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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0484600 |
| Transcript ID | LotjaGi3g1v0484600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I3S460|I3S460_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0484600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90194505..90196133) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTATTTCATGTTGCCTGTATATCTCATAATTGGTTTGAATTATTTTTTGCAGTACGGAACGTTTGAGATGATTCCTG AGTTTCCTAATTTAACACATTTGGTCTTCACCTTTGTGGACAGCTGGGATTTCCTGCTTGAGATGCTCAAAAATTGCCCC AAGCTTCAGGATCTTGAACTTATTTTCCGTGGGTATCCCAAGGGTGGCCCTATTAGTTACCCTCATTTTGTTCCTCAATG TCTTACTTCACACTTTACAAAGTGCTATCTTAAGGATTGTTGTGCGACAGAAAGTGAGCTGCGATTTGCAAAATATGTCA TGCAGAAATCAACAACTTTACAGACCATGACAATTTGCTGCACGCAATATTTATGTCTACGGTTAAAATGTAAAATGTTC GAAGAATTAGCTTCATGCCCAAGGATATCTTCATTGTGTGAACTTTTATTTGTATGATTTTTTAGGTCTCTTGGTATCTG CATTTTGTTATGCAACTTCTGATTTTGAAGAATCCAGTTCTGACACATGACCAACGGATGTGAGGGCTTAAATTGATGTA ATGTTATTTCATATTTTGGTGAAGTATTGTGCTCACTCTCTGTCCAAAAAGATTATCCTTCTTCTCTTTAGGTTGTGTAT GTTTTGGTCCTTGTAAAAAAAACTGAGTTTGAGGTCAGTATTCATATTTGCTTGAACCATATTTTTGCATTTTTCTTTCC TGTGTTGCTTCATGTTTGGTTGCCTAGGGACTGCAACTTCAATTTGAAATTATTGTTATTTTGTGTTTCTTGTGTCATCA TCTCCTTCAATTCTGTCAGGGTTAATGGTTTTTTTCTTTACTTCGGTTTATCTGTGGCTGCATAAACTTAATTTGTCGGT ATTTTAATCACCGGATGTCGTGAGATTGTTTGTTCAGATCAGATCTTTAATGCACGGACATGATGATATGTGTTTGTGAC AAGATTCAGGTTGTGATTTGGTTTCAGGTTTGATTTGTATTTTCGGGAGAATCCCTTTGGAAATTATTATTGTACTGTTT TTTTGCTGGTTCGGAAGATCTATGTATTCCAAGGAGTGAGTTAATTTCTCAGATAAATCATTGTCCGCAGATCTATATTT TTCATTGTTTGTTCGCAGATCCCTTTGTTTTTCACTATTTTTCATTGTTTTGGCCCTATTTCGTAGATCCATAACAATTT CATTCCTTTTCTTATTTTTAATTACTAGTAGAAATGCTGTGGAGAAAACTTTAAAAGCTCTCTCTCTCCGTACATTATAT ATTGTTCTTCGCGGAACTGGAACTGGACTTGGATGTTCTTCGGGTCTTGGTGGCGGAGTGTGGCCAAAGTGGTGGCGATA GTGCGGTGATGCTGGTTGCAGGCGTTAGAGATACTTGTATAAGACATTTCGACGCTCTAGTCAGTGTGGCCAATTTTTTT GTTTAGAGATGTGATTGTTTTAATTTACCCAATGACTGAATAACCACGTCTTAGGTAAATCATAACATCGTCTTCATATA TACATTTAAATAAAATGTTGGTGTAATTTTCAATATATTTATATCTCAATCACATTGCTTCACTGAGGATTGACGATTTA ACTAGTTGGGGTAACACTCCAAACCATTT
CDS sequence (LotjaGi3g1v0484600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCCTGTATATCTCATAATTGGTTTGAATTATTTTTTGCAGTACGGAACGTTTGAGATGATTCCTGAGTTTCCTAA TTTAACACATTTGGTCTTCACCTTTGTGGACAGCTGGGATTTCCTGCTTGAGATGCTCAAAAATTGCCCCAAGCTTCAGG ATCTTGAACTTATTTTCCGTGGGTATCCCAAGGGTGGCCCTATTAGTTACCCTCATTTTGTTCCTCAATGTCTTACTTCA CACTTTACAAAGTGCTATCTTAAGGATTGTTGTGCGACAGAAAGTGAGCTGCGATTTGCAAAATATGTCATGCAGAAATC AACAACTTTACAGACCATGACAATTTGCTGCACGCAATATTTATGTCTACGGTTAAAATGTAAAATGTTCGAAGAATTAG CTTCATGCCCAAGGATATCTTCATTGTGTGAACTTTTATTTGTATGA
Protein sequence (LotjaGi3g1v0484600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPVYLIIGLNYFLQYGTFEMIPEFPNLTHLVFTFVDSWDFLLEMLKNCPKLQDLELIFRGYPKGGPISYPHFVPQCLTS HFTKCYLKDCCATESELRFAKYVMQKSTTLQTMTICCTQYLCLRLKCKMFEELASCPRISSLCELLFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 146 | 142 | 2.8E-7 | ||
| PANTHER | 17 | 140 | 124 | 3.8E-22 | – | |
| PANTHER | 17 | 140 | 124 | 3.8E-22 | – | |
| SUPERFAMILY | 20 | 139 | 120 | 3.53E-5 | – | |
| Pfam | 71 | 115 | 45 | 1.3E-10 | ||
| SMART | 76 | 148 | 73 | 0.0024 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0484600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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