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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0474300 |
| Transcript ID | LotjaGi3g1v0474300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase; TAIR: AT1G52340.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q94KL7|SILD_FORIN Secoisolariciresinol dehydrogenase; TrEMBL-Plants: tr|I3T374|I3T374_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0474300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89081479..89084972) extracted from Lotus japonicus Gifu genome v1.2.
CAAACCCCTCATCATCTTGAATTCCAAGGTACCTTCTAGTCAGTAGAGCCGAAACCAAGTACGGAGACACGCAATTCACG CGAACACCAAATGGTCTAAGCTCCACAACAGAGTTTCTCACCAACCCTTACTTATATATGGGAATGTTGTTTTCACTTCT AACCTAACTTTTCAGATAGAGTTAAACCTAACATAATTTCCAAGAGAGACTTCAAATTCAATTAAAACACCATTGTTTTA GCATGTGGTTCCGAGTGTTGCAAGTAATAATGCTACTCTCTATAAGACGGCAAGACCAGTAAAATTCAGATTCAAGTTTC ACTATTAGATAAAGGAAGGTCGAAGACTTCGAGTGAAGATACTTCTGCTCTTAGCTATCCAGAAACTTGAAAAGCTTACC CACATGGCAAGTATTTCTTTAGTCTCAGCTGCTCTAAGAAGGTAAAGAATTTGAAACATACACTTCAGTCATATTGTCTC AAGTCTTAACTGATTCATGATCATTTGCTGCAATATAAATCCAAGTTTTTAATCTCATATGACGTGTACTGTTTTCCCTC TAATATAAAAGCAAGCAACACAACCAAATATTATTCTCACTACGTGAGACGTTACACAGAAAATACTATCATATGTTCTG TTATGCATTCTTCATATTAAATTATTCGTTAATAACATACAAATTCAAACATTCTAAGTAATTCTAAGCTTCTCTAACTA TTTTTGGACAAGGCTTGAGGGTAAGGTGGCTCTGATCACTGGTGGAGCTAGCGGAATCGGTGAAGCCACTGCAAGACTCT TCTCCAAGCACGGAGCACAAGTGGTGATAGCAGATATTCAAGATGATTTGGGTCACTCTGTTTGCAAAGACTTAGAATCC GCTTCCTTCGTCCACTGCAACGTGACCAAGGAAGATGAGGTCGAAACCGCCGTGAACATGGCGGTTTCCAAGCATGGAAA ACTAGACATCATGTTCAACAACGCCGGCATATCCGGCAACAACAATACCAGCATCCTCAACAACACGAAATCAGAGTTTG AGCAAGTTTTCAGTGTCAACGTCTCTGGTGCGTTTCTCGGAACGAAGCACGCGGCGAGGGTCATGATTCCTGCACGTAGG GGAAGCATAATTAACACGGCGAGTACTTCTGGAGTAATTGGCGGCGGCGCTCCACATCCCTACACGAGTTCAAAGCATGC GGTGGTGGGGTTGATGAGGAACACGGCGGTGGAGCTTGAAGCTTACGGTGTTCGGGTGAATTGTGTGTCGCCTTATTTTG TTCCAACGCCGATGGTTAAGAATTTCTTCAAGCTTGGTGAAGAGGATGAAGTTCCAAAGTTTTATTCTAATCTGAAAGGT GCTGATCTTGTGCCAGAAGATGTGGCTGAAGCTGTTCTGTATTTGGGAAGTGATGAGTCTAAGTATGTTAGTGGTCACAA TCTTGTGGTAGATGGGGGATTCACAGTGCTAAACAATGGATTTTGTGTGTTTGGGCAATCTGTATGAAACTCTTATCACT TCATCACGTGTCTTCTCAGTTTCTATTTTCTCAAAATCAATTCTGATGCGCAAAATTGATTATAACTTTAAAATCAATTC TATAAGCACCAAACTTGTTGTGTGTATAGTATTCATGTCTTTGAACAATTATTGTTGATGTTTTCAGTGTTTGTATAAAC TATAAAGCTTGTTTTGGTGCTATCTATCGGTCACTTCTCTGAGATACACAAGCATCGTTTGTACACAAGTGAATATGAAT AGCTGAGAAGGAAAAAAAACAAGGGAGGTCCGTACAATTAATATGAAATTGACTGTAGCAGATTGTCTTGTATCATGTCT CATCTGTTGCTCATTATTCAAGTTTGGTACAATCTGAGTGAGCAGTTATTTTCATGACTTTACATTTCACTGGTAAAATA GGTGGTGGAAACAAACTCTGATGGAACAAAGATAAGCCCGTGCAAAACTAGGAGCCGTTTGGTTACCGATAAAGAAAATT GGTGAACTATCTCGTGACACTTTTTCTTCTTAATAATAAACCCACAATATGGATATAATTTTTAATTATGCTGCAGCTAG TACATAGCTAATGCATCCATAATTTTTCTGAAGATGTATGATTGTTCTGTTCTTGTACCACATCCTTTCATTTTAGTTGA ATAGCTTAATTTGCTCCCCTCCAGAACTCATGCTTTTGCTTCAACTTCTTCTAGATTTTATGAGTCATGATCAAGAAAAA TTCATCATTTCTATATAAGTTCATAAAACAAATTCCATGTCACCATTATAAGAATATTAGAGATTAGAAAATACATTGTT TGATGAAGTGTGAAACAAACACACACCACATAAAACTGTTAAACAGCAAAAAGCATAACTATGATTGTCCAAACACACAA TAACCAGAATTCAAAACACTGAATCCCCCATCCACAACAAGATCATGCCCACTAACATACTTGGACTCATCACTTCCTAA ATAAAGAGCAGCTTCAGCAATATCCTTATCCTTAAGAATAACACCTTTAAGATTTGAATAAAACGCACCAAACTCCTCAT CATCTTTAAATCCAAGGTTCCTTCTAGTCAGCGGCGTCGGGACCGCGTACGGAGAAACACAATTCACACGAATACCAAAC TGTCCAAGCTCCACAGCGGTGTTTTTCACCAGCCCCACGACGGCATGTTTCGAACAAGCATACGCGTGGGACGCCATGCC ACCCACGCGCCCGCACACGCTGCTGGTGGCAATAATGCTGCCCCGTCGAGCCGGGACCATGACCCTCGCCGCGTGCTTGA TCCCGAGGAAGACGCCGGTCAAGTTCACACCAATGACCTCTTCAAAGTTTGATTTAGAATTCTCCATTATGTTTGGATTG AACACGCCGGTTACGCCTGCATTGTTGTACATGATGTCTAGCTTGCCGTGCCTGGAAACGGTTGTGTCCACTGCATTTTC TATGTGGCTTTCGTCCCTCACATCGCAGTGGACGTAAGAAACAGATGAAGATGATGATGATGATGGTGATGATGGATTCA AGTCTTTGCAAAGAGAGTAGCCTAGCTCGTCTTGAATGTCAGCTATTACCACTTTGGCTCCATGTTTTGAGAATAGTCTT GCAGTGCTCTCGCCGATTCCGCTTGCTCCGCCGGTGATTAACGCCACCTTGCCTTCTAGCCTGTTTACAAAATTGTGTAC ACATCCATCACAAAGTTAATTTGTTAGAAAATGTGGATGATATAATAATTCAAAGTAATTTTATTTTTGTAAGAAAGAAA AAGATGAAAATAATATTGGAAAAATTGTGAGTTTGTTTTGTTAGGGGACATATATTGCAGACTTGCTTGGGATTCACTCA CCTTCTGGCAAAATTAGAGGAGACTACTGAAAAACTTGCCATACTGAAGCCGCGCGCCGCACTGGAATAATGAAGATAAA ATAAGAGAACAGAATAATATCAAAACCACATAAAAAATGAATCTGAGGATAATC
CDS sequence (LotjaGi3g1v0474300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGTATTTCTTTAGTCTCAGCTGCTCTAAGAAGGCTTGAGGGTAAGGTGGCTCTGATCACTGGTGGAGCTAGCGG AATCGGTGAAGCCACTGCAAGACTCTTCTCCAAGCACGGAGCACAAGTGGTGATAGCAGATATTCAAGATGATTTGGGTC ACTCTGTTTGCAAAGACTTAGAATCCGCTTCCTTCGTCCACTGCAACGTGACCAAGGAAGATGAGGTCGAAACCGCCGTG AACATGGCGGTTTCCAAGCATGGAAAACTAGACATCATGTTCAACAACGCCGGCATATCCGGCAACAACAATACCAGCAT CCTCAACAACACGAAATCAGAGTTTGAGCAAGTTTTCAGTGTCAACGTCTCTGGTGCGTTTCTCGGAACGAAGCACGCGG CGAGGGTCATGATTCCTGCACGTAGGGGAAGCATAATTAACACGGCGAGTACTTCTGGAGTAATTGGCGGCGGCGCTCCA CATCCCTACACGAGTTCAAAGCATGCGGTGGTGGGGTTGATGAGGAACACGGCGGTGGAGCTTGAAGCTTACGGTGTTCG GGTGAATTGTGTGTCGCCTTATTTTGTTCCAACGCCGATGGTTAAGAATTTCTTCAAGCTTGGTGAAGAGGATGAAGTTC CAAAGTTTTATTCTAATCTGAAAGGTGCTGATCTTGTGCCAGAAGATGTGGCTGAAGCTGTTCTGTATTTGGGAAGTGAT GAGTCTAAGTATGTTAGTGGTCACAATCTTGTGGTAGATGGGGGATTCACAGTGCTAAACAATGGATTTTGTGTGTTTGG GCAATCTGTATGA
Protein sequence (LotjaGi3g1v0474300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASISLVSAALRRLEGKVALITGGASGIGEATARLFSKHGAQVVIADIQDDLGHSVCKDLESASFVHCNVTKEDEVETAV NMAVSKHGKLDIMFNNAGISGNNNTSILNNTKSEFEQVFSVNVSGAFLGTKHAARVMIPARRGSIINTASTSGVIGGGAP HPYTSSKHAVVGLMRNTAVELEAYGVRVNCVSPYFVPTPMVKNFFKLGEEDEVPKFYSNLKGADLVPEDVAEAVLYLGSD ESKYVSGHNLVVDGGFTVLNNGFCVFGQSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 266 | 263 | 2.0E-81 | – | |
| PANTHER | 13 | 264 | 252 | 1.7E-122 | – | |
| PANTHER | 13 | 264 | 252 | 1.7E-122 | – | |
| CDD | 13 | 257 | 245 | 1.77117E-123 | – | |
| SUPERFAMILY | 15 | 258 | 244 | 4.64E-74 | ||
| PRINTS | 18 | 35 | 18 | 2.0E-38 | ||
| Pfam | 23 | 257 | 235 | 2.9E-65 | – | |
| PRINTS | 88 | 99 | 12 | 1.5E-9 | ||
| PRINTS | 88 | 99 | 12 | 2.0E-38 | ||
| PRINTS | 137 | 153 | 17 | 2.0E-38 | ||
| PRINTS | 143 | 151 | 9 | 1.5E-9 | ||
| PRINTS | 163 | 182 | 20 | 2.0E-38 | ||
| PRINTS | 163 | 182 | 20 | 1.5E-9 | ||
| PRINTS | 184 | 201 | 18 | 2.0E-38 | ||
| PRINTS | 220 | 240 | 21 | 2.0E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0474300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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