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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0462700 |
| Transcript ID | LotjaGi3g1v0462700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT3G22104.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C5J4|Y3210_ARATH BTB/POZ domain-containing protein At3g22104; TrEMBL-Plants: tr|A0A0R0JVD1|A0A0R0JVD1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87778606..87780683) extracted from Lotus japonicus Gifu genome v1.2.
TTCATCTTTTTGGTTTCTGAGCTTTAATTATTGGGGAACTTTCCTTTCATTCTCTCCATTTTCCCAATTTTTTATCTCCA GTTCCTTTTCTTGTCTTTGTGCTCCAGTAATTCCAATGTCTTTGGTGGGTTACTTTGGTGTTTAACCAATTGTCACTGAT AGCTTTTTCCACAATGAAAAACTCCCCTTTACTTGTTTGCTGGAATTTCTTTCTTGTGTAGTTGTTCCTAAATTATTGTA CATTATTTGTTCTATAATAATCTAACTTTGTTCTAAATGGGTATTTTTGCAGAGGATTATTACTCAGTACTCAAACAAAT TGGCTAAATTATTTGGAAAATCTGGTGATGCTACTGGAAAGCTTAAAGTCATTTTCCATGATTTTCCAGGAGGCGCAGAA GGTTTTGAGCTTATGTTAAGATTCTGTTATAACAATGGCACAGCTGATATAAGTCCTTCCAATTTGTTACTCTCACATTG TGCTGCTGAGTATATGGAAATGAATGAATCTGTTGCTGGTGTTTCTAACTTGTTGAAGCAAACAGAGAAATCACTCCAAG AGATTAACTATTGGTCATGGTCAGAACTTTTGATTGCTTTGAAGCAGTGCCAGGATTCAATAGATGCAGATTGTTCTGTG ATGTTAGAGAGATGCTTGGATACTGTAGTGGGGAGGCTGGTTTTGGCCAGTGAAGCAAGCCCCTCTCCATCAACTTGTTC TACCGATAGTTTCGGGGTTCGGTATTCGTGTGATTCTAAAAGTACCGAGAGCATAAAGACAAGTTTCTCGCGTTCAACAT GGTTCGATGATCTCCTGTTTTTGAATCCCTTGTTGGTTGCAATGTTGGTGAAGTCAATGTTTTCACATAAGTTGGACCAT GTTGTCATCAGCAAGTTTCTTCTCTATTATCAGAAGGCAAAATTATTTACTGCTAGTGCGGAAGAGAAGTGTGAGATCAT TGAAATGGTCATTGATATGCATTATTACATGGACCAGAGCTCTATTTCCTGCAAGACATTGTTCGGGATTCTTCGTGTTA CTTTGAGTTTGAGCATAAGCAAAAGTAGCAGGAACAAGTTGGAGAATATGATTGGTTCCCACTTGGACCAAGCAACCTTG GACAATTTGCTTATTCCATCTCCCAATGGAATAAGCTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCATT CCTGCGTCAAGGAAATAGCCTACCCACTCCCATTCAGATGAGGAAAGTTGCTAGGTTGATTGATTTGTATTTAGCAGAAA TAGCCCCTGATCCTTGTTTAAAAGCTTCAAAGTTCCTGGCTCTTGTCACAGCACTTCCAGATTCTGCCAGAGATTCTTAT GATGAACTTTACCATGCAATGGACATGTATCTTGAGGTATAATAATTTTCCAATTTAAGTTTTAAGTAGGAAGTCTATAA CTTTGGTCACTTGTTAACTACTTCATTAAGAAAATGACTCGAATTTTCATGTTCTATTCTTTAGGAATTTTAATATGATG TATATAATATTTAGTCTTTAAACTTTATCTTATCGAATCTTCCCCCCAAATTTAAGGCCTACTTAAACATGGTGTAGTTG AACTGAATATGTTCTGTTATAGGTACACAGTCAATTATCACAAGAAGAAAGGGTGAAGATATGCTGTAGTTTAAATTATG AGAAGCTTTCATCTCAAGCTTGCCTGCACCTTTCTCAGAACACAAAATTTCCTTCAAAATCTGCAGTTCAAGCTTTAAGC TCTCAACAATCTAAGCTGAAAAACTTGCTACAAGTTACTCCTGGTTCAACTCCATACAACGATTCTCCGTGCAATTCCAA GGGGGTTGCTCAGAAGGGAAAGAAAGATAAAACCAGTGAACAGCTTGTGTTGTATGCTGACAATCATGATCTTTCAGCTG ATAATGAGAAACTCAGAGCACATTTGCAAGGAATGCAGTGGAGGGTTATGGAATTGGAGAAAATCTGTAGGAAAATGCAA GTCCAGATGACAAAGATGACTAAATCGAAAGTATCAGGCAATAGTTATGCAAAATCTTTGCCCAAGCTATGCTCATGA
CDS sequence (LotjaGi3g1v0462700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAAGATTCTGTTATAACAATGGCACAGCTGATATAAGTCCTTCCAATTTGTTACTCTCACATTGTGCTGCTGAGTA TATGGAAATGAATGAATCTGTTGCTGGTGTTTCTAACTTGTTGAAGCAAACAGAGAAATCACTCCAAGAGATTAACTATT GGTCATGGTCAGAACTTTTGATTGCTTTGAAGCAGTGCCAGGATTCAATAGATGCAGATTGTTCTGTGATGTTAGAGAGA TGCTTGGATACTGTAGTGGGGAGGCTGGTTTTGGCCAGTGAAGCAAGCCCCTCTCCATCAACTTGTTCTACCGATAGTTT CGGGGTTCGGTATTCGTGTGATTCTAAAAGTACCGAGAGCATAAAGACAAGTTTCTCGCGTTCAACATGGTTCGATGATC TCCTGTTTTTGAATCCCTTGTTGGTTGCAATGTTGGTGAAGTCAATGTTTTCACATAAGTTGGACCATGTTGTCATCAGC AAGTTTCTTCTCTATTATCAGAAGGCAAAATTATTTACTGCTAGTGCGGAAGAGAAGTGTGAGATCATTGAAATGGTCAT TGATATGCATTATTACATGGACCAGAGCTCTATTTCCTGCAAGACATTGTTCGGGATTCTTCGTGTTACTTTGAGTTTGA GCATAAGCAAAAGTAGCAGGAACAAGTTGGAGAATATGATTGGTTCCCACTTGGACCAAGCAACCTTGGACAATTTGCTT ATTCCATCTCCCAATGGAATAAGCTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCATTCCTGCGTCAAGG AAATAGCCTACCCACTCCCATTCAGATGAGGAAAGTTGCTAGGTTGATTGATTTGTATTTAGCAGAAATAGCCCCTGATC CTTGTTTAAAAGCTTCAAAGTTCCTGGCTCTTGTCACAGCACTTCCAGATTCTGCCAGAGATTCTTATGATGAACTTTAC CATGCAATGGACATGTATCTTGAGGTACACAGTCAATTATCACAAGAAGAAAGGGTGAAGATATGCTGTAGTTTAAATTA TGAGAAGCTTTCATCTCAAGCTTGCCTGCACCTTTCTCAGAACACAAAATTTCCTTCAAAATCTGCAGTTCAAGCTTTAA GCTCTCAACAATCTAAGCTGAAAAACTTGCTACAAGTTACTCCTGGTTCAACTCCATACAACGATTCTCCGTGCAATTCC AAGGGGGTTGCTCAGAAGGGAAAGAAAGATAAAACCAGTGAACAGCTTGTGTTGTATGCTGACAATCATGATCTTTCAGC TGATAATGAGAAACTCAGAGCACATTTGCAAGGAATGCAGTGGAGGGTTATGGAATTGGAGAAAATCTGTAGGAAAATGC AAGTCCAGATGACAAAGATGACTAAATCGAAAGTATCAGGCAATAGTTATGCAAAATCTTTGCCCAAGCTATGCTCATGA
Protein sequence (LotjaGi3g1v0462700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRFCYNNGTADISPSNLLLSHCAAEYMEMNESVAGVSNLLKQTEKSLQEINYWSWSELLIALKQCQDSIDADCSVMLER CLDTVVGRLVLASEASPSPSTCSTDSFGVRYSCDSKSTESIKTSFSRSTWFDDLLFLNPLLVAMLVKSMFSHKLDHVVIS KFLLYYQKAKLFTASAEEKCEIIEMVIDMHYYMDQSSISCKTLFGILRVTLSLSISKSSRNKLENMIGSHLDQATLDNLL IPSPNGISYLYDVNLVLRFLKAFLRQGNSLPTPIQMRKVARLIDLYLAEIAPDPCLKASKFLALVTALPDSARDSYDELY HAMDMYLEVHSQLSQEERVKICCSLNYEKLSSQACLHLSQNTKFPSKSAVQALSSQQSKLKNLLQVTPGSTPYNDSPCNS KGVAQKGKKDKTSEQLVLYADNHDLSADNEKLRAHLQGMQWRVMELEKICRKMQVQMTKMTKSKVSGNSYAKSLPKLCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 475 | 475 | 4.8E-203 | – | |
| PANTHER | 1 | 475 | 475 | 4.8E-203 | ||
| CDD | 3 | 46 | 44 | 0.00187613 | – | |
| ProSiteProfiles | 128 | 379 | 252 | 69.488 | ||
| Pfam | 129 | 355 | 227 | 2.2E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0462700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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