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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0445500 |
| Transcript ID | LotjaGi3g1v0445500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit tim16; TAIR: AT3G59280.1 Protein Transporter, Pam16; Swiss-Prot: sp|Q93VV9|TM16B_ARATH Mitochondrial import inner membrane translocase subunit PAM16 like 2; TrEMBL-Plants: tr|I1MP46|I1MP46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0445500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85876057..85879889) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTACACAGCACACGCCTTGGGACACACGCCTTGTCTCTCTGATCACTTTGGATTGGATTACCCCTTCTCCAAGTTCA ACAAAAGGGTTTTGACCTTCGAGGTGAATGACCAACCAATTCACCGCCCTTTCGCCACCGTGAAACCCTAGTTGGTGTTT GATCATCTGCAATTAAGCTACCTTTCAATACACTCCACCCATAATTTTGATCTTGCTCTTTGATTCCACTCAGCTTCAAT TTGTTGATTCTCAAAAGCTATGGTACCTTCACATGATTGTCCCTCTTTTTTTTTGTTCCAATTTTGTTTTCTGCTTTTTT AAGGGGAAATAGATAAATTAATACATGGGTATTATTTGTTTTTTAGCTTCTGTGCTTAAAGGAACTTAAAAATTATACCT TTTTGTTGTTTTCTTCATCATCCTTGAAGTGGGCACTTTACAGGTTTGTGGTTTTACAAAGGGTTTTGGCAAACCTACAT TTTATCCTAGAGGGAAAACCTGTTACCGGGATTTATGTTGTGAATGTTATAGCCAAGCTTGTTAATAGTGTGCCGCAATA GTGCGATAGCACCTTGGGGGTTCACAGCTACTCCACTATTCACCGCTATTGTCCGCTATAGCGCTCAAAATAACTTTTTT TTGGGCTTGCCGCTAGGCTACGCTATCCGCCATTAACAACCCTGGTTATAGCCTGTGCTTCTTCGCATCATGACCCATTT TGTGTAATTATGCTGTGATTAACATTTGGTCATATCTCAGTTTGTTGGGTGTGTAGTTTTTTTTTTGCAACTGAAAGGGC TAAAAGCCCATTAAGAAACAAATGAAGACATAACATATTAGTTACTTTTTGAGGTATGTGATAGAAGGAAAATACAAAAT TAAGGAGAAAAGTATTGATTGAGGATTTTTAGAAATCTGCTATGGGAAGTGATTGTTGTCTAATTAATTTTTGGAATGTT TCCTATTTCTAAATAAATTTTAACTTAACTTTTATGCAGGCTACAAGGATTCTTGCTAACTTGATTGTTATGGGTGGGGG AATGTTCGCTAAAGCAGTTGTTAAGGCATATCATGAAGCACTTGCTAGTAAGCTTTCCAAATTTGTGACTGGATGTATTT GCGATTTGTGCTGCAAAATATACATACTAATCTATTATTCAATTATATGAGACTGCTAGGTGTTCAGATTAATTATTGTT TGCTACTTTACTTCCTTGGATACTTAGTTATATACTTATGCAGATGCTGCTTCCCCAGTCCAAAATCATTGTCACATAAT TTCTAGTTATTCAATTGTTACACTGTTTTAAGAATTTAGTAGCTAAGTTAGGTGTATAAAGATTTTGGGGAGTTGTAGTT TTTTATTTCTGCCAACAGTTAGTGTGGGATTTGATAGGCTACCTGGGGGAATGGGGCAATTAAGTTGAGAACTTTGAATC ATTGCATGGGATGAGCCCCGAATGAAATTTTGGTCGTGACTGGTTTGCATCTCTTTGATATGTGGAACCCTGCCTTGTGT CCAAACTCCAAACTGTTGAATAGAATCCTAGTTTTGTGGAGCTGGCTAAGTAGCATATTGCGAGAAGAGCTCAGGAGAGT GGTTGCATGGTTCGTGTTCAATCTTTAGATAAATTTTTAGACCAAAAGGTCCCTTTAAGACTTAATAAATGTGAAGTTCT CTAGGAAGTAGATATGTTGGATTGATTTTCTTGTGAGCATTGTATCTATGTGCACATACAGGCTGAAAATATTTTAAAAT GAATTTTATTGGATTCTTTAAAAGGAGGTTAGTTGTTTAAGTGGAGAAGTCCAGGAAAAATCAAACTAAGGAGATTCTAG TTCCAAATAGTTCCACAAAATTGCAAGCAGTAAACCTGTGAAAGTAATAAAAGTGTGAGCAAGAGTTATATTGGAAGGTG GTGGGTTGGATAGAGACCCTAGTTTCAATGAAGAGAAAGTTACTAGATTCTGCAAGGAGCTTTGTTCATAGGGTTCATTG CTATGTGAGAAGGACCACTATGTTAATTAGGAAGTTCGTTGCAAGTCAAGGATATTGCTTCAGTGGGATACATAATTATG ATTTCCTTTTAAACACATTCCTTAAGCACAAGGTAATTACCAGTGTTTATGTTGCTCACCAGAATAGGTGGATGTGAAAA GCACCATTAATGGTTCTCATGCAGTCATGCATCTTTGGTAATTTATCTCTTAAAGATATCCTTTTTGGCCGCGCTAACTC GAATTTTCGGAGAACCACATTGATTGGGGTTTCTTCCTTATCTGATTCTTTCTGTCTGCATCAACTTTTACCTTTGCATC AGAACTTTTTTTTTTCTTAATTCCAGGGTTCAGATGTTTTCTAAAATTTTCATTTTAAATTGTTTTAAAAGCCACTCATG TTAATGGAATTTCATAATAGAAAGGCTCCTGACTTGGTACGTTATAATCTTACAGAGCAATATTGATTCCTTTTTTTCCC TGTTTCAAAAGTTGGATGTTTCAAATTTAGATATAACAATATTTCCAAGCCTTTACCTGAAAGCTTAGTTTTAGAAGAGT TGGTCCTTTTGCTGAGCAATCCTTATATTAATTTTCTTTAGGGTGTCATCCTCCTCATCTTTACTGAGTAGCTGATGATT TAGCATTGCTTTTTGAACAACCTATGTCTCAAAACATCAAGATGACATTTGATACACTGGAAAATATACTGAAATAGCTC CTCCATGTTGTCCATGCCATATTTCTCTACTCTTGATATACTGAATTTGTTTTAGGTCGCTATTCTTTCTTTTGCCATGC CTCATCCAATCTGTGTGCGTGTAGTGACTCTTACAAGTTAAAACTTCTCACTTTCTGAACATTATGTTGTTCCAGAGGCC TTACAAAATGGTGTTGCCCAAGAGACATTACAAAATACTGTCCGCGGAGCTAGAAAAATGATGACAGAGCAAGAGGCTCG GCAGATTCTTGGTGTTACTGAGGGAACTCCCTGGGGGGAGATTCTCCAGGTTAGTATATCATCTGTGCTGTGGTTCTTGC CATTCTCCATATGTTGTTTTAATAATTGCGTAAACCATTTTTTGGGCAGAAATATGACAATTTGTTTGAGAAAAATTCCG AAAAAGGGAGTTTTTACCTCCAGTCTAAAGTTCACCGGGCTAAGGAATGTCTGGAGGCTGTCCATCGCTGATCTGATTTG GGAAAATCCTAATTGAATTATTAATGAATCATTGTAGTGAATCGAATCTCTGGAATATTCTTATTATTGATGAATTCTTA TAGTGTGACTGACTTTTTTATTTTCTTTCATTTCTATTTAATTTTAAGTTCCTACCCGCCGATAAGTTTTAGTATAAGTG TTCGCAATGCCAGATTTTGGGCGTGAATGCTCGCTGTCGAAAATTTTGAGCTTGAGGCAAGATTCAGGGTACCCTCAATT GAGAATTAGTTTTGCTCCATCTTACTGCCCTTCTGTAATCTTTTTTGCCACCTAATTGTATGCTATTTGTTCACTCAAAA GTTTCTGAAACTAAACTTAGTTGGGAATTGATGGCAAATGATGAAGAACTGAAGCTATTGTTGGAACATTTTGTCATGCA TTTTGTCAAAAACAACTGATTGTCGAAGCAGATGCCGTGGCATCTGATTTCGTGAAGCTAGGACATCAGTCCTTTGCTGA AGTTTAATTTTGTGGGCCCTCTGAAGATTTGCTGAAGATATGTTTTTGAGTTACTTGAGGAGCAAGTAGCTATTTCAGAA GGGTTTTAATTATTGGGTTGTTATTTGTTGAAACAATCTTTGATAAAAGATTTGTTTCTATCTTTACTTGGGA
CDS sequence (LotjaGi3g1v0445500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACAAGGATTCTTGCTAACTTGATTGTTATGGGTGGGGGAATGTTCGCTAAAGCAGTTGTTAAGGCATATCATGA AGCACTTGCTAAGGCCTTACAAAATGGTGTTGCCCAAGAGACATTACAAAATACTGTCCGCGGAGCTAGAAAAATGATGA CAGAGCAAGAGGCTCGGCAGATTCTTGGTGTTACTGAGGGAACTCCCTGGGGGGAGATTCTCCAGAAATATGACAATTTG TTTGAGAAAAATTCCGAAAAAGGGAGTTTTTACCTCCAGTCTAAAGTTCACCGGGCTAAGGAATGTCTGGAGGCTGTCCA TCGCTGA
Protein sequence (LotjaGi3g1v0445500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATRILANLIVMGGGMFAKAVVKAYHEALAKALQNGVAQETLQNTVRGARKMMTEQEARQILGVTEGTPWGEILQKYDNL FEKNSEKGSFYLQSKVHRAKECLEAVHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 104 | 104 | 9.7E-18 | – | |
| PANTHER | 1 | 108 | 108 | 4.9E-52 | – | |
| PANTHER | 1 | 108 | 108 | 4.9E-52 | ||
| Gene3D | 53 | 108 | 56 | 1.5E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TIM23 mitochondrial import inner membrane translocase complex | The protein transport machinery of the mitochondrial inner membrane that typically transports proteins that possess a matrix-targeting N-terminal presequence. The TIM23 complex contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor. | ||
| Biological process | Protein import into mitochondrial matrix | The import of proteins across the outer and inner mitochondrial membranes into the matrix. Unfolded proteins enter the mitochondrial matrix with a chaperone protein; the information required to target the precursor protein from the cytosol to the mitochondrial matrix is contained within its N-terminal matrix-targeting sequence. Translocation of precursors to the matrix occurs at the rare sites where the outer and inner membranes are close together. |
Expression pattern of LotjaGi3g1v0445500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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