Transcript — View — Lotus Base

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LotjaGi3g1v0462700.3

Overview

Field	Value
Gene ID	LotjaGi3g1v0462700
Transcript ID	LotjaGi3g1v0462700.3
Related isoforms 2	LotjaGi3g1v0462700.1 LotjaGi3g1v0462700.2
Lotus japonicus genome version	Gifu v1.2
Description	BTB/POZ domain-containing protein; TAIR: AT3G22104.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp\|Q9C5J4\|Y3210_ARATH BTB/POZ domain-containing protein At3g22104; TrEMBL-Plants: tr\|A0A0R0JVD1\|A0A0R0JVD1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:87778773..87780683) extracted from Lotus japonicus Gifu genome v1.2.

TCCACAATGAAAAACTCCCCTTTACTTGTTTGCTGGAATTTCTTTCTTGTGTAGTTGTTCCTAAATTATTGTACATTATT TGTTCTATAATAATCTAACTTTGTTCTAAATGGGTATTTTTGCAGAGGATTATTACTCAGTACTCAAACAAATTGGCTAA ATTATTTGGAAAATCTGGTGATGCTACTGGAAAGCTTAAAGTCATTTTCCATGATTTTCCAGGAGGCGCAGAAGGTTTTG AGCTTATGTTAAGATTCTGTTATAACAATGGCACAGCTGATATAAGTCCTTCCAATTTGTTACTCTCACATTGTGCTGCT GAGTATATGGAAATGAATGAATCTGTTGCTGGTGTTTCTAACTTGTTGAAGCAAACAGAGAAATCACTCCAAGAGATTAA CTATTGGTCATGGTCAGAACTTTTGATTGCTTTGAAGCAGTGCCAGGATTCAATAGATGCAGATTGTTCTGTGATGTTAG AGAGATGCTTGGATACTGTAGTGGGGAGGCTGGTTTTGGCCAGTGAAGCAAGCCCCTCTCCATCAACTTGTTCTACCGAT AGTTTCGGGGTTCGGTATTCGTGTGATTCTAAAAGTACCGAGAGCATAAAGACAAGTTTCTCGCGTTCAACATGGTTCGA TGATCTCCTGTTTTTGAATCCCTTGTTGGTTGCAATGTTGGTGAAGTCAATGTTTTCACATAAGTTGGACCATGTTGTCA TCAGCAAGTTTCTTCTCTATTATCAGAAGGCAAAATTATTTACTGCTAGTGCGGAAGAGAAGTGTGAGATCATTGAAATG GTCATTGATATGCATTATTACATGGACCAGAGCTCTATTTCCTGCAAGACATTGTTCGGGATTCTTCGTGTTACTTTGAG TTTGAGCATAAGCAAAAGTAGCAGGAACAAGTTGGAGAATATGATTGGTTCCCACTTGGACCAAGCAACCTTGGACAATT TGCTTATTCCATCTCCCAATGGAATAAGCTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCATTCCTGCGT CAAGGAAATAGCCTACCCACTCCCATTCAGATGAGGAAAGTTGCTAGGTTGATTGATTTGTATTTAGCAGAAATAGCCCC TGATCCTTGTTTAAAAGCTTCAAAGTTCCTGGCTCTTGTCACAGCACTTCCAGATTCTGCCAGAGATTCTTATGATGAAC TTTACCATGCAATGGACATGTATCTTGAGGTATAATAATTTTCCAATTTAAGTTTTAAGTAGGAAGTCTATAACTTTGGT CACTTGTTAACTACTTCATTAAGAAAATGACTCGAATTTTCATGTTCTATTCTTTAGGAATTTTAATATGATGTATATAA TATTTAGTCTTTAAACTTTATCTTATCGAATCTTCCCCCCAAATTTAAGGCCTACTTAAACATGGTGTAGTTGAACTGAA TATGTTCTGTTATAGGTACACAGTCAATTATCACAAGAAGAAAGGGTGAAGATATGCTGTAGTTTAAATTATGAGAAGCT TTCATCTCAAGCTTGCCTGCACCTTTCTCAGAACACAAAATTTCCTTCAAAATCTGCAGTTCAAGCTTTAAGCTCTCAAC AATCTAAGCTGAAAAACTTGCTACAAGTTACTCCTGGTTCAACTCCATACAACGATTCTCCGTGCAATTCCAAGGGGGTT GCTCAGAAGGGAAAGAAAGATAAAACCAGTGAACAGCTTGTGTTGTATGCTGACAATCATGATCTTTCAGCTGATAATGA GAAACTCAGAGCACATTTGCAAGGAATGCAGTGGAGGGTTATGGAATTGGAGAAAATCTGTAGGAAAATGCAAGTCCAGA TGACAAAGATGACTAAATCGAAAGTATCAGGCAATAGTTATGCAAAATCTTTGCCCAAGCTATGCTCATGA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0462700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAAACTCCCCTTTACTTAGGATTATTACTCAGTACTCAAACAAATTGGCTAAATTATTTGGAAAATCTGGTGATGC TACTGGAAAGCTTAAAGTCATTTTCCATGATTTTCCAGGAGGCGCAGAAGGTTTTGAGCTTATGTTAAGATTCTGTTATA ACAATGGCACAGCTGATATAAGTCCTTCCAATTTGTTACTCTCACATTGTGCTGCTGAGTATATGGAAATGAATGAATCT GTTGCTGGTGTTTCTAACTTGTTGAAGCAAACAGAGAAATCACTCCAAGAGATTAACTATTGGTCATGGTCAGAACTTTT GATTGCTTTGAAGCAGTGCCAGGATTCAATAGATGCAGATTGTTCTGTGATGTTAGAGAGATGCTTGGATACTGTAGTGG GGAGGCTGGTTTTGGCCAGTGAAGCAAGCCCCTCTCCATCAACTTGTTCTACCGATAGTTTCGGGGTTCGGTATTCGTGT GATTCTAAAAGTACCGAGAGCATAAAGACAAGTTTCTCGCGTTCAACATGGTTCGATGATCTCCTGTTTTTGAATCCCTT GTTGGTTGCAATGTTGGTGAAGTCAATGTTTTCACATAAGTTGGACCATGTTGTCATCAGCAAGTTTCTTCTCTATTATC AGAAGGCAAAATTATTTACTGCTAGTGCGGAAGAGAAGTGTGAGATCATTGAAATGGTCATTGATATGCATTATTACATG GACCAGAGCTCTATTTCCTGCAAGACATTGTTCGGGATTCTTCGTGTTACTTTGAGTTTGAGCATAAGCAAAAGTAGCAG GAACAAGTTGGAGAATATGATTGGTTCCCACTTGGACCAAGCAACCTTGGACAATTTGCTTATTCCATCTCCCAATGGAA TAAGCTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCATTCCTGCGTCAAGGAAATAGCCTACCCACTCCC ATTCAGATGAGGAAAGTTGCTAGGTTGATTGATTTGTATTTAGCAGAAATAGCCCCTGATCCTTGTTTAAAAGCTTCAAA GTTCCTGGCTCTTGTCACAGCACTTCCAGATTCTGCCAGAGATTCTTATGATGAACTTTACCATGCAATGGACATGTATC TTGAGGTACACAGTCAATTATCACAAGAAGAAAGGGTGAAGATATGCTGTAGTTTAAATTATGAGAAGCTTTCATCTCAA GCTTGCCTGCACCTTTCTCAGAACACAAAATTTCCTTCAAAATCTGCAGTTCAAGCTTTAAGCTCTCAACAATCTAAGCT GAAAAACTTGCTACAAGTTACTCCTGGTTCAACTCCATACAACGATTCTCCGTGCAATTCCAAGGGGGTTGCTCAGAAGG GAAAGAAAGATAAAACCAGTGAACAGCTTGTGTTGTATGCTGACAATCATGATCTTTCAGCTGATAATGAGAAACTCAGA GCACATTTGCAAGGAATGCAGTGGAGGGTTATGGAATTGGAGAAAATCTGTAGGAAAATGCAAGTCCAGATGACAAAGAT GACTAAATCGAAAGTATCAGGCAATAGTTATGCAAAATCTTTGCCCAAGCTATGCTCATGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0462700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKNSPLLRIITQYSNKLAKLFGKSGDATGKLKVIFHDFPGGAEGFELMLRFCYNNGTADISPSNLLLSHCAAEYMEMNES VAGVSNLLKQTEKSLQEINYWSWSELLIALKQCQDSIDADCSVMLERCLDTVVGRLVLASEASPSPSTCSTDSFGVRYSC DSKSTESIKTSFSRSTWFDDLLFLNPLLVAMLVKSMFSHKLDHVVISKFLLYYQKAKLFTASAEEKCEIIEMVIDMHYYM DQSSISCKTLFGILRVTLSLSISKSSRNKLENMIGSHLDQATLDNLLIPSPNGISYLYDVNLVLRFLKAFLRQGNSLPTP IQMRKVARLIDLYLAEIAPDPCLKASKFLALVTALPDSARDSYDELYHAMDMYLEVHSQLSQEERVKICCSLNYEKLSSQ ACLHLSQNTKFPSKSAVQALSSQQSKLKNLLQVTPGSTPYNDSPCNSKGVAQKGKKDKTSEQLVLYADNHDLSADNEKLR AHLQGMQWRVMELEKICRKMQVQMTKMTKSKVSGNSYAKSLPKLCS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32370:SF25 View details on PTHR32370:SF25 Search for proteins/transripts with this domain View external data on PTHR32370:SF25	8	522	515	2.4E-223	–
PANTHER	PTHR32370 View details on PTHR32370 Search for proteins/transripts with this domain View external data on PTHR32370	8	522	515	2.4E-223	IPR043454 Show description in modal box View details on IPR043454 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd18312 View details on cd18312 Search for proteins/transripts with this domain View external data on cd18312	32	93	62	3.66041E-11	–
ProSiteProfiles	PS51649 View details on PS51649 Search for proteins/transripts with this domain View external data on PS51649	175	426	252	69.488	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03000 View details on PF03000 Search for proteins/transripts with this domain View external data on PF03000	176	402	227	2.7E-57	IPR027356 Show description in modal box View details on IPR027356 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0462700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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