Transcript — View — Lotus Base

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LotjaGi3g1v0485200.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0485200
Transcript ID	LotjaGi3g1v0485200.1
Lotus japonicus genome version	Gifu v1.2
Description	DUF1635 family protein; TAIR: AT5G22930.1 enabled-like protein (DUF1635); Swiss-Prot: sp\|Q8IDX6\|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a; TrEMBL-Plants: tr\|A0A0B2QMG7\|A0A0B2QMG7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0485200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:90236563..90238960) extracted from Lotus japonicus Gifu genome v1.2.

ATATTGCAAATGAGACATGTTATTATTGGATAGAGTCAGACCATAGAGTCTTGTAGATTGTAGAACATAGGGAGGGAACG TAGGATTTGGCCACAGTTTGCCTTTTGGCTTTTTCTGTGCTTTTTTCTAACCCCCCGTTCAGAAGGCAAACACACACAAG AACCTACAGTAACTTGGACTCCTTCTTATAAAACACCTTCAATCGTTCCCCAATCACCCTCTAACTCTGTCTCTCCTCTT CATTTTCCCCATTCTTCAGCCCCCATTTCCTTCTTTCTCTTTCTCTCTTCCATTCTTCTATTTTGAGAATCAGCAACATG GACAATCAACTTCAACGCAACCCTCTTCTAACTTGGGCTTACTTCTGCCAGGGAAAGGTACCCCTTCATTTCTTTTCACT GTTTACCAACATTTTTGCTATGTAGTTGCTTGTTTGAGCCCTGAAAATGTGTATTTTCCTTAATGGGGTGATACCATTTG GAATTTTGAGGACTAATTCTTCTTCTTTGGTTTTTGCTATGTAGTTAGTTGCATGTTTTAGCCTTAAACATGTTTACTTT TCTTAATGGGGTTATACCATTTGGAATTTGAGGACTAATTCTTCTTTTCTGTAATTTTTGTTGACACAGTCAATGGAGGA GCTGAAGCAAACCCTCATGTACACTACTCTGGAGCTTGAACAAACAAGAACAGTAGTTCAAGATGAGCTGAGAAAGAGGG ATGAACAGGTTCTTACCCTGAAGGAGCTTCTCAACAGAGTCATGAGAGAAAGAGATGAAGCACAAGAGAAATGCCAGAGA CTTCTCTTGGAAAAGCTAGTTTTCCAAAAACAGCAACAACTATCTGGAATTTCCAGCATTGAAGATGACCCCAGGAGAGG AATTGACTCCAACAATGGCCTTTCATCATCAGATTGTGAAGAAAGCATTGTTTCCTCTCCAGTTATTGACCATTTTCACC AATTGCCACCACCACCGCCGCAGCCGCAGCCGCAGCCATTGCCCTCCATGACAGAGTTGATATCACCAGATAAGCCTTTA CCAGAGAAGGGAAAGCTCTTACAAGCAGTGATGAAAGCAGGTCCTCTGCTTCAGACTCTGCTCCTTGCAGGACCACTTCC TCAGTGGAGACACCCGCCACCGCCACTGGAATCCTTTGAGATCCCTCCGGTGACCATTCCTTCACCGCAGCCGCAGCTCC TCCACCAAGATTCCTTTAACACTAACGGGAGCACTGGCGGCACCGGCACCGGCACCGGCACCGGCACCGCCACCGCCACC AACTGTGGAAGGTTCAGCAGAAAAAGAGTACTCTGTGATGGATCTGATTCCCCTGCAGAAACCAAGTACCAGAGGATTGT ACTCCACTGACTAGACTATTACTAAGTCAGATTTATCATTCACCCACTTAGTTTTTTTAATTTCTATATATAGATATGAT TACAGTGGTTTTTACCCACTTAGTTTATAGGATTAAAGGTTAGGAATAGCAAGGTGGTCTTTAATTTATATATGTACAGT GGTTTGTTCAAGAGCAGAAGCAACCAGGATTTAACTCAGCAGGAACAAGATGAGATGAAAATGCTTGATTTTGGCTTTCT GGGAATGTTGTTGGAGTGAAGAAAATGCTTAGGGTATGTTTGGATACTAATTAGCATTATGCCAACCGGTGTTAGCACTC ATTTCAAAGCAGAATCACTTCGAAGCAAAAGTGACTAGAACTCAACTGGTGGATTGAGATGAAAGTGTTTTTGCGTTAAC TCAACTAGTATGGTGGATTGAGATGAAAGTGATTTTGCGTTAACTCAATTGATATGCAGACGACAGACGTTCCCTTATTC ACATTCTACTTTTGTTTGGTGTGAAGGGAAAAAGGGTCACTGAAATTGTAATTGTAATGTAACTAAGTAACTGTAGTTCA TCAAGTGATTTGAGGTGTGTGAGATTGATTTTGAAGATCACAAGAACAGTTAAGAGGATAGGTGATTGGGTGGTGTAGTC GTTGGGGTAGGGAGATGGTGTGGCCAACAACCAAACGGGTAAAAGCCTTGAGCTTTGAGTGTAGGGTTGAGTGGACCCAC AAATCGGAATCAGGATCTATTGCTGGTGTGATGTATGATTATATTAAGCTTTTGTTGTTAGACAAGTTATCATTAATCAA TTTTTAGTTTGTTCTTCTCTTTTTGCAATACTAATTCACTGAACTAAAGCCTCTTTTTTTGCATCTGCTCCCACTCAATC TGCTTGTGATTCCACTATGAGCGCGCCAAAAAATTGCTTCCTTTTCAAGAGGGGAGAAGAGCAGAAAAAATTGACCAATG TATACCTATCATGTTCCATTAAAGCATGGCAATGAAAGGAAAAATCATGGACTCTACCAACAAATGAAGCATGCTATT

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0485200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACAATCAACTTCAACGCAACCCTCTTCTAACTTGGGCTTACTTCTGCCAGGGAAAGTCAATGGAGGAGCTGAAGCA AACCCTCATGTACACTACTCTGGAGCTTGAACAAACAAGAACAGTAGTTCAAGATGAGCTGAGAAAGAGGGATGAACAGG TTCTTACCCTGAAGGAGCTTCTCAACAGAGTCATGAGAGAAAGAGATGAAGCACAAGAGAAATGCCAGAGACTTCTCTTG GAAAAGCTAGTTTTCCAAAAACAGCAACAACTATCTGGAATTTCCAGCATTGAAGATGACCCCAGGAGAGGAATTGACTC CAACAATGGCCTTTCATCATCAGATTGTGAAGAAAGCATTGTTTCCTCTCCAGTTATTGACCATTTTCACCAATTGCCAC CACCACCGCCGCAGCCGCAGCCGCAGCCATTGCCCTCCATGACAGAGTTGATATCACCAGATAAGCCTTTACCAGAGAAG GGAAAGCTCTTACAAGCAGTGATGAAAGCAGGTCCTCTGCTTCAGACTCTGCTCCTTGCAGGACCACTTCCTCAGTGGAG ACACCCGCCACCGCCACTGGAATCCTTTGAGATCCCTCCGGTGACCATTCCTTCACCGCAGCCGCAGCTCCTCCACCAAG ATTCCTTTAACACTAACGGGAGCACTGGCGGCACCGGCACCGGCACCGGCACCGGCACCGCCACCGCCACCAACTGTGGA AGGTTCAGCAGAAAAAGAGTACTCTGTGATGGATCTGATTCCCCTGCAGAAACCAAGTACCAGAGGATTGTACTCCACTG A

Download CDS Sequence

Protein sequence (LotjaGi3g1v0485200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDNQLQRNPLLTWAYFCQGKSMEELKQTLMYTTLELEQTRTVVQDELRKRDEQVLTLKELLNRVMRERDEAQEKCQRLLL EKLVFQKQQQLSGISSIEDDPRRGIDSNNGLSSSDCEESIVSSPVIDHFHQLPPPPPQPQPQPLPSMTELISPDKPLPEK GKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFEIPPVTIPSPQPQLLHQDSFNTNGSTGGTGTGTGTGTATATNCG RFSRKRVLCDGSDSPAETKYQRIVLH

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33431:SF3 View details on PTHR33431:SF3 Search for proteins/transripts with this domain View external data on PTHR33431:SF3	1	266	266	7.0E-116	–
PANTHER	PTHR33431 View details on PTHR33431 Search for proteins/transripts with this domain View external data on PTHR33431	1	266	266	7.0E-116	IPR012862 Show description in modal box View details on IPR012862 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07795 View details on PF07795 Search for proteins/transripts with this domain View external data on PF07795	20	263	244	4.8E-90	IPR012862 Show description in modal box View details on IPR012862 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	54	81	28	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	95	150	56	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	106	120	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	129	146	18	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	215	237	23	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0485200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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