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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0464600 |
Transcript ID | LotjaGi3g1v0464600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G21710.2 transmembrane protein; Swiss-Prot: sp|Q02912|DHSO_BOMMO Sorbitol dehydrogenase; TrEMBL-Plants: tr|I3SC35|I3SC35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0464600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87993827..87995435) extracted from Lotus japonicus Gifu genome v1.2.
TGTGAAGCACAAAGGTCAACCCTATCTTTCTTCTCATAGCACGTCTCTCTCTCTCTAGCCTTGTTTTTCCGTTGGAGTTT CAACTGTTACTTTAACTTCCTCAACACCCTGTGGCCCACATAAAGATTCTACACCACGGGGTCTCCTTTTTCTCCTTCTT CTTCACCCTTTAAGTACTTAATTTCGGTTATAAATTCCTCAAGAAAAGGTCTTCTCAACCTCTAGCTAGCTAACCAAACA CAAACACTCATATTATTTATGCCAAACACTAATTAAGCTTTATCTTGTTAGACTAATGGATCATTCTATCTACTCATGTA AAGGAAAAGCATCTGCCAGCAAAAACCAAAGTTGTGAGGAAAGTGGATGGACAGCTTATTTTGAAGATTTCTCAAAAGGA GGAGGCATAGAGCCTAGCTACTGTTCCAGTTTGGGTGGCTCCTCTTTGATCTCAGATGCTGCTTCTTACGCTGCATGGAA ATTTTCTCATCATCATCACAATCAATTATCAGATAATAAGGGTGCCCAAATTAATCCCCTTAAGAAGCTTTGTTTCAAGA AAGCAAGAACCAAACAGATATCAGAGGATGACCCTTTGGAGGACACTGCTAGCTCTCCAGTCAACAGCCCCAAGGTATAT TAGTTTGGATCAAACTTTCTCCTTTCATATTGAATTCTAAGACTCAGAAGCTACTTAGCGCATATTTGGGAATTCTTCGA TAACTGATTCTTAAGACATAATCAATTATGAGAAAAACTTGTTTGAGTAGCTTTTGATTTCAAAATTAATTAATTAAAAA GAAAAATTGATCTATACATGGTATTAGATTAGAGTTTTTGTTAGAATTGATTTTAACTTTAAACACGATTGTACAAGGCC TTCGCTCTCTCAATATTCATGGTGAGATTTTTATTTTTTTCCATCTTTTAATAATATACTTGTGAATTATATCAATAGGT GAGAGACTTGAGTCCAACTGAATTCATTTCCAGGAAGATTGATGATCAACTAGAGGGTTCTATGGTAAGTGGAAAACCTG AATTAATATAATATTGCTTTTCATAATAAATAAATTTGGTTACCGATCCTAATCAAAGTTCTTTGATTGATGATCATGGT TGTGTAGGGTAACAGATTCACATCATCAGAGAATTATTCAGATTTGCAAATAGAAGATAAGCATATTGATGAAGCATTTA ATAGGAACAATATGGATTGCACAGACTTGAAGAAAAGAGGGCTCTGCCTGGTTCCTTTGTCCTTGATTAATTATTTGGGA TGACTGATTAATTATTTGGGGTGTAATGCTTTTGTATATAGCTTCTCTCTTTCTCTACCCCTCCTTGTCTCCTCTTTGTG TTCTTTTATTTGGATCAAGAAATTGTATACAATAATACAAAGCATATGATTAGTGTCTACTAGTGTGATATATAGTTTGC AATATATAGCAATCCTAATTAATTAACATCGTGATAAATCTGTGTTTATTAATTAACTTGTTCATAAAAAGGAAGCTCAA GAAAGTTGGAGTCTCAGGTTTCTCCAGGGGAAATAATCACTGCATATGCATATTATAGAAAAAATAAAAAGATATAGTAT AAAGTTGAA
CDS sequence (LotjaGi3g1v0464600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATTCTATCTACTCATGTAAAGGAAAAGCATCTGCCAGCAAAAACCAAAGTTGTGAGGAAAGTGGATGGACAGC TTATTTTGAAGATTTCTCAAAAGGAGGAGGCATAGAGCCTAGCTACTGTTCCAGTTTGGGTGGCTCCTCTTTGATCTCAG ATGCTGCTTCTTACGCTGCATGGAAATTTTCTCATCATCATCACAATCAATTATCAGATAATAAGGGTGCCCAAATTAAT CCCCTTAAGAAGCTTTGTTTCAAGAAAGCAAGAACCAAACAGATATCAGAGGATGACCCTTTGGAGGACACTGCTAGCTC TCCAGTCAACAGCCCCAAGGTGAGAGACTTGAGTCCAACTGAATTCATTTCCAGGAAGATTGATGATCAACTAGAGGGTT CTATGGGTAACAGATTCACATCATCAGAGAATTATTCAGATTTGCAAATAGAAGATAAGCATATTGATGAAGCATTTAAT AGGAACAATATGGATTGCACAGACTTGAAGAAAAGAGGGCTCTGCCTGGTTCCTTTGTCCTTGATTAATTATTTGGGATG A
Protein sequence (LotjaGi3g1v0464600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHSIYSCKGKASASKNQSCEESGWTAYFEDFSKGGGIEPSYCSSLGGSSLISDAASYAAWKFSHHHHNQLSDNKGAQIN PLKKLCFKKARTKQISEDDPLEDTASSPVNSPKVRDLSPTEFISRKIDDQLEGSMGNRFTSSENYSDLQIEDKHIDEAFN RNNMDCTDLKKRGLCLVPLSLINYLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 186 | 186 | 2.8E-56 | – | |
PANTHER | 1 | 186 | 186 | 2.8E-56 | ||
MobiDBLite | 97 | 116 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Xylem development | The formation of the principal water-conducting tissue of a vascular plant. |
Expression pattern of LotjaGi3g1v0464600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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