGGTACTCTTGGAAACACCCATTTCCAAGCCCCAA GTTCCAATTTTGACGCCAGAATCAAAGACCCAATTGCCAGTTGTGCTACACAGCAAGGATCCCATCGATGAAAAAGCAGC ATTTCTGGAAGAGGCCTCCGATGATTGTTCTCCCATTTCGGGAACATGCAGCGTCGGCGAGAGCTTCTCCACCACCACCA CAACCACCGTGACGGTGACAGAGTCGAGAGAAGACGAAGTTACGAGTAAGCGAGGCACCAGAGGGGAAACTCGGTACCGG AATCGACCACACAACGATGCGCCCCGGAGGCGTTCTCACGCCGTCATTGGAAATGGAATCGGCGGGAGAGAGAGAAGGCC AAATTCTCCGGCGAGAGTGACAGAGCCTCCGCCGGCGAAGAAGGTTCTGATGGGTTCAGGTTCAGTTCGTCGGAGGGAAT CCGGCCAGGTCCGCCGTGATCCCGGAGAGGATTCCGGAAGGCGGCCAGGGTCACCGTCGTTTACAAGGACGGTTGGCGCC GGCACAAGTCGGAGACAGCTCAGGCCGCCGGGAGGAGCTGGTCGGCGGTTGTTGCCAATGGAGAACGGTGAGGTTGTTGG GGAGAAAAACGGCGGCGTTTTAATGGAGGAATCACTTGAGAATCCGCATGTTTCTTTGGAGTGCTTCATTTTTCTGTAGA TTTAGCACTGAAAGCTATTTTCACATTGATGTGTGTTTTTGTATCATAGTAGCACTGGCTTGTTGTATGTTTGTGGTTGA ATTTGATCAATGTATGTTATAAACATGCCTAATTCTTCTTCAGTTCTTCTTATGTACATATTTCCAGGAATGTTTCTAAA AGAAAGGACTGATAATTTGGCAGCATTGGGCCCAAAGGAAAACACAAATATTCCAAGCCCAAAAGAATTACCAAATCACC AGCTTGGTTAAAGGGATTTGATCAGACCAGTGGAAGGAACAAGAAGAAACGGAAATGAGTAGGAAAGTTTGGCAATATAT TAGGAGTACTATTATATATATATTAAATAGTCTCATATTATTAGTTATTGGGCCAGTAGATTTGGGCCTTAGTAAGTACA AGAAGAGACAAGTAGTATAAATATGTAATTTCTATTTCCAGTC
CDS sequence (LotjaGi3g1v0441900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGCTGCTTGTGCACCCCTAAGCAACACCAAAATGTCCTAAAATACCAGCAAACCCAGCTCAGATCCCATGCACC CAAGTCTCCCAATGCTACCCACCAATCAGAATGCAGAGTCCCACCACCACCTGCTGAAGAATCTGTGAAGGAGGTACTCT TGGAAACACCCATTTCCAAGCCCCAAGTTCCAATTTTGACGCCAGAATCAAAGACCCAATTGCCAGTTGTGCTACACAGC AAGGATCCCATCGATGAAAAAGCAGCATTTCTGGAAGAGGCCTCCGATGATTGTTCTCCCATTTCGGGAACATGCAGCGT CGGCGAGAGCTTCTCCACCACCACCACAACCACCGTGACGGTGACAGAGTCGAGAGAAGACGAAGTTACGAGTAAGCGAG GCACCAGAGGGGAAACTCGGTACCGGAATCGACCACACAACGATGCGCCCCGGAGGCGTTCTCACGCCGTCATTGGAAAT GGAATCGGCGGGAGAGAGAGAAGGCCAAATTCTCCGGCGAGAGTGACAGAGCCTCCGCCGGCGAAGAAGGTTCTGATGGG TTCAGGTTCAGTTCGTCGGAGGGAATCCGGCCAGGTCCGCCGTGATCCCGGAGAGGATTCCGGAAGGCGGCCAGGGTCAC CGTCGTTTACAAGGACGGTTGGCGCCGGCACAAGTCGGAGACAGCTCAGGCCGCCGGGAGGAGCTGGTCGGCGGTTGTTG CCAATGGAGAACGGTGAGGTTGTTGGGGAGAAAAACGGCGGCGTTTTAATGGAGGAATCACTTGAGAATCCGCATGTTTC TTTGGAGTGCTTCATTTTTCTGTAG
Protein sequence (LotjaGi3g1v0441900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCCLCTPKQHQNVLKYQQTQLRSHAPKSPNATHQSECRVPPPPAEESVKEVLLETPISKPQVPILTPESKTQLPVVLHS KDPIDEKAAFLEEASDDCSPISGTCSVGESFSTTTTTTVTVTESREDEVTSKRGTRGETRYRNRPHNDAPRRRSHAVIGN GIGGRERRPNSPARVTEPPPAKKVLMGSGSVRRRESGQVRRDPGEDSGRRPGSPSFTRTVGAGTSRRQLRPPGGAGRRLL PMENGEVVGEKNGGVLMEESLENPHVSLECFIFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 8.0E-51 | – | |
| PANTHER | 1 | 274 | 274 | 8.0E-51 | – | |
| MobiDBLite | 20 | 45 | 26 | - | – | |
| MobiDBLite | 20 | 36 | 17 | - | – | |
| MobiDBLite | 113 | 240 | 128 | - | – | |
| MobiDBLite | 125 | 153 | 29 | - | – | |
| MobiDBLite | 194 | 208 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0441900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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