Transcript — View — Lotus Base

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LotjaGi3g1v0505200.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0505200
Transcript ID	LotjaGi3g1v0505200.2
Related isoforms 1	LotjaGi3g1v0505200.1
Lotus japonicus genome version	Gifu v1.2
Description	Methyltransferase-like protein 13; TAIR: AT4G34360.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|A8MUP2\|MET12_HUMAN Methyltransferase-like protein 12, mitochondrial; TrEMBL-Plants: tr\|A0A1J7HCK6\|A0A1J7HCK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:92279277..92279877) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTAAATTAAATGGTTTTCCTTTAACTTGTATTGGAACTTTTGCTTTATATTGTAAACTAATAATTATGACTCCAAAA ATTTGAAAGTTTTTTGAAGTTTTAAGGGTTAAATGTGAATATTTTATCTTTGATTTTGTAGGATGTATTGTTCGTGGACA GTGGTGACCCATGGAATCCTAAGCCTGAAACTATATCCAAGGTCATGGCCACATTGAAAGGTGTTCATAGGGTTTTGAAA GCAAATGGCACATTTATCTCCATAACTTTTGGCCAGGTTTCAAGAATGAATTGTTATTTTTGTCTATTTTAATCGGTCCT CTGATTCTAATATACTTAAAATTTATGCCAGCCACATTTCAGGCGTCCTATATTCAATGCAGCAGACTTCAGCTGGTCTG TTGAGTACACTTCTTTTGGTGAAACCTTTCACTATTTTGTCTATGTTCTGAAGAAGGTTAGTCCATATGGCTTCACTTTT TTATTTTTCTTATGATGATGAAAACAAATGTCTGTTGTTGCTGTATTAAGGTACTGCTACCAAGACTTGAACATGACCAT TTCTAGAGTGAGCACACTTTTTGTTTCTTCAAATTTCTTAA

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CDS sequence (LotjaGi3g1v0505200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGTATTGTTCGTGGACAGTGGTGACCCATGGAATCCTAAGCCTGAAACTATATCCAAGGTCATGGCCACATTGAA AGGTGTTCATAGGGTTTTGAAAGCAAATGGCACATTTATCTCCATAACTTTTGGCCAGCCACATTTCAGGCGTCCTATAT TCAATGCAGCAGACTTCAGCTGGTCTGTTGAGTACACTTCTTTTGGTGAAACCTTTCACTATTTTGTCTATGTTCTGAAG AAGGTACTGCTACCAAGACTTGAACATGACCATTTCTAG

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Protein sequence (LotjaGi3g1v0505200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDVLFVDSGDPWNPKPETISKVMATLKGVHRVLKANGTFISITFGQPHFRRPIFNAADFSWSVEYTSFGETFHYFVYVLK KVLLPRLEHDHF

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	1	86	86	3.8E-19	–
PANTHER	PTHR12176:SF57 View details on PTHR12176:SF57 Search for proteins/transripts with this domain View external data on PTHR12176:SF57	2	81	80	7.0E-19	–
PANTHER	PTHR12176 View details on PTHR12176 Search for proteins/transripts with this domain View external data on PTHR12176	2	81	80	7.0E-19	–
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	2	76	75	3.01E-5	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0505200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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