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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0485400 |
Transcript ID | LotjaGi3g1v0485400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Actin-related protein 2/3 complex subunit 1B; TAIR: AT2G28130.1 actin protein 2/3 complex subunit-like protein; Swiss-Prot: sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B; TrEMBL-Plants: tr|K7LTP1|K7LTP1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0485400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90267407..90274970) extracted from Lotus japonicus Gifu genome v1.2.
CTAATATCATATTTTATTAATATTAAACCTGATAAAAATAAAAAATGTGTTATGAATAGAGTAGGTTAGTAAAATGTTGA GATTATTTTATTGTATTCTAGCCCTTTGTATTCTACTCCATCACTAGCTAGCTGCCCAGTCATGTGATAAGGCTTGCGCA TGTCTCGAGATTGAGATACACAGCTTTCCTTTACAATTTAATCAAATAAACAATAGAAAAGATCAAACTATCTACTAGAT AAGAGAGAAAGAAAAAGTAGAGAAAGAAGAGGAAGAGTGGAGAATGGGGAAGATGACGACTATAGTTGCATGTTCTCGGT GGGGGTTTTTTGCGCTGTAGAAAAGAAGGGCCACTGAGTTGCACCTTCACTAGTGGCAATGATGCCCACAATCACAAACA CCAGCAAAATCCCAATTGAAGCTCGAGTCACGGCCTCACCCACCCACGCCAGCACAAATGCACAATCGAGAACAGACTGA GTTCAGAGAATCAGAGTCAGAGGACAGAGATTAAGAAGTTTTACCTCCTTCTGCTTAGTGGAGGGAGCAATTGAACAATG GGTGAACAGAGTTACAGAGGTGAAGCCGTGCGTGAAGTAAAAACTAGGGTATCAGAATTTTGTTTTTATGAAGTAGTCCC TGAATTTTTCCCTTACCTTTACATTTGCCCTTTTTCTTTTTTTTTGGGGCCCAAATTATGATCTGGGCCAAACAAAAAAT TATTCTTTTGGGCCAGAGCCTGGGCACAGGCCTGGGGTGGCCAGGCGGTACATCCGCCTCTGGTTTGACACTTTGATTGG GGCATTTTTGTACAAGGAGCATAATAGAAATTATTAATTCTATGGGGCCTGAATTGCAAATTGATATTTTCCCTCCAAAA ACAGAGTGCAGCTTTCAATATAGGTTGAGGTTCATCCCTTTGGCGCTTTTTGGAAACCTAAGCTTTCGTTTGATGAACAT GGACGACCCTCTGGATTTCGAGGTTGAAGACGAACTTCTCAAACCCCTTCCAATCAACAAAAAAAGGTACTCATTCTGTT CCCTCTATCTTCTTTTACCCCAAACTCTTCCAACTTTCGATTTTTTCTCATTGGGTTTTAGGGTTTATAGTTTCCCAAAC TGCAACTTTTATGCCCAATTCTTGATTTTTCATTATCTGGGTTTTCCTCAAAGATGGCGCTCTAAGTATTAAAAAATTGA AATTTATGTTATTCAGGAAGAAAGCTATAGGGTTGGATGATCTTCTCCAAGATCACTACAATGAACAGGACAAGCTTTTA GAGAAGCAGGTAAAGCAGGCAAAGAAGGGAAAGACAAAGAAAGTTAAGTCTTCGTACGATGATGAAGATCGCCAGGAAGC TTTGGTGACTAGGCTAGTTGAAAAATGTCACAATCAGGCACTAATTTTGCTCTTCCTGTTCTTATCTTTATATATGGTTT CAATTTTTTTTTTTATTGGAGTTTACATTGTCTGTTACTGATTATTCATGGTTTAATGTCCAGTTGCAAGCTTTTGGCGA CGAACCGGAAATTCCAGTTTGGGGGGTAACAGTTTTTGGTGAAAAGGTTATTATTAAGTTCAATGCTTAATCATTCTCTT AATGTGGTTTCATTTTTTTTTATCTTTTGACTGGTTAGATAGTTGGGGATTAGTTATGTTTTCATTTTGTGAACTGCAGA AAGCCTTCCCCCCTCTGGACTTTCCTGATCTTGGAAGTTGTAACATTTTTCAGTCTTTTTTGAACAACAAGCTAAATTCA GTGGTGGAATTGGCTGCGGACAAAGGTTACTCAGATGTTTCTTTTCCTGTTAAAGTTATAGTGTTCTCTCTCTTATCAAT TCGTAATATCTATAAACCATCTTCTTTTAGCACTGCAAAGTAATGAAGCAGATTTCATTTACATCAAGAAACTGCTTATA TATAGGGACGGAACCAGGGTGACAGAAAAAGGGGAAGTTGCTCCTCTCCCCTGCTGAATAGTGAAAATTACCTTAATAGA ATAGAATTTTAAGTTTATATTTGCCCCTCCTTAAAATTTTTATTCTACCTCCTCCAAGTAGTCATTAACTTTGCCTCATA TGTTTAATTTTCGCCCTCGTTGCCAACTTATTCTGGTTCCATCCCATCTTGTATGAAGTATGTGCTGTCACATGAACCTG AGATGCCTCAGTTAATACTCTATTTTTCAGGAGATATCTTTTTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAGATTA GCTTTCCTCTGTGGTCATATAGAAAAACCAGTAGCCATTTGGGCCTTCAATACAAGTGAGTGAAAGCTTGTCTTGTTTCA TGTTTATATTGTTACTAGCTATAAGATTTTTTTATGCTTATAGTCATACATCTGTATTACTTTGTTCTTTCAGTGTTATA TTCATCTAAAGTAGAGCTCCTAAACTCTTCCTGTGACTTCTGGTGTGCAATTCTCTCCTCTGGAAAGGAGGTAAGTTTGT TTGTTATGTTTACTTTGGGCAATATATCTTTGATAAAAATGACGAGTTGGTATTTTATTTTGAATTTGATGCCTTTTTTC TTGATTGATGTTATATCCTTATGATTAACATTCATTCTTTACAGGTTGATCAATTTCCTGTCAAAATTGATTGGTTTCCT CAGTTCACTGATTTGAGAAGAGCTCTTGACATTTACGGGTTTCTATTTAAGTTTTCATCCAGTGCTGAGGATATCATTTT AGGTAACTCTCATATCTATACTAGTTTATCTATACAATGTGGGAGACAAATTGTCTTTGTGTAAGAAACGTGAATTAGTT TTAGCAATGTAGAGCTGAAGTTAATAGAAGAAGATAACGCAGGAAAGTAAAATATATTCTTAATGTGAAATGATTTCATT AGATTGAAAGAGAGAGTACATTAGTTATTTATAGAAGCTAGACTATGTGGTTTTATAATAACCACTGAACATAATTAAAG CTAATACAATAACAAACACTGTAACTGTTTAATTGAAGTGTAACCAACTAGAGTTGCAGGTAATCACTAATATATAAGTA ACTCTGTCCGAGTATTTTATCCAAAACACTTCCTGAGGAAGAATAAGTCCAACTCCATATGTGTTGTTCTTGAGTGAAGA ATGGGATTATGAGCCAAAGCATTTGAACTTGGATTATCACAATAGAGAATGAGGGGCTGATATGAAAATCGTAGTTCTGT GAGAAGAGATTGGATCCATAGCAACTCAGAAGCAGTGTGTTATACACTTATACTACAATATTTTTCCTCAGTGCTGGAGT GAGCTACAAGATTTTGTTTCTTTGACCACCAAGAAACCAAGCTAGGACCAAAATAGATGCAAGAACCTTAGACTGGACAT TTGTCATCCACATCTGTCGCCCAATCTGCAACCACTGAATGCAGTAAGAAGAAAACGTTGATAGATATTGGCTGTCTGAA ATAAGAGACAATGATTCATAGTTCCTTTGAGATACCTCAGAACGTGTTTGACAGCTCACCAATGTTCTTCTAGTGGCTAA GATAAATTCTACACACTTTGTTGACTGGAAAACTAATTTCAGGACTAGTAATCGTCACATACTGTAGAGAGACCCCACTA TAGATCGAAAAAGAGTAGGATCCTTCACATAATTGGCCCCATACTTTGAACTGAGAAATAAGCTGCTGAATAGCCGTAGG ATAACTGCCTGTGACAATTTTGTCATCAACATAGATCAAAACAAATAAGCAGTGTTTAGCACCATGAAGATAAAGTAATG AGGGGTCACATCTACTAGCTTTGAACCCAAAAGTCAACAAAGTAGAGTAAGGCGTTCAAGCCAAGCCCGTGGAGCCTGTT TAAGGCCGTAAAGAGCCTTTAAAAATTTATAATCAGGAAAGTGTTTATGAAGAACATTAATAAGGAGATTGAGAGTGAAG AATAAAGGTAGGCATTCAGTTCATTAGGTATGCAGTTGAGGTGTAAACGGGCATGAGAGAGGAGAATAAGACCAGATTCT ACTAGATTCCTATGGTTCCTTTCTACAGAACCATTTTGGTGATGTGTGTGTGGGCAAGTGAGCCTGTGAAGAAGAGGTAT GAAAGGATTCTCTGAACTTGGGGAGGTCATGAATGGACCTCATAAGAAGCTCATGATACCATAATAGAAGAAGAGAACGC AGGAAAGTAAAATATATTCTGAATGAGAAATTATTTCATTAGATTGGAAGAGAGAGTAGTTATTTATAGAAGCTAGTCTA TGCAGTTTTATGATAACCACTAAACAGAATTGAAGCTAATAAAATAGCAGAATTATAACAAACACTGACTGTTTAACTGA AAATTAACTAACACTTAACTGAAGTGTATCTAACTAGAGTTACACGTATGCACTTATAGAAGTATTTCTATATTTTCATT ATATATCCATTTCATGAGTGACTATTATTTCTTTCTCCATTGCAATTAATGTAGGCATGTTTGCATTACTCAATGTGAAA GTGCAATTATCTTGCCATACTTTTAACCATGCTTCTAAGAAAAATGTATATATTTCTCTTTTAGATTCTGAAATGGGAGG ACCACCTCAAAATATTAGAGCTTGGATCAGATTTGTCACTGCCTGTTGTCTGATAAGGTATGCAACAGCAGGAAGTCTAT TTAGAGTATAACATAAATTATGTATCCGTTCTTTGTTTCTTTCGTTAGGTATTATTTTAAGTTTTAGGTATCATATATTA GATTGCCTGTTGATAATTCAAATGACAATATTTTGAAAGTATGATCTTGCCAACTCACACCTCTTGATTCTCGTGATAGG ACTAAAAGAGCTATCTTCTCCACTGTAGAAGCTGAAGAGATAGTTGAAATAATTATATGTCTATTACTAGATCGCCAGTT CCAGGGTTTGTTGGTGCTTTTGAATGACTGCATGCAAGCAATTGTCAATTACTTCACAGACCAAGAATGGCACTCAAGTT GTGAAAACATAGCTAAATTCATTGCTTGCAGGTTATTACTTTTATTAATTTTTTTTGCTATATATTGGTAACAGAATATA AACTTTTTCCTGTTAATAATATTGCCTTTGACATCTTAACGATCACACTCATATTCCAGCATAAAAACAGGGTAATGTAT CTTGTGGCTATAATTTCTGTGCATGTTTGCTCCTGGGTTAATGATGGGTACCAGTAGTGAAAGAGAAGAAAATGACTATT ATTCAAGAATAGAAATGAACTAAAATTGCTAGTTATTTGAGAGAACCAGCACTCTCCCTCTTAGAATTCCCTGATACAAT ATAGATGACTCCCAATGAGTCCCCTTCCCCCTTTTTATACTCTACTAACCTATAGTTAACAACCTATGATTATAAGAGCA ACTTCTATCACTCCATAATTGTCACTCTTATGTTCCTATTACTTAATGAATGATAAAACTTATCAGAGGATTTTGTTATG AACTGCGAAGATAATATAATATTGCAATTTTTTTGGATCATTCCACAAGAATGATCTCTTCATAATTTCATAGAGTCCTT GGCAAGAAGAGCAATTGGCAGTAGTTTTTGAAGGAGAGTTCTTTTGATTTGGTTGTAAATTGTGATTATTGTATGATGAA GGCAATGGGATGCCCTGGTGATGCTTCAGTGCTAATGATGAAAAATATATCTGGAATCCAAAATTGTGTATGCTTAGTTA TTAAAACCCTATATTTTGGTACATTCTCAAGTTCGTCATACCTTTATCATTAGTGAAATTAGTTGCCAAAACTATTTGCT TTGTAAATGAACAAGTTGAACTGTATGTTGATAATTATTTTCTAGATGTTGTCCATAGGCTGTCTTTGCTTCCCCTCTCT TATTTTTACTCTCTTGGATGTGCAGAGTCTCAAAGGATTTGAATTGCATCCAGGCTGTTGAATGTATTTCAGAAGCTAGT TCTCGTTGTAAGCAACTTAGGTGTGCTGTTGCTTATCAAAGCCTGCTTTCTTGTTTTGATGAAGTATGGTTTTTACCCTT CTCCCATCAAGTTTATTTATGCTAGCGCATATAAGAAGTATAATCAAAAGTTTCATGCAATTTATTCTTCAGCGCTTTTT TCATTAATCCAATGTTTTGGTACTACAAGCACCACTAAATCATGTATGATGCTGAAATTTTTACACCACTAAACTCTTTA AAACTGGCTCTTAATATTTATATATACATTTATTCAATGTATTATGTAATAATATAGAATATAGCCTTGCTTGATGTATA TTGCAATATAAAACCTGCAAAATGTGCAAATGACTTCAAGTGTTAGACTTTACTCTCAATAACAAAGAAAATTCTGTCAA ATAAGTTAGAAATGAACACTGCCAAATTAATTGCAGTAGTAATCTTAGAAATGTGGTTATAGATTTGCTTTGTAACTTTT TGAAAGTCAGATTTTTACGTTTTTCCTCAGGCCAACTGTGGAGAAGAGGTCCTGGAATCACTTACTATGATTAACTTCAA AGCCAAAAGTTGTGATTTCTTCAAGATGTACATTCACTTAGTTTTGACAGAAAATTGGGTTTTGTCCACCTCATTAGTTG GAGACAATCCAGTAATCGACGAGAGGTTCTGTCAATTTCTTAAACATTGTTCTAGCTTAATTTCAGCCACAGACCTACGA TCTTATGCAGCGAAGGTGAATGCAAGAGCTTTTTGTTTTTAACCAGTTATTTGATGATTACAGTGTGATTTCATGAAGGG AAATAATTTTGTTTTGCAGGTTCGTCATAGGGCTGCATATCTTTTGCACATCTCCATCTTAAATTGATTGGTTTCAGGTA TCTTCAGTATCCAATCCCTAATAGTACCTCATGTATTCTTTCTCCAACCAGAAAATAGAAAAAATAGGAATGAAATGAAT ATATATTCACATACTGGGCACTTTACTTGCAGGGAAGATTGATTGCATTCAAAGAATAGAGAATCAGATAAATCAAGTAT TCTTTCACATTATTCTTGTGTAGCCTGAGATGGTCAGATTTTAATGGGGGAAAGGTTAAGGAATGATGCCTTGAGTAGGC ACCTATGACTATGTATCTTATTTTGACTAAATACCAGATTCTTAAGACTCCAAGAATACATTCCTTTCCTGAAGCTTGAG ATGTTTTGAAGCCATTCTAATAGCAAAGATGCATGGTGAATGTTGACTCTTTTTGCTACTTGTTGGATACTCATCCTAGT GTACATTTCAAGGGGTACCTTATGTTAAATATCCTTAGGTTAAGGGTCCTAGTGCACATTTTGTTAAAAATCCAAGTGCA ACTTATCTTTCTGAAGCTATACCTCTGCAATTTTATAGCAACCAAGGTCATCAGACTAGTTACTTTGGTTTAGTTGTCGA GCATTACTGGGATTATCTTTGATTAGGCAGTCTGCAAAGAGAAACTTCTTATACTTAGTTTTTATTACGAGTTTAAGAAC TTTACACCGACTTCAGACCCAAAAAAAGACAAAAAGATTTATACACCGACTGTTCAAATAAGTTTTGCTAATGATCCTAT AACTTGTTGAGTGATAACATTTTGAAATTGTAAATGAATCCTGC
CDS sequence (LotjaGi3g1v0485400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACATGGACGACCCTCTGGATTTCGAGGTTGAAGACGAACTTCTCAAACCCCTTCCAATCAACAAAAAAAGGAAGAA AGCTATAGGGTTGGATGATCTTCTCCAAGATCACTACAATGAACAGGACAAGCTTTTAGAGAAGCAGGTAAAGCAGGCAA AGAAGGGAAAGACAAAGAAAGTTAAGTCTTCGTACGATGATGAAGATCGCCAGGAAGCTTTGGTGACTAGGCTAGTTGAA AAATGTCACAATCAGTTGCAAGCTTTTGGCGACGAACCGGAAATTCCAGTTTGGGGGGTAACAGTTTTTGGTGAAAAGAA AGCCTTCCCCCCTCTGGACTTTCCTGATCTTGGAAGTTGTAACATTTTTCAGTCTTTTTTGAACAACAAGCTAAATTCAG TGGTGGAATTGGCTGCGGACAAAGGAGATATCTTTTTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAGATTAGCTTTC CTCTGTGGTCATATAGAAAAACCAGTAGCCATTTGGGCCTTCAATACAATGTTATATTCATCTAAAGTAGAGCTCCTAAA CTCTTCCTGTGACTTCTGGTGTGCAATTCTCTCCTCTGGAAAGGAGGTTGATCAATTTCCTGTCAAAATTGATTGGTTTC CTCAGTTCACTGATTTGAGAAGAGCTCTTGACATTTACGGGTTTCTATTTAAGTTTTCATCCAGTGCTGAGGATATCATT TTAGATTCTGAAATGGGAGGACCACCTCAAAATATTAGAGCTTGGATCAGATTTGTCACTGCCTGTTGTCTGATAAGGAC TAAAAGAGCTATCTTCTCCACTGTAGAAGCTGAAGAGATAGTTGAAATAATTATATGTCTATTACTAGATCGCCAGTTCC AGGGTTTGTTGGTGCTTTTGAATGACTGCATGCAAGCAATTGTCAATTACTTCACAGACCAAGAATGGCACTCAAGTTGT GAAAACATAGCTAAATTCATTGCTTGCAGAGTCTCAAAGGATTTGAATTGCATCCAGGCTGTTGAATGTATTTCAGAAGC TAGTTCTCGTTGTAAGCAACTTAGGTGTGCTGTTGCTTATCAAAGCCTGCTTTCTTGTTTTGATGAAGCCAACTGTGGAG AAGAGGTCCTGGAATCACTTACTATGATTAACTTCAAAGCCAAAAGTTGTGATTTCTTCAAGATGTACATTCACTTAGTT TTGACAGAAAATTGGGTTTTGTCCACCTCATTAGTTGGAGACAATCCAGTAATCGACGAGAGGTTCTGTCAATTTCTTAA ACATTGTTCTAGCTTAATTTCAGCCACAGACCTACGATCTTATGCAGCGAAGGTTCGTCATAGGGCTGCATATCTTTTGC ACATCTCCATCTTAAATTGA
Protein sequence (LotjaGi3g1v0485400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNMDDPLDFEVEDELLKPLPINKKRKKAIGLDDLLQDHYNEQDKLLEKQVKQAKKGKTKKVKSSYDDEDRQEALVTRLVE KCHNQLQAFGDEPEIPVWGVTVFGEKKAFPPLDFPDLGSCNIFQSFLNNKLNSVVELAADKGDIFFEGLLVNGWLSRLAF LCGHIEKPVAIWAFNTMLYSSKVELLNSSCDFWCAILSSGKEVDQFPVKIDWFPQFTDLRRALDIYGFLFKFSSSAEDII LDSEMGGPPQNIRAWIRFVTACCLIRTKRAIFSTVEAEEIVEIIICLLLDRQFQGLLVLLNDCMQAIVNYFTDQEWHSSC ENIAKFIACRVSKDLNCIQAVECISEASSRCKQLRCAVAYQSLLSCFDEANCGEEVLESLTMINFKAKSCDFFKMYIHLV LTENWVLSTSLVGDNPVIDERFCQFLKHCSSLISATDLRSYAAKVRHRAAYLLHISILN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 457 | 457 | 3.2E-203 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0485400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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