Transcript — View — Lotus Base

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LotjaGi3g1v0458800.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0458800
Transcript ID	LotjaGi3g1v0458800.1
Lotus japonicus genome version	Gifu v1.2
Description	Ultrapetala; TAIR: AT4G28190.1 Developmental regulator, ULTRAPETALA; Swiss-Prot: sp\|Q8GZA8\|ULT1_ARATH Protein ULTRAPETALA 1; TrEMBL-Plants: tr\|I3SE50\|I3SE50_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0458800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:87336814..87341619) extracted from Lotus japonicus Gifu genome v1.2.

GTGATACTCAAATATATCTATTAAGTGTGTGCGGCGGCGACCGAACTCAACATGTATCCACCTCAAAACCAACTCATCAA ATCTGATCTGATCTACGCGTATTGAGATACGTGAAATCACACTGACATTAACTCTCACGCTAAACCAAACATCCACCAAA CTAAACCTGATCTTGTTACTCCAAGAGAGGATTTTTAGCCATAAACGTCTCTTCTCTCTCATTGATATTCTCCTCCTCCA TTTTCTTCCATATCATGCAACTATGACACCCCTTTTAACCTCATTCACCTCACAACATTTGTTACGCACACTTGGCCAGC TCATAACATTTATTCAACCCCATCAATCACCAACCCCTTCACACACTCTCTCTCTAGCTCTCTTACTTTCTCTCTCTAGT ATTTCAACGTTTCTCTCTCAGATCTCTAGGAGCAACGTGATATTTGGGTAATCCATTCTCTCTTCTCTTCGAGTTGCGTT TCTTTCTGGGTTCTCTTCATCTCGTGCTTCCATTGCACTTTTTCCTCTCCGCATTGAGGAGGACCCTTCTTCATATTCGA TTCATCGATTCTATACCCACATAGTTTTCTCACCAAAAACAGAGTCTTTTTCTCGAGAAAATGGCGACTGGGTTAGAGAG GGAAAGTGGGTTCACATTGTTCAGCGATGAAGAGCTGAGCGAGGTGTGTGGGGTGAAGCGTGTTGGGAACTGTGTCGAAG TCACGTGTGGGTGTACCAGCCATAGGTACGGTGATGCTGTTGGAAGGCTTAGGGTTTTCTCTAATGGGGACCTCGAAATC AGTTGTGAATGCACCCCTGGTTGCACAGAAGGTTTCTCTCTCTCTCTCTATGATGATGATGATGATTTTCGTTTTGTTTT GTTTTTTTGCTTATGTGCATGTTGATGGTTTATGATGATGAGGTTGGTTTTAACGTTGGTTGGTGTCATTATGGTGTTGT TTTGATCTGTTTTTGTTGATGGTGGGTTCACAGATGAAGTGTATGTTGATATGTCTCAATGAACTCGTTGGTTTGATACA CTACATGATGGACTAGTAGAGTGTTTGTTATATGCAAATGTTAAAAAAATCTTAATAACATGGCTTGTTTTTTTTATGAA GGTGGCCTTTCTATACTTTGTAGTACATGTTTAATAACATAGCATAACCATTATAGTTGATACATGATCTCCCTACTTTA CACTTCTTGGAAGTCATTGAAGTTTGTTTGGCAGAGTTTAGTAGACTATTGAGATCTTAAGGTATTGTTAGTCTATGATA TGTAATGGGTTTTAATATTCTCCATGTTGTGTTTGTGTGAATGTGATTGATGGATATTTGTATTTGGTAGGCCATTGTCT GTGCTACATATAGGTAGTTTTTAATTTATTGGAAACTGGGTGAATAAGTGTCTTGGCAGGGGCTGAAAGAGTCTGATTTT ATCAGTCACCGTGCATATCCATTATCAAGTTGTACTTCTTTCATGTGCATTATCCAGTGTTTATTTTGCTTACACAATGA TATATATAGGTAGAACTTAGTAGAATATCTGCTCAGGAAGAAGGACTAGCTAGTATACCTCAGCTGACGCATGAGGATGT ACTGATTTAAACAAGAAGTAATGGATGGTAACATTATCATAGCACGGCCAGGAGTGTATTGAAGTGATTGCTTCAATAAA TTATACATGAAATACCGACTTAAGGGAACAATTTTTTATAAAGTAATGTTACACCATGCCATCATGATTGAATTTGAGAA ATCAGTGACTGAATAAATGGATCATACGATTAAGCATGAATAACAATTTTGAAATTTCACTCACAAAAACGGGGTAAAAA TATATAATAAGAGAAAGAATTCTTAAGCCCTCTGCTGGAGTCTTGAGGTGGATGAGTCCAAATTTATTCGGTTTATATGA CTCTAATTCTTGAATGTGGTGGACAACGTGAGTAGATGATCCACTTATTACTTTCACTGTCTTTTGTTAGTATCATTTTA TATTTTTCAGCCTACATTAATAATTGAGTTCAGGTCAGAGTTATACGCCTTTATGCATTCATCAAAAACTTGTTTCTGAT TTTGATTCTCTATTTTGCATAATGTAATGAGAATTTGAAAATTTTATATATATCACAGTTCTTCTTCATGACCTTTTTTA TCTTTATTATGATGTTTTCTTGTTAGACAAGTTGACTCCTGCTGCATTTGAAAAGCACTCTGGGAGAGAGACAGCTAAGA AATGGAAGAATAATATCTGGGTAATAGTTGACGGTGAGAAGGTTCCATTATATAAAACGGTGCTGCTCAAATACTACAAC CAAGTCTCAAGAGGTGCTAATGGGTCTAATAAACACCAAAATGGTCACCGTGATGAGTTTGTTCGCTGTACTAGTTGCAA TAAAGAGAGGAGATTCCGTCTGAGGACTAAAGAGGAATGCCGCATTCACCATGATGCTGTGGCAGATGCGAATTGGAAAT GTTCTGATCTGCCATATGACAAGTATGTTTATTATCTATTAATATGCTATCACGAAGAAACTAAGTGGTGAATTTGTGTT CATGATGTTTGTTTGTAGGATTAGTCTTCATAAATTCACCATGCTTTGAAATTGAATGAATCTTGTTTACATTTTACACA AAATAGCTTCTTCTATCTTGCCACTTTCCAAGTTACTTCTTGGAGGTAGGATATGAAGATATAATATCCAGCAGGTCTTA TTATCGTTTTATGCTCTAGAAATTCTGTATCTTTTTTATGCACTGAGACTTCATATGGAGCCATGATAAATAATTGTTTA AATCCATTATATCTTATCATTATAGTGAAACTTTGGTACCAATGTATGTTAATTAATCATTGAAGCCTTGAAGGTACCAT GTCTTGGTGATGATACCATAAATGTTCCAAGCTGGAAGAGCTTAACCTGGCCTAGTTCTGGAATATACATAGTAGCATCT TAGTGATGATTATAGAGGTTTCTGAAACCAATTTTCTATTTGATCTGTGTTTATGTTTTTTCAAGAGCTAGTGATTTTCT TACACGGACTTAAATGCATCATCTGTTGTTACAAGTGCCTAAGTACCAAAATTTCAATTTGGTTAGCAGCTTGTAATGTG GAATTGTACATTGATTGGAAGTGGCCGAGGGACAAAAGTATACTCATTACTCAATATGGCATTGAGAAAATTTTGGGGTC CCGGCCAGGGATATAATAGGTAGATTCAAAGGTCAAAAGAAAACAAATTTCTCTCTGTTATTATGCTGTGATATCTTGAC CGGTACTTGTACTGGTCTTTCCATGCCAGTTTTAATGTGATTTGCATTTGGTTGGTCTGTGTTCAATTTCATCTAGCAAA AGGAGAACAATGCTCTAAAAAGCTGCAAAATAAAGAAAAATAGTTTTCCGGTACTGGTTTGTCAGCTTGTTTATCCTCCA TTTATACTACCATTACCATTGTCAGTTCTAATTATACTGTCATGCCTTATGATAATTAGCACTAACTGTCTTACCATACT ATGTACTGTGGCTGATACTATTGTTGTAGGTAGCTTCTTGCACTTCATTATTTGTTTATTTGTTGGCTTTGACATTTTGG TTGGTTATTACACACGTTATTTCCTATTACTAGTGCACCTTTGTACATGAAAGATTTTTCACTTTAATTTAGTTGATTAA ATCAGTCTAGTTTGGTGCTAGTTCCTCTTCACAATGTTTGTGGCCTTTAATTATATGGGATATCATAACTCATATTTGCT TTACTGTCTTTTTAACACAAGGTTCCGGATGAAAGACTCAAATTAATAGGACTCGTACTATTATTATGTGTAGCACTTGT TCTTGTTCATGTTTTTATTGTTGCATACTCAGCTGTACTAGAACTATATTGATGTATGTATATAATAACTTTTCAGAGTT ACATGTGATAATGAGGAAGAACGAGCAAGTCGTAGAGTTTACAGGGGATGCAACCGCTCTCCAACATGCAAAGGTTGCAC TTCATGTGTGTGCTTTGGGTGTGATGTCTGCCGTTTTTCAGATTGCAGCTGCCAGACTTGTACTGACTTTACAACCAATG CCAAAGCTTGATTCAGCCTTTCCATTCAATCTAATGCTCTCCAAGTTCTGCTTATTATGGGGATATATGTTTTATTTCCT AATTGGACCTTACCAGTCTGAGTTCAGCATTCATTGTTCTCTTTGACTGGATCATAAATTTCAATGTTAACAAACTTATT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCATATGTTAATTT GTTCATATATCATGGTATAAGAGAAAAACGTAAAAGGAATGACACAAAGTACTGATCTGATAATACTTTACCCGACCAGT TCCGTTATTTCTGGAAATGATAACAAATGTTTCCTAGTTCATTAATAGTGTCTATAGATGGTGGGGCATGTTAGTCCTCC ATGAATGTGCTTACTTATAAGAGGGTCCACATGTTTTGTTTAGCTATATATATAATGATAGGAGGGGTTGCTATTGCCTA AAGGCATGGGAAAGGAACTATTGAGTCTGAAGTAGGCTGGTTAATCTTGCAAGCCATATTTAAATTCTATTTGTTAATGT TCTAAATCTCCTTATTCCTTTATGTAGTATGGGACCTTCAATTTCTCTTCCTGGTGTGGAGAATGGAACCTTTACATCTT TTTTCCTTTCTTCTTTTCAATGATTCCTTTCCATAAGATGAATTATGTTATTCTTTTCCTTCCCCAAATGTTGTAATTCC CACTTC

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0458800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACTGGGTTAGAGAGGGAAAGTGGGTTCACATTGTTCAGCGATGAAGAGCTGAGCGAGGTGTGTGGGGTGAAGCG TGTTGGGAACTGTGTCGAAGTCACGTGTGGGTGTACCAGCCATAGGTACGGTGATGCTGTTGGAAGGCTTAGGGTTTTCT CTAATGGGGACCTCGAAATCAGTTGTGAATGCACCCCTGGTTGCACAGAAGACAAGTTGACTCCTGCTGCATTTGAAAAG CACTCTGGGAGAGAGACAGCTAAGAAATGGAAGAATAATATCTGGGTAATAGTTGACGGTGAGAAGGTTCCATTATATAA AACGGTGCTGCTCAAATACTACAACCAAGTCTCAAGAGGTGCTAATGGGTCTAATAAACACCAAAATGGTCACCGTGATG AGTTTGTTCGCTGTACTAGTTGCAATAAAGAGAGGAGATTCCGTCTGAGGACTAAAGAGGAATGCCGCATTCACCATGAT GCTGTGGCAGATGCGAATTGGAAATGTTCTGATCTGCCATATGACAAAGTTACATGTGATAATGAGGAAGAACGAGCAAG TCGTAGAGTTTACAGGGGATGCAACCGCTCTCCAACATGCAAAGGTTGCACTTCATGTGTGTGCTTTGGGTGTGATGTCT GCCGTTTTTCAGATTGCAGCTGCCAGACTTGTACTGACTTTACAACCAATGCCAAAGCTTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0458800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATGLERESGFTLFSDEELSEVCGVKRVGNCVEVTCGCTSHRYGDAVGRLRVFSNGDLEISCECTPGCTEDKLTPAAFEK HSGRETAKKWKNNIWVIVDGEKVPLYKTVLLKYYNQVSRGANGSNKHQNGHRDEFVRCTSCNKERRFRLRTKEECRIHHD AVADANWKCSDLPYDKVTCDNEEERASRRVYRGCNRSPTCKGCTSCVCFGCDVCRFSDCSCQTCTDFTTNAKA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34053:SF1 View details on PTHR34053:SF1 Search for proteins/transripts with this domain View external data on PTHR34053:SF1	2	232	231	5.6E-120	–
PANTHER	PTHR34053 View details on PTHR34053 Search for proteins/transripts with this domain View external data on PTHR34053	2	232	231	5.6E-120	IPR020533 Show description in modal box View details on IPR020533 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50864 View details on PS50864 Search for proteins/transripts with this domain View external data on PS50864	20	105	86	9.008	IPR000770 Show description in modal box View details on IPR000770 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01342 View details on PF01342 Search for proteins/transripts with this domain View external data on PF01342	59	96	38	1.8E-5	IPR000770 Show description in modal box View details on IPR000770 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0458800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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