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LotjaGi3g1v0455200.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0455200
Transcript ID	LotjaGi3g1v0455200.1
Lotus japonicus genome version	Gifu v1.2
Description	Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp\|P0C2F6\|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr\|I3S2I6\|I3S2I6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0455200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:86849634..86850692) extracted from Lotus japonicus Gifu genome v1.2.

GTGAGAATGACATGTCACTAAATCAGTCTGATAGAAGTTATTCTTTTCTAATATATATTGATTGATATTGATTGATTTTG TTCACAGGCTAATTCTCCCAGCTAAAGAAAATAGTATAAAAAATAATATGATGGTACGGTTTGTGAAAGAGGAATAATGA GAAGAGAATAGACCAAAACTGATATGAAATTTCAACATAAAAAATTAAATAATTATTCTTTCATACCTCAAAAATGAGGT AAAAAGAGGTGGAAGAAGAGAGAAATAGAAAGAAAAGAAAAAGTAAGAGAGAGAAAGTATAAGATGTGATATATGATAAG ATAAGAGAGATAAAAATAAAAATAAGTGGAAATGAAGTGAAAAAAAAAAATGAGGTGTGAGTATATCATTATCATCTTGC TAATATTATGTGACATCGACTGGTGATTAGGAAAAAAATAAGTCACAGAGCTATTCAATTTTTTTGTATGGGGCAGCCGC CTCAACAAGGAATGGTGAAGTTAAGCTTTCGTGACCAGATTCAAGGCATGGGAGCTGGTGGCCTGGTGCGGGACAGCATG GGCAAATGGATCGTTGGCTTTTATGCTCACCGAAGTGGAGGTAATGCGCTGGTGGCAGAGGCTCATGGTCTGCTGCTGTG CTTGGAGCTATTATGGGTTCGTGGTCATAGGAATGCTGTAGTGGAGGTGGATTGCGAGGACCGTTTGACAGCGTTGGATG ATGAGGAAAGTTGCAGATTTCTTCCTATCTTGAACATGATCAAGAGCATGCGAGCTAGGAGTTGGAATATTGTCTTGACC AGAATCCGGAGGGAGTGTAATGCTCTAGCGGATTTCCTTGCGAAATGGGGAGCAAGTGCTTCGTTAGTGGACATTTGTAT TGTGGAAGATCCTCCCTGGGATGTAGAGACCCTTGTTATGAGGGATTTAGTTTTAGCTCCTTAGTTCTTCTTGTTTGTTA GTTTTCAGATGCAACAAACAATATTTTTTTGTACAACTTATGACCGAATAAAAACATATTTAAGCATTGAATTCTTTTAT CAAATGCTATAGCTCCAAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0455200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGCAGCCGCCTCAACAAGGAATGGTGAAGTTAAGCTTTCGTGACCAGATTCAAGGCATGGGAGCTGGTGGCCTGGT GCGGGACAGCATGGGCAAATGGATCGTTGGCTTTTATGCTCACCGAAGTGGAGGTAATGCGCTGGTGGCAGAGGCTCATG GTCTGCTGCTGTGCTTGGAGCTATTATGGGTTCGTGGTCATAGGAATGCTGTAGTGGAGGTGGATTGCGAGGACCGTTTG ACAGCGTTGGATGATGAGGAAAGTTGCAGATTTCTTCCTATCTTGAACATGATCAAGAGCATGCGAGCTAGGAGTTGGAA TATTGTCTTGACCAGAATCCGGAGGGAGTGTAATGCTCTAGCGGATTTCCTTGCGAAATGGGGAGCAAGTGCTTCGTTAG TGGACATTTGTATTGTGGAAGATCCTCCCTGGGATGTAGAGACCCTTGTTATGAGGGATTTAGTTTTAGCTCCTTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0455200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGQPPQQGMVKLSFRDQIQGMGAGGLVRDSMGKWIVGFYAHRSGGNALVAEAHGLLLCLELLWVRGHRNAVVEVDCEDRL TALDDEESCRFLPILNMIKSMRARSWNIVLTRIRRECNALADFLAKWGASASLVDICIVEDPPWDVETLVMRDLVLAP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR46736:SF5 View details on PTHR46736:SF5 Search for proteins/transripts with this domain View external data on PTHR46736:SF5	3	154	152	2.1E-22	–
PANTHER	PTHR46736 View details on PTHR46736 Search for proteins/transripts with this domain View external data on PTHR46736	3	154	152	2.1E-22	–
Gene3D	G3DSA:3.30.420.10 View details on G3DSA:3.30.420.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.420.10	12	130	119	5.0E-9	IPR036397 Show description in modal box View details on IPR036397 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd06222 View details on cd06222 Search for proteins/transripts with this domain View external data on cd06222	13	126	114	2.37411E-19	–
Pfam	PF13456 View details on PF13456 Search for proteins/transripts with this domain View external data on PF13456	18	127	110	4.9E-14	IPR002156 Show description in modal box View details on IPR002156 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53098 View details on SSF53098 Search for proteins/transripts with this domain View external data on SSF53098	21	131	111	2.02E-7	IPR012337 Show description in modal box View details on IPR012337 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0004523 View details of GO:0004523 AmiGO InterPro QuickGO	Molecular function	RNA-DNA hybrid ribonuclease activity	Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.	Subterm of View details of GO:0016891

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0455200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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