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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0494900 |
| Transcript ID | LotjaGi3g1v0494900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56420.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420; TrEMBL-Plants: tr|V7B6U0|V7B6U0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0494900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91303531..91307051) extracted from Lotus japonicus Gifu genome v1.2.
ACATTAGCTGACACAAGCGGAACCAACACTGGCGAGACCTCCTCAATCCAGACAGGCCCTGGTAAAGAAGATGCATGCCT AGCCAGGAGGTCTGCAACCTTATTACCGGTACAAAGGACAAAGATAACAGAAACATAGTTAATATGAGAAACTAAAATGT GACAATCCGCTAAAACAGTAGAAAAATAAGAAGCAACATCCACAAAGTTCTTCCATCCATTATAAAGCTGAAGACAATCT GTCTCCAAGCAAACTGTCTGAAAACCAAGTTCGCTTGCCATGATCATAGCCCACCGTAATCCTTGTGTCTCTGCTAATTT TGGTGATAAGCATTGCACCAAATTTGATGTGGCTGCAGCAAGAACTTCACCTCTGTAGTTACGTGCAACCAAAGGAAAAT ATGCACCTCCTCCTCCCTCTTGAACCGTGGCATCGACGTTAACCTTTTTTTTTTTGTCAATGATAGTTATATTAAGCAAA GGCCCAAGGCCGAGCCCACAAAGGGAAGAAACAAGAGGCTGGAACACGTTAGCCAGCAAGAAAGATATTCTCCACTTGGT AAAAACAAAGGAAGCAAGTGGTCCCTCTAGACTTAGAAAAGCTAAATGCACATGGGAAGCAACAGAGGCTTGAATTACTC CAACCACTTTTCCAAAGAAACAAGCGGCAATAATGCTGATGGGAAAGTACTTGTGCAATGGTCTTATCTCTTCCAAGAGG CCATGGACAATCAAGCAAAATCTGCAATTTCTTCAAGACCGGCAGAGACAAAGCTTGCTACCAAGATAGACTTCAACCAG GGATGACAAGGAAGGTCTAAAGGCAGTGAGAAGGAACATGTGTTCAGAATCCAACAGCAAGATCTCCAACTCAGTAAGCC ATTATTTGAAGCATCTTCAACAAGGCTCTCCGAAGCTCCCAACCAGTCACTCTGATGGCAATAGGAGCAAAGGATGAGAC CAGGGAGGAGTAACTAGAGGAGAGTGAGGCATCCCTGAAGACAAAAGAGCAGGTTGCAAGGCATGGGCATGCAAGTCAGA GCCAAGAACAGAGAGAGCCTTGTTTAAACTCCATCAAGAGTTGTGGGCACTTGGGAAGCCATTTCTGAGAGCTGCTGCTT TGGCATCCTCCACTAAGGCCCAACGAAGCTCCTGAGGGGGGCTAAACAACCAGTTATCCAATAACTTGTTTTCCCTGCAA AGTTTTGCAACTTGGTGGGCAGAATTGTTCCTCTCTCTATTGGTCCATGCGAACTCACAGTCATGAAATTGGCCTTTCAG GTATATGATATCTCGTAAAATTGCACTAGCTTCACCTATTAAAATCTCTGATCTGCATGCCTCCACTAATTGTTTATTAT CTGATTCCAGCATCACATCTTGAAAATTGAGATTAAGGGCCAATATTAGTCCCTCCCTGATTGCTTGAGCCTCTGTTGTC AAAGGGGAAGAGGCAAACACCTTAGAACTTGAACCGGCAAGGAGGGTGGCAAATTTGTCTCGGATTACTGCTCCAACTGA GGCTCGAGGTAGGTTGATCACCTAGCTTGCATCCACATTTATTTTGAGGATGTCCCCGCGAGGGGGAACCCAGTCTGCAG CTCTTGAAGCTTGTTGTGTGTGGTTTTCCTTGATTATGTCTTCCTTGACAGGTTAACCTTGATGGTGCCTTGCCCACATA ATAAACAGCTATACATGTCAGTTGAATAAAGCGTGCAACATTCAGCCCATTTTGGATCGGGCCATAATATTATGTTTTCA AATTATTTTGGGCCTCTTCGGATATCAGTGTTCCTTGGGCTTTTCAGCCCATAGAAGCAAGTCACTAGTCTCAACCATAA ACTATATAACCGTGGCTCACATCGCACCCAGACCCAAAACCCTAAGCTCGAACGGGGCTCCGCCACAGCCACCTTCCGCC ACAGCCACCGCCATCCATTCCAGTGAACCCTAATTCACCTCTACGAGATTTCTCTGTTGATTTACGATGGACATGATTAG TAGGTTACCCGATGAAATCCTCTGTCACATTCTCTCTTTTCTCCGAACCCACGAAGCAGTTGCCACACCTCTTGTTTCAA AGATCTCCGTTCCCGCTCTCGACTTGGACCACTTCGAATTCCGTCGCGCAACCCGCAAAGGGTGGGTGGAGGAATCTCTG GATATCCCTTCCTTTGAGAACTTCGTAAACGCAACCATTCTCGCCAGAGACGAGCGACAACCCATCACAAGATTCTGACT CTTATATGAGTCGACTGTTAGCTTGGAAGGTTCTGATCTTGTCCATGATTGGTTAAACACTGTAATGCCACGCCGGATTG AGAACCTTGAAATCTGCATCCCCCCACTTTCTCGTGGTATTGGTTTGAAAATTTACAGCTGCAGAACCCTTGTTGTTCTC AAGTTGAAAGGGTATCCATTAGGTGTGTACGTTTCTTCTCATGTTGAGCTTCCCTCACTCAAATCCCTACATTTGGAAAA GGTTCATTTCGTAGATTTTCAATCTTTTTTGAAGCTTATTTGTGGGTGTCCATTACTTGAGGATTTGGAAGCAGGTACTG TTAGTTATTTGGATACAAGTTTTGATCAAGAGTTTAGATTTAGAAGCTTGCCCAAGTTGGTCAGTGTGGTTATAAATGAT TATAATTTCAGGTTTCCCCTGAAAATAATCAGTAATGCAGAATTTCTAAGCATTGAAGAGGTTTGTATATATCCTGAAGA TTATGTATTTGATTTCATTTTTGTAGAAAATCATATTCACACCTATATTTCTCATCATAGTTTGTCTTTATAACTTTTGC AGCGCACCTTCGGTAGGGTCACTAGGGTGTTTAATAGGGTGGTTCTTGAATTCCCTAATTTAGTTCATGTGGTATTCACC TCTTTGGGCTCTTTGAGCTGGCATTTCGTGTTTGAGATACTAAAAAATTGCCCCAAGCTCCAGGATTTTGAACTTATATT TAGTCGAGATCCTGACAGTATGACTCTTTTGCCTTACCCTCAATTTATTCCTGAATGTCTTACTTCACAATTTAGAAACT GCACTCTTAAAAATTACAAAGGCACAAGATGTGAGCGGCTATTTGCACAAGACATTATGCAGCATTCAACATCTTTAAGG ACCATGAAAATTTGTAGTAGGAGTTCCTTGAGTACAGAAGCAAAACATGAAATGCTTAAACAATTAGCTTTATGTCCAAG GAGATCTGCCTTGTGTGAACTTTCATTCATATGATAACTGGTAGGTTTATTAGTGGCTGCAAATTGTTCTTAGATTATTA CATATGTTATTAATTAATCTAATGTTTGAAGAACATGGATGGATTTTGTGTAATTTTCTTGTCCAGTGCCCATATCTATC TGATTATTGTTTGGTAAATTCAGTTCTGGTACCAAACTTGGGTTTATAAATGGATAGTACTATTTCTTATTTGGTGAAGT ATTGTGCTCTGTCTCTCTATCTCTCTTCCAAAAGTTTATTTTTGCTCTTAAATGTATGTGTCCACTTAATTTGACCAAAC A
CDS sequence (LotjaGi3g1v0494900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACGCCGGATTGAGAACCTTGAAATCTGCATCCCCCCACTTTCTCGTGGTATTGGTTTGAAAATTTACAGCTGCAG AACCCTTGTTGTTCTCAAGTTGAAAGGGTATCCATTAGGTGTGTACGTTTCTTCTCATGTTGAGCTTCCCTCACTCAAAT CCCTACATTTGGAAAAGGTTCATTTCGTAGATTTTCAATCTTTTTTGAAGCTTATTTGTGGGTGTCCATTACTTGAGGAT TTGGAAGCAGGTACTGTTAGTTATTTGGATACAAGTTTTGATCAAGAGTTTAGATTTAGAAGCTTGCCCAAGTTGGTCAG TGTGGTTATAAATGATTATAATTTCAGGTTTCCCCTGAAAATAATCAGTAATGCAGAATTTCTAAGCATTGAAGAGCGCA CCTTCGGTAGGGTCACTAGGGTGTTTAATAGGGTGGTTCTTGAATTCCCTAATTTAGTTCATGTGGTATTCACCTCTTTG GGCTCTTTGAGCTGGCATTTCGTGTTTGAGATACTAAAAAATTGCCCCAAGCTCCAGGATTTTGAACTTATATTTAGTCG AGATCCTGACAGTATGACTCTTTTGCCTTACCCTCAATTTATTCCTGAATGTCTTACTTCACAATTTAGAAACTGCACTC TTAAAAATTACAAAGGCACAAGATGTGAGCGGCTATTTGCACAAGACATTATGCAGCATTCAACATCTTTAAGGACCATG AAAATTTGTAGTAGGAGTTCCTTGAGTACAGAAGCAAAACATGAAATGCTTAAACAATTAGCTTTATGTCCAAGGAGATC TGCCTTGTGTGAACTTTCATTCATATGA
Protein sequence (LotjaGi3g1v0494900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRRIENLEICIPPLSRGIGLKIYSCRTLVVLKLKGYPLGVYVSSHVELPSLKSLHLEKVHFVDFQSFLKLICGCPLLED LEAGTVSYLDTSFDQEFRFRSLPKLVSVVINDYNFRFPLKIISNAEFLSIEERTFGRVTRVFNRVVLEFPNLVHVVFTSL GSLSWHFVFEILKNCPKLQDFELIFSRDPDSMTLLPYPQFIPECLTSQFRNCTLKNYKGTRCERLFAQDIMQHSTSLRTM KICSRSSLSTEAKHEMLKQLALCPRRSALCELSFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 186 | 185 | 1.8E-11 | ||
| PANTHER | 3 | 272 | 270 | 6.0E-40 | – | |
| PANTHER | 3 | 272 | 270 | 6.0E-40 | – | |
| SUPERFAMILY | 19 | 184 | 166 | 9.81E-13 | – | |
| Pfam | 51 | 76 | 26 | 4.5E-7 | ||
| Pfam | 199 | 242 | 44 | 5.8E-7 | ||
| SMART | 203 | 275 | 73 | 0.0018 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0494900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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