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LotjaGi3g1v0494900.1

Overview

Field Value
Gene ID LotjaGi3g1v0494900
Transcript ID LotjaGi3g1v0494900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description FBD-associated F-box protein; TAIR: AT5G56420.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420; TrEMBL-Plants: tr|V7B6U0|V7B6U0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0494900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:91301884..91307389) extracted from Lotus japonicus Gifu genome v1.2.

GAGGTCGATGTGCAAGTGGGCTAGCTCTGAGCCAATTTATTTTATTTTTTTGACAAATTGAGGGCAAATAGTTCACATCT TTAATCGCACATTATGATAATTTCAAGCAAAATATATTGATAGAACATGCTATACAAAAACAAATTTTGACCACTTCCAA TCTGAAGACTCCCTTGCAAAATAGAGGCACCTCATACAAGGTGTGTGTGTCAGAGGGAGAAAAGGAGGCTCTTCATGTCC AACGCCTTGTCTTGTGAGACACAACAACTACATGAGGGGTTTTTTTTTTTAAAGAAATCAAACATATTGACTAAATAGAA GGTGGCATAGACGCCAATACATTAGCTGACACAAGCGGAACCAACACTGGCGAGACCTCCTCAATCCAGACAGGCCCTGG TAAAGAAGATGCATGCCTAGCCAGGAGGTCTGCAACCTTATTACCGGTACAAAGGACAAAGATAACAGAAACATAGTTAA TATGAGAAACTAAAATGTGACAATCCGCTAAAACAGTAGAAAAATAAGAAGCAACATCCACAAAGTTCTTCCATCCATTA TAAAGCTGAAGACAATCTGTCTCCAAGCAAACTGTCTGAAAACCAAGTTCGCTTGCCATGATCATAGCCCACCGTAATCC TTGTGTCTCTGCTAATTTTGGTGATAAGCATTGCACCAAATTTGATGTGGCTGCAGCAAGAACTTCACCTCTGTAGTTAC GTGCAACCAAAGGAAAATATGCACCTCCTCCTCCCTCTTGAACCGTGGCATCGACGTTAACCTTTTTTTTTTTGTCAATG ATAGTTATATTAAGCAAAGGCCCAAGGCCGAGCCCACAAAGGGAAGAAACAAGAGGCTGGAACACGTTAGCCAGCAAGAA AGATATTCTCCACTTGGTAAAAACAAAGGAAGCAAGTGGTCCCTCTAGACTTAGAAAAGCTAAATGCACATGGGAAGCAA CAGAGGCTTGAATTACTCCAACCACTTTTCCAAAGAAACAAGCGGCAATAATGCTGATGGGAAAGTACTTGTGCAATGGT CTTATCTCTTCCAAGAGGCCATGGACAATCAAGCAAAATCTGCAATTTCTTCAAGACCGGCAGAGACAAAGCTTGCTACC AAGATAGACTTCAACCAGGGATGACAAGGAAGGTCTAAAGGCAGTGAGAAGGAACATGTGTTCAGAATCCAACAGCAAGA TCTCCAACTCAGTAAGCCATTATTTGAAGCATCTTCAACAAGGCTCTCCGAAGCTCCCAACCAGTCACTCTGATGGCAAT AGGAGCAAAGGATGAGACCAGGGAGGAGTAACTAGAGGAGAGTGAGGCATCCCTGAAGACAAAAGAGCAGGTTGCAAGGC ATGGGCATGCAAGTCAGAGCCAAGAACAGAGAGAGCCTTGTTTAAACTCCATCAAGAGTTGTGGGCACTTGGGAAGCCAT TTCTGAGAGCTGCTGCTTTGGCATCCTCCACTAAGGCCCAACGAAGCTCCTGAGGGGGGCTAAACAACCAGTTATCCAAT AACTTGTTTTCCCTGCAAAGTTTTGCAACTTGGTGGGCAGAATTGTTCCTCTCTCTATTGGTCCATGCGAACTCACAGTC ATGAAATTGGCCTTTCAGGTATATGATATCTCGTAAAATTGCACTAGCTTCACCTATTAAAATCTCTGATCTGCATGCCT CCACTAATTGTTTATTATCTGATTCCAGCATCACATCTTGAAAATTGAGATTAAGGGCCAATATTAGTCCCTCCCTGATT GCTTGAGCCTCTGTTGTCAAAGGGGAAGAGGCAAACACCTTAGAACTTGAACCGGCAAGGAGGGTGGCAAATTTGTCTCG GATTACTGCTCCAACTGAGGCTCGAGGTAGGTTGATCACCTAGCTTGCATCCACATTTATTTTGAGGATGTCCCCGCGAG GGGGAACCCAGTCTGCAGCTCTTGAAGCTTGTTGTGTGTGGTTTTCCTTGATTATGTCTTCCTTGACAGGTTAACCTTGA TGGTGCCTTGCCCACATAATAAACAGCTATACATGTCAGTTGAATAAAGCGTGCAACATTCAGCCCATTTTGGATCGGGC CATAATATTATGTTTTCAAATTATTTTGGGCCTCTTCGGATATCAGTGTTCCTTGGGCTTTTCAGCCCATAGAAGCAAGT CACTAGTCTCAACCATAAACTATATAACCGTGGCTCACATCGCACCCAGACCCAAAACCCTAAGCTCGAACGGGGCTCCG CCACAGCCACCTTCCGCCACAGCCACCGCCATCCATTCCAGTGAACCCTAATTCACCTCTACGAGATTTCTCTGTTGATT TACGATGGACATGATTAGTAGGTTACCCGATGAAATCCTCTGTCACATTCTCTCTTTTCTCCGAACCCACGAAGCAGTTG CCACACCTCTTGTTTCAAAGATCTCCGTTCCCGCTCTCGACTTGGACCACTTCGAATTCCGTCGCGCAACCCGCAAAGGG TGGGTGGAGGAATCTCTGGATATCCCTTCCTTTGAGAACTTCGTAAACGCAACCATTCTCGCCAGAGACGAGCGACAACC CATCACAAGATTCTGACTCTTATATGAGTCGACTGTTAGCTTGGAAGGTTCTGATCTTGTCCATGATTGGTTAAACACTG TAATGCCACGCCGGATTGAGAACCTTGAAATCTGCATCCCCCCACTTTCTCGTGGTATTGGTTTGAAAATTTACAGCTGC AGAACCCTTGTTGTTCTCAAGTTGAAAGGGTATCCATTAGGTGTGTACGTTTCTTCTCATGTTGAGCTTCCCTCACTCAA ATCCCTACATTTGGAAAAGGTTCATTTCGTAGATTTTCAATCTTTTTTGAAGCTTATTTGTGGGTGTCCATTACTTGAGG ATTTGGAAGCAGGTACTGTTAGTTATTTGGATACAAGTTTTGATCAAGAGTTTAGATTTAGAAGCTTGCCCAAGTTGGTC AGTGTGGTTATAAATGATTATAATTTCAGGTTTCCCCTGAAAATAATCAGTAATGCAGAATTTCTAAGCATTGAAGAGGT TTGTATATATCCTGAAGATTATGTATTTGATTTCATTTTTGTAGAAAATCATATTCACACCTATATTTCTCATCATAGTT TGTCTTTATAACTTTTGCAGCGCACCTTCGGTAGGGTCACTAGGGTGTTTAATAGGGTGGTTCTTGAATTCCCTAATTTA GTTCATGTGGTATTCACCTCTTTGGGCTCTTTGAGCTGGCATTTCGTGTTTGAGATACTAAAAAATTGCCCCAAGCTCCA GGATTTTGAACTTATATTTAGTCGAGATCCTGACAGTATGACTCTTTTGCCTTACCCTCAATTTATTCCTGAATGTCTTA CTTCACAATTTAGAAACTGCACTCTTAAAAATTACAAAGGCACAAGATGTGAGCGGCTATTTGCACAAGACATTATGCAG CATTCAACATCTTTAAGGACCATGAAAATTTGTAGTAGGAGTTCCTTGAGTACAGAAGCAAAACATGAAATGCTTAAACA ATTAGCTTTATGTCCAAGGAGATCTGCCTTGTGTGAACTTTCATTCATATGATAACTGGTAGGTTTATTAGTGGCTGCAA ATTGTTCTTAGATTATTACATATGTTATTAATTAATCTAATGTTTGAAGAACATGGATGGATTTTGTGTAATTTTCTTGT CCAGTGCCCATATCTATCTGATTATTGTTTGGTAAATTCAGTTCTGGTACCAAACTTGGGTTTATAAATGGATAGTACTA TTTCTTATTTGGTGAAGTATTGTGCTCTGTCTCTCTATCTCTCTTCCAAAAGTTTATTTTTGCTCTTAAATGTATGTGTC CACTTAATTTGACCAAACATAAACGTTAAAAAAAAATATTTTCAACTAGAAAGGATTTTGACGTCAATGTCTACTACGCA GTTCATTCACTATAGTCATAGCAGCTTGTTAAGTGTTAACCATGGAATTGATGCTTGGGTAAGTGTACCTTATAACATAA TTGGCCACTGACTAAGAAGTTTGATATTAGTAGCTCATTTTCTCTGTGTGTAAAAACTGCACACTGGATATTCATTTTCT CTGTTTGCTTTGTGGGCATATTCATGGGATTCCTTATTTTTATTTGTTTGAAAAGAACTCCTTAGAATTTTCAGACACAA TTACACAACACATAGACTGAATTTACAACATACGCATGCAATTTGATTTTTGGACAAGAAAAGTTCCATATAATTCTTCT TCCACACTTGATCAAGTTATTATATAGAGAAAGGGAAGAGAAAAAGAAGCTGCAGCTTTGGGGTGAGTGAGAGAACCGGT GTTATAAAAACTGTAGACGATGTTGGCTGGGTGTTCTAGTTCGACATTGTCATTGAGGCACAGAATGAGGAGTGAAGCCT CAGCTCAGTCATGCACCACCTTCCCAAGAACAACACTTGTTATCTGAAGCAGAACATTCTACTCCCACCTCTTGAGATAT CATCATAGGTGAGCCCAGCCTTTTCATCTCCTCCTTGGCGTGAGGGTCCTATGACGCTGTGTACCCATGGCCCTAGCTGT TGATGGTGCGCCTCTTGCTCCCCGCGATCCCTCTATTGACAATAACAGGAGTGACACACTAACAGCGTGATGGTGCTAGA ATTTGATCCAACGTTATGGACCAAATGACGGACGAATGACATGGGTTATTACTCCACATGTTCTCTTGTTGCATGAGAAA ACAGAAATTTTGGGATTATAATCTCTTGATTGAATTGAAAACATATGGCTGTAAAATAGCCTTACATCACAACTGCCACA CAAAGTGGACTCAAACCACTAACTAAAAGACCAACAAAGAAGGAGAAACTAAATCAACAACGGACACCAAATTGCACATA ACTTTTCATTAAATTGAAGCCGTGTATGATCTTTTAAAAATTCAAACAGAAAATCTTTTAAACTCCATCTTACTAGTTTT TTTTGGTTGAAGGAGGCGGGCTTAGCAGCCCAAATGACAAAACCAATAACTACAGGCCCCTATAGTAGATAGTAGAGGCT CTGTCAGATGCAAAGGCGACATAACATAAACTGGGGAGCGACTCAAAGACCCTCCCTAAGTTCAAGACTCAAACCCGAAC CATGCTTGGCCAAAGCATCCGTAGCTGAATTGACCTCACGAAAAACTTGACCCCAGACAACATGCGAGAACTCCTGCAGA GCGCCATGGATCTGACTGACAAGAGATGATTAAAAAAATGTGCTTAGGTGGGTGTATCCGTGTATGCCAACATTTTATCC AGACAAACTAATTGCAAATTAAGATCATGCAAATTGTGAATCTATCATATTCACCTCACCTTGTTTTCTCATTGTTCTGG GAATGAACATTGAGGAAAGGTATAGTACTTAAGGGTAGAGAGATTGTGCTAGAGAGAGAGAGAGTAAGAGAGAGAATGCT GAATTTTATGTGTTACTTCATCAAATGAGCCAAAAGTCCCTTACAATTGATAACTACCTCCTATTT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0494900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCACGCCGGATTGAGAACCTTGAAATCTGCATCCCCCCACTTTCTCGTGGTATTGGTTTGAAAATTTACAGCTGCAG AACCCTTGTTGTTCTCAAGTTGAAAGGGTATCCATTAGGTGTGTACGTTTCTTCTCATGTTGAGCTTCCCTCACTCAAAT CCCTACATTTGGAAAAGGTTCATTTCGTAGATTTTCAATCTTTTTTGAAGCTTATTTGTGGGTGTCCATTACTTGAGGAT TTGGAAGCAGGTACTGTTAGTTATTTGGATACAAGTTTTGATCAAGAGTTTAGATTTAGAAGCTTGCCCAAGTTGGTCAG TGTGGTTATAAATGATTATAATTTCAGGTTTCCCCTGAAAATAATCAGTAATGCAGAATTTCTAAGCATTGAAGAGCGCA CCTTCGGTAGGGTCACTAGGGTGTTTAATAGGGTGGTTCTTGAATTCCCTAATTTAGTTCATGTGGTATTCACCTCTTTG GGCTCTTTGAGCTGGCATTTCGTGTTTGAGATACTAAAAAATTGCCCCAAGCTCCAGGATTTTGAACTTATATTTAGTCG AGATCCTGACAGTATGACTCTTTTGCCTTACCCTCAATTTATTCCTGAATGTCTTACTTCACAATTTAGAAACTGCACTC TTAAAAATTACAAAGGCACAAGATGTGAGCGGCTATTTGCACAAGACATTATGCAGCATTCAACATCTTTAAGGACCATG AAAATTTGTAGTAGGAGTTCCTTGAGTACAGAAGCAAAACATGAAATGCTTAAACAATTAGCTTTATGTCCAAGGAGATC TGCCTTGTGTGAACTTTCATTCATATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0494900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPRRIENLEICIPPLSRGIGLKIYSCRTLVVLKLKGYPLGVYVSSHVELPSLKSLHLEKVHFVDFQSFLKLICGCPLLED LEAGTVSYLDTSFDQEFRFRSLPKLVSVVINDYNFRFPLKIISNAEFLSIEERTFGRVTRVFNRVVLEFPNLVHVVFTSL GSLSWHFVFEILKNCPKLQDFELIFSRDPDSMTLLPYPQFIPECLTSQFRNCTLKNYKGTRCERLFAQDIMQHSTSLRTM KICSRSSLSTEAKHEMLKQLALCPRRSALCELSFI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.80.10.10
2 186 185 1.8E-11
IPR032675
PANTHER
PTHR32212
3 272 270 6.0E-40 –
PANTHER
PTHR32212:SF263
3 272 270 6.0E-40 –
SUPERFAMILY
SSF52047
19 184 166 9.81E-13 –
Pfam
PF07723
51 76 26 4.5E-7
IPR013101
Pfam
PF08387
199 242 44 5.8E-7
IPR006566
SMART
SM00579
203 275 73 0.0018
IPR006566

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0494900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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