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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0479700 |
| Transcript ID | LotjaGi3g1v0479700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Low molecular weight tyrosine-phosphatase, putative; TAIR: AT3G44620.1 protein-tyrosine phosphatase; Swiss-Prot: sp|Q55535|Y328_SYNY3 Putative low molecular weight protein-tyrosine-phosphatase slr0328; TrEMBL-Plants: tr|I3SZF6|I3SZF6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0479700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89683277..89686294) extracted from Lotus japonicus Gifu genome v1.2.
GCCCACAATAGTGTACCAATTTTTATGAAAATGAAATAGACCAATGACAATATAAAAAGGATATGTCATTTTTGCTTACC CTCAATTCATGGAATATAGTGTGTAAAGTTTCTAGTGGAGCTCTTCCCCTCCTTAAGGAGAAAGAAGAATATGAGGACAC TGAACAGTGAAGCACTGAACTCTATTAATTTACGATTTTGCCACTGTTCCCAATTCCTCTCTCCAACCCCAATTTCCTCA TTCCATGTTCCCTGTTCTCTGAAAAACCCAACCCCATCTGCTATTTCCTGCAAAAATCGAATCTTTTCTCCGGTTCAAGC TTCCATGGCTTCATCCACCACTGTCTCAGACACGGATACGAAGCCATTCTCCGTTCTCTTTGTGTGCTTGGGCAATATCT GCAGGAGCCCAGCTGCTGAAGGAGTCTTCACTGACTTGGTCAAGAAAAAGGGTCTCGATTCCAAGTTCAGAATCGATTCT GCTGGCACAATTGGTTACCACGAGGTGTGTATGTTGATAAGCATTCTCATATCAAGGAAAAGTTCATTTTGTTAGGGAAA AATCAAATTTTTCAGCTTTCTATGATGAAAAATGAAATTATGCTTTTGGAAATCCTTAGTTAATTCTAAAGCCAAAATCA ATTATGGCATGGGGAGAAGCTTATTTTACTAGTTTAAGGGTGACAGAATTGATTAAGTGCATGTTTGGAAATTCTTCTAT AATTGATTGTAGAGCCGGAATCAATTTTAGGAGAAGTTTTGGTGAGTAGCTTGTTTGTTTCATAATTGATTATGAGGAAA GAAAATGTGATCCAAACATGCTATTAAAGGAGCACATACAAACATGATCAACTTTGAAATGACAATGAAGCTGACCAAGA TGTGGGTGTGTCTATAATTATCCACATATCAATGTAATTATGTGAAGATGTTTTTTTTTTTATTATTAATTTATTATCAT GATTAACTTTATGGTGGATTGTTCAGATTGTTTAATAACAAGTAATATTTTTTGAATGTTGATAACTTTCAAAGGGCAAT GAAGCTGATCCAAGAATGAGGGCAGCCTCGAAAAGGCGTGGGATTCAGATAACTTCTATTTCAAGGCCAATCAAGCCCTC TGATTTCATTGACTTTGATCTCATTCTTGCCATGGACAAGCAAAACAGAGGTAGGCTCAAAGATAATGGAATATTTGTGC TGTGTGATGATTTAATATGAGCTTGGATGGCCTATTTATGGTTGTGTCACAATCCGTCGTTTTTGAGTTTTTGGTTTCCT ATGCTTAGTAATGGAGTTTGTTGTTTTTGCTTTAGAGGACATATTGGAGGCCTTCAATAGATGGAGATTTAGACAGACTT TACCGGAAGATGCACATAAAAAGGTGAGTACAATGTTTTGATCGTCTTTGAGCTTTCGTTTCATATGTAATTTATATTGT GACTGTGATGGTGCAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAACCGAAGTACCAGATCCTTACTATG GTGGACAACAAGGGTTTGAGAAGGTATGCTATTCATGTTAGGTTCTTGGTCGGCACTTGGTTCATTTTGGAGGTTGAAGT GTATCATATATATTCCAGTGCAAAGATAGTTCTGAATCAAGATACTATTTCGTTCAATAAATATAAATTAGATTGAGCAT TATACCGATATGTCTAGTGAATCAGTTTAGGGCTGGGGTTATGGTGTAGATGCTGTCATTCAAGCAAGTAATAGATGATT CCTAAACTGAAACCAATTATTCTTTGTTTGCGCTTTCGAAGATACACACTCTTGTGTGTAATGATTACATATAGTTAGGA GTAATGCTAGCAACACACTTTTTAATACATTCTATCATTGGTCCATTTTTTTAAAAACTCAACACACTTTTTAACAAGTG ATCAATTTAGGAGGCAAGTTTAAAAACTATATCAACCAGAGTGTTATAAATAGTGTTATCAAAAGAGTGTGTGTCACTTC CATTTATCAAATTCCGGTGCACATGTTTGTACTTGCGTATGTCATGGTTTTTGTTTAACCTTTTCTTACTCCACTTTCCT CTTAAATAACTGCAAAATTCTTATACAGAATGTCTGCTTCTAGACACCTTAAGTGAAAGCAATTTTGTATTTGCATCTTT TGGCACCTACAACCAACATGTCTCTCAGTGAATTAAAAAAATTACACTTTGCACTCAAGAACTCACTTCTTGATGATTCA ATCAGAGTAATGTATGTCTGCATTTTAGACATTCAACAATTGGCCGGTCACATGTCCGATCTCAAACAGTCAAACTGTCC ATGTTGAAGAGAACTCCTACATAATAAATATTGTCATATTGTTGTGAAGAAGAATTCTATGCCCTTTGTTAATACTCAGC TTGCTAATTATCACAATGTGGCATTGGCAGGTATTAGATTTGCTTGAAGATGCTTGCGATTCATTGCTGGAAAACATATT GGCAGAAAACAAACATATACAAGAATCTTAATGCCTTTTTAAACAGCAAGAAGATCCAATCCTGGGGCTCACTATCCTAA ATCCATGATTTCTATACTGTAGAAGCTTCTTACCATACTTTTCTCAGAATTTGAGTTATAAATGCAATTTTTCTTTCTTT TTTATCTTCTTCTGTCTATCAAATTATATTGTGAGACTCAGCAAATTACAGCATAGGTAAGATTTTGTTGACTCTATTGG CATGCACATGTTCTTTTACTGGTGAGAAGAATTGCTTTAATCGCCAAGGTCTTTTCAAATTCAAGTGGGCATATTCTTAG TCGTAAGTTGTAACATACAATCTTCTGCATTGTACTGGACCCAACAGTTCAGATTTCATTAAGTGGAATGAACAATTTTC CCAATATGCCTGTTAATCATATTTTAACAACAAATTCACAGTACAAAATGCTGGCCACCTAGTGGCATTTGAGCTGGCTG CCCAAGACGAACTCCCGCTATCTCAGTAATTTTTTTGCCCACACCATCATCCACTCAG
CDS sequence (LotjaGi3g1v0479700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGACACTGAACAGTGAAGCACTGAACTCTATTAATTTACGATTTTGCCACTGTTCCCAATTCCTCTCTCCAACCCC AATTTCCTCATTCCATGTTCCCTGTTCTCTGAAAAACCCAACCCCATCTGCTATTTCCTGCAAAAATCGAATCTTTTCTC CGGTTCAAGCTTCCATGGCTTCATCCACCACTGTCTCAGACACGGATACGAAGCCATTCTCCGTTCTCTTTGTGTGCTTG GGCAATATCTGCAGGAGCCCAGCTGCTGAAGGAGTCTTCACTGACTTGGTCAAGAAAAAGGGTCTCGATTCCAAGTTCAG AATCGATTCTGCTGGCACAATTGGTTACCACGAGGGCAATGAAGCTGATCCAAGAATGAGGGCAGCCTCGAAAAGGCGTG GGATTCAGATAACTTCTATTTCAAGGCCAATCAAGCCCTCTGATTTCATTGACTTTGATCTCATTCTTGCCATGGACAAG CAAAACAGAGAGGACATATTGGAGGCCTTCAATAGATGGAGATTTAGACAGACTTTACCGGAAGATGCACATAAAAAGGT TAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAACCGAAGTACCAGATCCTTACTATGGTGGACAACAAGGGTTTG AGAAGGTATTAGATTTGCTTGAAGATGCTTGCGATTCATTGCTGGAAAACATATTGGCAGAAAACAAACATATACAAGAA TCTTAA
Protein sequence (LotjaGi3g1v0479700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTLNSEALNSINLRFCHCSQFLSPTPISSFHVPCSLKNPTPSAISCKNRIFSPVQASMASSTTVSDTDTKPFSVLFVCL GNICRSPAAEGVFTDLVKKKGLDSKFRIDSAGTIGYHEGNEADPRMRAASKRRGIQITSISRPIKPSDFIDFDLILAMDK QNREDILEAFNRWRFRQTLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGQQGFEKVLDLLEDACDSLLENILAENKHIQE S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 237 | 233 | 1.3E-113 | – | |
| Gene3D | 55 | 237 | 183 | 3.4E-62 | – | |
| SUPERFAMILY | 71 | 231 | 161 | 5.23E-49 | ||
| SMART | 73 | 230 | 158 | 2.7E-46 | ||
| CDD | 74 | 229 | 156 | 3.49356E-73 | – | |
| PRINTS | 75 | 92 | 18 | 1.2E-15 | ||
| Pfam | 75 | 228 | 154 | 4.6E-40 | ||
| PRINTS | 118 | 134 | 17 | 1.2E-15 | ||
| PRINTS | 202 | 217 | 16 | 1.2E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein tyrosine phosphatase activity | Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
Expression pattern of LotjaGi3g1v0479700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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