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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0499500 |
| Transcript ID | LotjaGi3g1v0499500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger, B-box; TAIR: AT1G06040.1 B-box zinc finger family protein; Swiss-Prot: sp|Q96288|BBX24_ARATH B-box zinc finger protein 24; TrEMBL-Plants: tr|I3S754|I3S754_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0499500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91796870..91799298) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCTGCAACTGTGATTTGCTGTGCAGATGAGGCAGCTTTGTGTGATAA ATGTGATGTTGAGGTTCATGCTGCAAACAAGCTAGCAAGCAAGCACCAAAGGCTTCTCCTTAATTGTCTATCTAACAAGC TTCCTAGATGTGATATATGCCAAGTAAATTGCTTTTCTTTTATGCCTTTTTTCTTCTAGTTTTGTGGTGTCATGAAATGT TCTTTCACAATTTCTTGTGCTTGAATGGATGTTTTGGTTGTGCATTTTTTTTCCCCTGTCAATAGATCTCATATGTGTTT ATTGTAATTAACAAGAAGAAACTAGGATATAATCTAGGTGTGTTGTTTTGACTTATAAATATTAAACTCTGATAGATAAA AAATCAGGATACCAGATATAACAAGGTGCTAAGTTTAATCAGAGAGAAAATACTAAGTGGTACTCTAAGCAGTTCATATT TGATTTAAATTCTATTTTATAATCAATTACATATGTGCTTATACTAAGCGCATGTTTGGAAACCATTCTATAATCGATTA TGAAGCCAGAATCAATTATGGGGAAAACTTATGTGAGTAGCTTGTGAGTTTTAAAATTAATTTTGGCATAAGTGAAGCTG ATCCAAACATGTGAGTAATGGACTATTGAAGAACTCTTACTTTTTGTTATGTCACAATTTTGAAAACCTAGATGCAAACT ACCAAATTCTTTACTGTTAGCCCAATCTCAGTGACTTGTATTTAGTAATCGGAGAGTCCACCTTGAGAGAGATAGGAATA AAAGAGAGAGAAGTGAGAGTATGATAAATGTGATAAAAAAAAAGATAATTAGGATGAGAAAATGTCTGCAAATGAGACAG AAGAAAAAATAAGTATGGATATATAGAAGTTGTTCAAATTTATCCCACCAGAGTGTTGAAGTAAGCTTCATCGCAGTTCA GTGTAAGGATTATAATATGTGAATCCAGTTGTTCATATAGTCTATATTGGCTTAACACTTTGGCATTTCTTTATTTTGTG CCTTGAGAACATTTCTTTGTAAAGACTTTCAGCTCATTAAGTGGTGAGAATATGGCATACTTTGTTCTGATTGCTCGTTG GCTGAATTGTGCAAATTTCACTAGGAACTTGAGCTGTGTTGAGACATAGAATAGATTATTTAATGTTGAAGTGAAGTGTA ATAGTTGAAATCTCTGTTGAACATGGATGATTTTGTTAACTTTCTCAATTTTCTTTCCTTTCTCCTTCATGTAATCACAG GATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCTCTCTTCTGTAAGGACTGTGATGAATCAATTCATGTAGCTGG TAGCCTTTCTGCAAACCATCAGCGCTTCCTCGCTACTGGTATCCGGGTGGCTTTGGGATCTAATTGTACCAAAGGAAATG AAAAAAATCGCGTGGAACCATCCGATCCGAAAGCACAAGAAGTTCCTGTGAAAACTCCTTCTCAGCAAGTGCCTAGCTTC ACATCCTCTTGGGCTGTTGATGACTTATTGGAATTAACAGACTTTGAATCACCAGACAAAGTAAGACACCTTATCTCAAA ATTCTAGCTGCAACTATATGAGCTAAAAAAATTAGTGCATATATCCCCATCTGTTTTTGTGATGAATGATGATTGGCTAA ACCAGTTATTTTTCAATGGGGTGCTGAATGAGCAATTATGATTTATGAGGAGTTATAGTGAAGAATTTTACTTTAGTGGT GTAGTTTAATTGTTTACTTTGCCCAAAATTAAGACTTAATGGAATTTTTCTGAATGAAAGACCCATAAGGGAAGAGGGTA GTTCATTTAATTTAATAATTAGCTATAGCAATATTAGAATTCGGGTTACGCCTATCTCTACTCCAAAAGCTAACTTAGAG ATAAGGGTTTCTCTACCATTTATAAACACTTATTATGTCATATCTCTAGTCAATGTAGGATTTCTTAACAAGCAGGTTAA CTTCTTTGTAATACATGATCTGACATTTGGTTTATCCGATTTTAGAGGTTTTGAAATAACACTTTGAACAATATTTGCAC AATATCTTGTAAAGGACTATGGTAAGGAGATTTTAATCCTAACCTTTTATGAATTGTTAACTGGCCACTTATTATGATGT TAAGAGCTTTGTTTTTTTTCTTTCCCTATGTTCAGAAGCAATCACTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCA GGTCTTTTCAGTGAGCAGTTTCCTCATGAAGGTTTAGCTGCAGCTGAAGTTCCACAACTTTCAGTAACACACACTAGCAG TGTTGTCTCATACAAAGCCCCCAAGTCCTTCATGTCTCACAAGAAGCCTAGGATTGAAGTCATCGATGAAGATGATGATG AGCACTTCACTGTGCCTGATCTTGGCTGA
CDS sequence (LotjaGi3g1v0499500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCTGCAACTGTGATTTGCTGTGCAGATGAGGCAGCTTTGTGTGATAA ATGTGATGTTGAGGTTCATGCTGCAAACAAGCTAGCAAGCAAGCACCAAAGGCTTCTCCTTAATTGTCTATCTAACAAGC TTCCTAGATGTGATATATGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCTCTCTTCTGTAAGGACTGT GATGAATCAATTCATGTAGCTGGTAGCCTTTCTGCAAACCATCAGCGCTTCCTCGCTACTGGTATCCGGGTGGCTTTGGG ATCTAATTGTACCAAAGGAAATGAAAAAAATCGCGTGGAACCATCCGATCCGAAAGCACAAGAAGTTCCTGTGAAAACTC CTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTATTGGAATTAACAGACTTTGAATCACCAGAC AAAATAAGGAAGCAATCACTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTCAGTGAGCAGTTTCCTCA TGAAGGTTTAGCTGCAGCTGAAGTTCCACAACTTTCAGTAACACACACTAGCAGTGTTGTCTCATACAAAGCCCCCAAGT CCTTCATGTCTCACAAGAAGCCTAGGATTGAAGTCATCGATGAAGATGATGATGAGCACTTCACTGTGCCTGATCTTGGC TGA
Protein sequence (LotjaGi3g1v0499500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIQCDVCEKAPATVICCADEAALCDKCDVEVHAANKLASKHQRLLLNCLSNKLPRCDICQDKAAFIFCVEDRALFCKDC DESIHVAGSLSANHQRFLATGIRVALGSNCTKGNEKNRVEPSDPKAQEVPVKTPSQQVPSFTSSWAVDDLLELTDFESPD KIRKQSLEFGELEWLADAGLFSEQFPHEGLAAAEVPQLSVTHTSSVVSYKAPKSFMSHKKPRIEVIDEDDDEHFTVPDLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 94 | 94 | 1.4E-6 | – | |
| PANTHER | 1 | 240 | 240 | 4.6E-97 | – | |
| PANTHER | 1 | 240 | 240 | 4.6E-97 | – | |
| ProSiteProfiles | 1 | 47 | 47 | 9.215 | ||
| CDD | 3 | 47 | 45 | 1.27512E-6 | ||
| SMART | 4 | 47 | 44 | 1.0E-9 | ||
| Pfam | 4 | 44 | 41 | 2.3E-5 | ||
| ProSiteProfiles | 52 | 99 | 48 | 9.471 | ||
| SMART | 52 | 99 | 48 | 3.5E-15 | ||
| Pfam | 53 | 95 | 43 | 1.8E-7 | ||
| CDD | 55 | 98 | 44 | 6.47747E-7 | ||
| MobiDBLite | 113 | 132 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0499500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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