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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0508500 |
| Transcript ID | LotjaGi3g1v0508500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT4G39260.3 cold, circadian rhythm, and RNA binding 1; Swiss-Prot: sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801; TrEMBL-Plants: tr|B7SDF0|B7SDF0_ORYSJ Glycin-rich RNA binding protein; Found in the gene: LotjaGi3g1v0508500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92548267..92551109) extracted from Lotus japonicus Gifu genome v1.2.
ACAAATAAAGAGAAAAAAAAAGTCAAGAGAAAATATCTATGAACTCTCGGCGGCACAAACTACATAGCTAAACCCTAGAA GCAAACAAGGCGGCACAAAACCCTAAATTAACTCTGGTTAAACCCACCAACGTAACCCTAGTTAGATTTCACCCCCTATA TAACAACGACTCACTCGGTGTATCAAATCACTCAGCTTCGTGCTACCACTTTTCACTCTCTCTTTTTCCCCAATTTCTAG GGTTTTCAGATTCCGCCATGGCCGATGTTGAGTACCGTTGCTTCGTCGGTGGTCTTGCCTGGACCACCGATAGCCATACC CTTGAGCAAGCTTTCTCCTCCTACGGCGAAATCATTGATTCTAAGGTCCGTTGTTTGTTGCCAGGGTTCGCATCCGGATC TGACACGATTCTTCTGATTCTGTGATCTCTGATCTGTTTGCGTTACTTGATCTCATCCCTTGTTACTGTTACTGTTACTT CTGTTACTATATGATTCTTGTTTTTTCTCACTCACGCCAATAGGTACGTTCCTTCTTCTTCCTTTCAAAGGCGAAGATCG ATCGGTTACTATTCGGTTCTGGATCTGTTGTTTTTCTTCAATTTTTCCTCAGATCTGATGTGAATTTTGGTTTTTATATG CAGGTTGTCAACGATCGTGAGACTGGAAGGTCAAGGGGATTTGGATTCGTGACCTTCACTTCTGAGGAGGCTATGAGGAG CGCGATCGAGGGGATGAACGGCAATGAGCTTGACGGCCGTAACATCACTGTGAATGAAGCCCAGGCTCGCGGCGGAGGCG GCGGCGGTGGCGGTCGTGGAGGAGGTGGATATGGAGGCGGCGGCGGTCGTCGTGAAGGTGGATATGGCGGTGGCGGTGGA TCTCGCGGCTATGGAGGCGGTGGCGGTGGATATGGAGGAGGAGGCGGCGGTGGTTATGGTGGTCGTCGTGAAGGTGGATA TGGTGGTGATGGTGGTGGCTCCCGCTATGGCAGCGGCGGTGGTGGCGGCGGTGGAAACTGGAGGAGCTAGATTGTTTGTT TACCCTAGGGTTTATGAATTATGATTATGTCAGTTGATTAGTTTGATTTTGAGTATCGTTTATGGTTCCTTGTTATTGTG GTGCTTAATTCGAATGTGGTTGTTTATAAACCATATATTGAAAAGATAATCAGATCTTAGTTTTGTCAAATTTCTACTGT TTTTGTTGTTTTCGTATTTATCGTTTTTCAACTAGAATAATTAGGGATCATCTAAAGTGAAATGCAAAATTAAAATTAGA TTGGTTTTTATCATCATAGCAATAGGTTGTCTTTGTCAGTGTACTCGTTTCAATGATGAATTATAAATTCTCTGAACTCA ATTATTTCTATGCCAACTTGGTAGTAAGTGGTGTGAGAACTGAGAAGAGATATTAAATTATTATGAGCAAAAAGATAAAG GTGAAGATTTTCTTTAGGATAGGATATACCTTAAACAAAAAGGAATCTTTTAGTGTTCATGTACTTATTATAAAATATAA ATGATGAGAAGTGTCATTTGTGCATTATGATTATCAATTATTTGAATTTCTGAACGGTAGAACAAGTGGAATCAATAGAT AAAATCTTGTAACCCCTTAATTGAGGAGAAAACCAACGGTGTCGGTGATCAGTCAATTGTGAAGATTCAATGAATTGGTA GGTGACTAATTAGTGCATGTTGGGTTTCAATGATTTAATAAATTGGTAGGAGACAAATTTGTTTTGACCTAAAATATGAA TAGTTGAATATTAAGTTAGAATTGTTTTTCAAGATTTAAGATTTTCTTTTTGGTTTTTGAAAGATAATTGAAAAATACGT TTTATTCAATAAATTAGTTTTTAAATGTGCACTTTGTCACTGAAAGGAGAACTTACAAGATTTGACACAACTATATATAA AGTATAGACTGATTTATTCATTTTTCACGTTTTTTTCTTTTAAATTTTCATCTTTGAGCCTAACAACATATCTTTCAAAG GTGAAAATGGCACTTTATGCTTTATGTGATGAACATTCTTCTTGCATGATAATACTGTATCTATAGTGTGAGATTCTTTT TGCTTGAGAATACTGTATCCAACATTCATATCTAATGGTTTGGTTATATGTTTTAGGCTATGTTTGGTTGGGAAAGAAAA GTGAGAGAAAAGAAAGGAAAATAAAAGAAAGGGAAAGGAAAAGAAAAGAGTGGAAAGTGAGATGATTCTTTAGGTTGTTT GTTATGAGAGAATGGAAAAGAAAAAGTGAAAGGAAAGAAAAGAAGTATGATGAATAATTACTATTTTACCCATTGACATA TAAATTGTTATCAACAAATAAAAATCACATTGTATTATTGTAATATACATGTATATTTTTATATTTACTATATTATTACA ATTATTATTTAACAACTAACAAGAATAACAAAATCAAAGAGTTAGTCTGTTAAAAAACAAAAAAAACAAAAAACAAAAAA CAAATAGCAACCGAAAAGTTTAGAAAAAGAAAAGCTAATAGAACGAATATTTTAATATTTGAATTAGAGATATTATAAAT TTATATATTTGACTAAGTATTTTATTATTACGAATGTTCAATAAAATAATAAACTAGTGTTACGTAAACAAGGTTACAAT TCGTTATAAAAAAATGGTTACAAGTCATTTTTTTTTTGAGCAAATGGTTACAAGTCATTATTAAAACAAGAAAGTACTTG TATAATAAATAAGTGAGGGGGGCTATTGGTCATTTCCAACAAAACTTTTGCAATTATCAACTTTCTTCCCGTTTTGGAGA GAAAGCATATCTGCGTGGGTCCCATGTGTTTTTTTCCTTTCCG
CDS sequence (LotjaGi3g1v0508500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGATGTTGAGTACCGTTGCTTCGTCGGTGGTCTTGCCTGGACCACCGATAGCCATACCCTTGAGCAAGCTTTCTC CTCCTACGGCGAAATCATTGATTCTAAGGTTGTCAACGATCGTGAGACTGGAAGGTCAAGGGGATTTGGATTCGTGACCT TCACTTCTGAGGAGGCTATGAGGAGCGCGATCGAGGGGATGAACGGCAATGAGCTTGACGGCCGTAACATCACTGTGAAT GAAGCCCAGGCTCGCGGCGGAGGCGGCGGCGGTGGCGGTCGTGGAGGAGGTGGATATGGAGGCGGCGGCGGTCGTCGTGA AGGTGGATATGGCGGTGGCGGTGGATCTCGCGGCTATGGAGGCGGTGGCGGTGGATATGGAGGAGGAGGCGGCGGTGGTT ATGGTGGTCGTCGTGAAGGTGGATATGGTGGTGATGGTGGTGGCTCCCGCTATGGCAGCGGCGGTGGTGGCGGCGGTGGA AACTGGAGGAGCTAG
Protein sequence (LotjaGi3g1v0508500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGMNGNELDGRNITVN EAQARGGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRGYGGGGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGG NWRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 117 | 116 | 3.5E-52 | – | |
| PANTHER | 2 | 117 | 116 | 3.5E-52 | – | |
| Gene3D | 2 | 101 | 100 | 5.3E-30 | ||
| ProSiteProfiles | 6 | 84 | 79 | 19.621 | ||
| SUPERFAMILY | 6 | 94 | 89 | 7.66E-29 | ||
| SMART | 7 | 80 | 74 | 8.3E-28 | ||
| Pfam | 9 | 77 | 69 | 1.2E-22 | ||
| MobiDBLite | 81 | 104 | 24 | - | – | |
| MobiDBLite | 121 | 164 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0508500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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