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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0470500 |
| Transcript ID | LotjaGi3g1v0470500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ubiquitin carboxyl-terminal hydrolase; TAIR: AT5G22040.1 ubiquitin carboxyl-terminal hydrolase; Swiss-Prot: sp|Q9W6V6|TEN1_CHICK Teneurin-1; TrEMBL-Plants: tr|I3T8Z1|I3T8Z1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0470500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88606336..88611683) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTGCTAATTTATATTTTTGAAATGCGTGCTTTCGTGTTCTTCCCCATCTTGTTTAGGGCTACCAAAATTCCCAATC CTCTCTCACTTCTTCACCCTCATCACCTACCATGCTTCCAAACTGCAACTGATTCCAATTTCCGCCCGATAATTGCACCC GAAATTCCAATTCCTCCGTCATTTCATCTGGGTAGCTCAATAATCGAAAGAAATCGACGGTGCCTGGTGATTCGGTACGT TGTTTTGTTTTTTTTACTCAGATGAGAGTCTCATATTTTTCCCTATAAAGATTTTATCTTTTTCAGTTTTTATCCCTGCC CATAAGTTTCAATCTCTGTAAACTTGCATAACTTTGCTATCTTAGATTTATTTTAGCTTTTAGTTTGATTTCTCTAGCCC ATAGATTATATATGTATATATATACATATATTATGCATTATTCTATAGTATTTGTTTCAATTTGTTAATGGAGAGACCAA TTTATGTATACATGCATGGTTACTTACAATTGAAGTGTAGGCTATGTAAAGTGATTGGTTTGGGTTTTTGTGGCTTTAAT GTTGTGTAGGTTGTTGGTATCAGATAGGAAACAATGAGACGGCAGGGGCAGTATGGTGATCCGTCTGCAAATACTTATGC TGCTTCGCAGATGCATCATATGGCCGGTCAAAGGGCCGAAACCAAGTCCGGTAGTTTTGAAGGGCGGTTAGAGGCCTTTA CTCCGGAGAGAGAGAACCCGTACGCAAATTCCAAACCGGAGGGTCAGTGGAGATGGGAAGTGGATGAATCGAAGATGTCT AATTCAATGACGTCTCGCGTGTATAATGAAGGCAAGTGCTATTCATTGCCTCTTCATTCTTGCTTGCTTATGCATCTTCG TATATCAAAGGCTCTATTTACTTAGTCAAACATTGCATATGAATTTAGCAAAAACCATCATTATTTTGGAACTTAGAGGT TTTTAATGTGATATAATATTTTAAATTTTTAACTAATATTGCAACTAGATATAATATTTTACGTGTTTCCTAGTTAATTT TTTTTAGCGAATTCATTTTAAAATATAAAGAAGGGTTGTCAATAGTGTGCTATAGGCCTATAGCGCCTTAGCGGGCCCAT TGTCGCTCCTTGTTCCCAGGGCATCGCATTTCAGAGCAGAAGCCGTTGCGGACGCTAAAGGGGAAGAAATAGAGGCATCA CGACGCTAGTTGATGCTATAGGAAGGGATGGACAAAGTCCCTAACATTGCCTGCAGAATGTCAGGATCAGGTCATCTTTT AGGATATATTTTAGGGTTTCTGTTCGGAAATATAATTAAAAGGCTCTGATCGTAGTAAAAAACCTTAGTGCACATCTTTC ATCCCTTCTCAGTCTGAGACTCTGAGCTAACCTACTGCCGACCTGCCATTACATGATCCTATAGTGACCCTCCCTATATT TGATTGCTATAGGAAAGGATAGACAAAATCCCAAACATTGCTTGCGGAATGTCAGAATCAGGTCATTTTTTGGGATATAT ATTAGGGTTTCTGTTCGGAAATATAATTAAAAGGACTGATAGTAGTAAAAAACCTTAGTCCACACCTTTCATCCCTTCTC AGTCTGAGACTCTGAGCTAACCTATTGCCGACCTGCCATTACACGAGCCCATAGTGATCCTCCCTGGCCACAACGATTTC TGTTTTCCCAGGCCTAAAGTCTAGCAGCATAAGGATGCTGTCTTCCCCCCCGCCCCCCCCCCCCCCTTTTTTACGGGTTC TTTTGTGATTTATTTTTGTCTCCCTGGTCTGACACAACAACTTTCTCTTCTAGTTCCCTTTTCCTTTTTTTCTTAATTGT GTTGGTTCTGTTTTGTATGTTTTGTTCTATAACTTTTTATTGTTGATTACCAATGCCCATTTTTCGTCTGGGATTGACAA CATTGCTCTAATAAGAGTGACTAGTTAATCAGATGTTTTTGTTCATCTTTGCAAAGATTGATCTATTCAATACTTATTTC ATGAAGTAGACTGAAACATTGGGTTTCAAAGTTGCTTGAGAGGGGTAGTTTTCACCAAAAAAACACAGAGTCTTGCGAGG AGCACTGTGTGTGTGTGGAGTGAAGCACATAATGAATTCTACTTTGAAAAAAAATTCACACTGCAAACTTGTTCAAATTC TTAAAAAATACAAGCTGTTAATTTGATGAAGATTGAAGAGAGAGGAAGGGAGGAAGGATGGAGAAAGAAATAAAAAAAGA TAAGTAACTGACGAGCTAGTAATTAGTATATGATATAGTTATCTGAAACAATTTATTTTTGTTATTTCAATTACTCAATT ACACATATAGGTATATTTTAAAATCTTATAACCTCATTAATGTATAATCATTTCATAACAATGAATTAAAATAAGGATTT CTTTTAAAATGTTCTTTTCAAAAAGTGACGATTGAAAACTACCTTCATGTTCTCTTTCGGTGATAGTGGAGGCAATCCAT CTATTCTATCTTTCTGAAGTATGCACATTGACGTTGTATACATAGGAATGGGCATTTAAGTATCTACTCATTCTGTTATT CATGCTGCCAGGGTGCCATCTATTTTTTGAGAGACATAGCTTTGCCCAATTTTTTTAAATGCCAATTGTTTTATTTAAAA GGTGATAGAGGGTCCGGTCATGTTTTGTTTGTAGTTTTTCCCCTAAAAAGGAAAATGGACCTTTCTTTATTGCACGTCTT CGTTCATGACCATTTGACATTATTAAAATAATGATGCCTATTATGGCTTTGTTTCTTTGTGCAGTGAGTTATACCTTCTC TAGAAGAATGTTAAAACACTTAGATTCCCTGTAATGTTAACCTTTTTTCTGTGCTACAGTATTGAGGTTTCTGTTACTGA ATTAGAACTTAGAAGTGAGGTAATAACCTTGGGGATTAATATCATGAAGTCGTTTATAGAAAAGATCATTGATGTATCAT GTGACCAGATTGGGGTGGATAATCTTATTAAATGCTGTCCTTTCCAGTTTGAGGTTTCTGTTACTGAATTAGAAGTCAGG TAATAACCTTGGGGATTAATATCAGGAAGTCCTTTATAGAAAAGATCATTGATGTATCATGTGACCAGATTGGGGTGGGT AATCTTATTAAATGCTGCCCTTTCTAGTTTTTTGCTAAATGCTTATTGTTATCCATGTTCCTGGTATATGCCTAAGCCTA ACTACAAAAGTTGTTTTTTTTTTCAACAAATTGATAGGTATCGACCTCCTATTAGGAAGGTCTATGAGAGGAGGAATAGG AAGAGGGGATTGGGAATAGCTGTATCCTAAACTTCTTCAGTTACTGAAAGTGTACTTGTAAATATTAAGCCAGGAATTAT GTGCATAGGCCTATTGTTAGTAGCAGTTAGGCTATTTCCTATAAATAGAGGGAAGAGTCAGTTCAGTTAGGCAATTTCTG TGTAGTGTTTGGGGAGAGACTGGACTCTTGAAACTCCAGAGTATTCTTTTATCCTAGGGTTCCTGGTTCTCATCTATAAT CTTGAACCAGTTCTGATTGAATAAATCAATTCTTTTTCCCTTTTTCTTAATCTCATCATGAATGCACTTAAAAACAGTTA CTGGTGTATATAAGATGAATACAACTCTTGGTGTGTGTATTAAGTTCGTTGCTGTGGTATTCATGTTTGGAAAATATTAC CACATTTACATAAACTATCTTAATTTTGAATTGTTAGAACGTTAGCCGTTAGTTACTATGTCTAAAATGTCACAAGTTAC AGATTTGCCATTTACATCATGGAAATGATTTTCAAACTCCTAAACTTGGGAAACAATTGAATTTTTCAGGTCAAGGGGGT GATGCTTCAAGGTCATATTATCAAGGGCAGAGGCCAGATCCCAAGTTGAACTTACAGAACCGGAGCAACAGTGAATCCAG ATCTCAGGCTCATGAAGAAGATATGGATGTTGGATATGAGGGAGCTCATTTATCACAAACTTTTGAAGGTCTTGAGAAGA ATTTTCACGATGACATTATGAAACTAACCAAAGAACAGGATGATGCTGAAGATGCAGAACATGCCAGACACAGAGAGGTT AGTGTATTACATTGACAATGTAATCTTTTTTACTTAATTGTGCTTTTGGTCCCTCTAGTCTCACCTATGCATGCTTTTTG TCCGTAGTTCTTTTTCTAATTAAACAAATGTGTCTTGCACTTGGTGTGTTGTCCAGTTTTCATCCAGTTAGGTGACATGA TAATGATAATCATTCCTGGCAAGGAATAGTTCTGACATGAATCTGCTCTTTTTCATGCTTTAAGATAAAGAACATATGCT CTAGAAAAAAAAATATCATTCCACATGCGGCGCATGTCCTGCAGCATTGTATTTCAGAAATCTATGCCACTATGCTTTGA AACTGGATATACTAGGGATGACCAATATGGCAATATGAATCCTATTAATGTTGAGATCTGTAAGGCCCCCTTTGCAAGAG CTTATTTGAGCTTATCTTACAGCATGAACGTTTATGCAAGCTGGTCAGGTTAGCTCATGAATAAACGTTTATGCGATAAA TGTTTATGCCATAAGCCCTTAAGTAAGCTATTTATCCAAACACACCCTAAAAAAATTCTGTCTCTCAATTCCGTCGAGCT CTTACAAAGTTCATGTGCTTTTCATTTTCAGAAAATAAATGCAATCAATACTCAGTATGAAGAAAAACTGGCGGCACTCC GAGCTCGGCATAGCAATCGTAGAGCTGACTTTCTTCAAAGGGAATCAAATGTAAGACAACAGCAGTATGAGCAAATCATT AGAGATCCTTACCCCAGCAGTGGCATGCCACCCAGAGAACCTCATGGTTACAGCAATGTCGATGTTTCGCCTGCGGGTGG AGAAGTGCAACGAGGCTATTCTGCTGATCACTTTGATCCTTACCGAGAGCGAGCTCGATTTCTTGCAAGTGGAAGAGACC AAGGATTTGAAACTAGAGGTCCTTATCCTGGAGGCCGTGTCTATGACACTGGCTCACGCTACTACAATTGAGCTTTGGCT AAAGGTTGAGGTTTCATTTTTGGTTTGTACTGTAGGTGCAATTTGAATTGCATATATTGACATCGAGGCTGTGTCATTTA ACCATCTTTTGTTATCCTGTCTAATGTTTACTGATCCGTTGCTTAGCAGCTATGTTAAATAAATTAAGGATAAAACTTAC ATGCAGTACTTTGGTTCATTGGTGTTGGAGGTGCACACATTACACTGGTGTTGTGCATTTAGATGTAGGATCAGCATTTG TTTAGAGCAAATGGAATGGAGGAACTCTCGTCAGTTGCTAATAGTAATTTTTATATAACTTCTGTTTA
CDS sequence (LotjaGi3g1v0470500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACGGCAGGGGCAGTATGGTGATCCGTCTGCAAATACTTATGCTGCTTCGCAGATGCATCATATGGCCGGTCAAAG GGCCGAAACCAAGTCCGGTAGTTTTGAAGGGCGGTTAGAGGCCTTTACTCCGGAGAGAGAGAACCCGTACGCAAATTCCA AACCGGAGGGTCAGTGGAGATGGGAAGTGGATGAATCGAAGATGTCTAATTCAATGACGTCTCGCGTGTATAATGAAGGT CAAGGGGGTGATGCTTCAAGGTCATATTATCAAGGGCAGAGGCCAGATCCCAAGTTGAACTTACAGAACCGGAGCAACAG TGAATCCAGATCTCAGGCTCATGAAGAAGATATGGATGTTGGATATGAGGGAGCTCATTTATCACAAACTTTTGAAGGTC TTGAGAAGAATTTTCACGATGACATTATGAAACTAACCAAAGAACAGGATGATGCTGAAGATGCAGAACATGCCAGACAC AGAGAGAAAATAAATGCAATCAATACTCAGTATGAAGAAAAACTGGCGGCACTCCGAGCTCGGCATAGCAATCGTAGAGC TGACTTTCTTCAAAGGGAATCAAATGTAAGACAACAGCAGTATGAGCAAATCATTAGAGATCCTTACCCCAGCAGTGGCA TGCCACCCAGAGAACCTCATGGTTACAGCAATGTCGATGTTTCGCCTGCGGGTGGAGAAGTGCAACGAGGCTATTCTGCT GATCACTTTGATCCTTACCGAGAGCGAGCTCGATTTCTTGCAAGTGGAAGAGACCAAGGATTTGAAACTAGAGGTCCTTA TCCTGGAGGCCGTGTCTATGACACTGGCTCACGCTACTACAATTGA
Protein sequence (LotjaGi3g1v0470500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRQGQYGDPSANTYAASQMHHMAGQRAETKSGSFEGRLEAFTPERENPYANSKPEGQWRWEVDESKMSNSMTSRVYNEG QGGDASRSYYQGQRPDPKLNLQNRSNSESRSQAHEEDMDVGYEGAHLSQTFEGLEKNFHDDIMKLTKEQDDAEDAEHARH REKINAINTQYEEKLAALRARHSNRRADFLQRESNVRQQQYEQIIRDPYPSSGMPPREPHGYSNVDVSPAGGEVQRGYSA DHFDPYRERARFLASGRDQGFETRGPYPGGRVYDTGSRYYN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 118 | 118 | - | – | |
| PANTHER | 1 | 280 | 280 | 1.6E-128 | – | |
| PANTHER | 1 | 280 | 280 | 1.6E-128 | – | |
| MobiDBLite | 64 | 108 | 45 | - | – | |
| Coils | 161 | 181 | 21 | - | – | |
| MobiDBLite | 206 | 242 | 37 | - | – | |
| MobiDBLite | 254 | 281 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0470500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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