Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0511200 |
| Transcript ID | LotjaGi3g1v0511200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | H+-transporting two-sector ATPase, alpha/beta subunit, central region, related; TAIR: AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P74260|GLPK_SYNY3 Glycerol kinase; TrEMBL-Plants: tr|G8DCX5|G8DCX5_PHAVU Putative non-LTR retroelement; Found in the gene: LotjaGi3g1v0511200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92836220..92837394) extracted from Lotus japonicus Gifu genome v1.2.
TTCTGGAATTTATAGCGTTAAGTCTGCGTATGATTCGCTACAAGAAAGCCCGGCGTTTGTGGAAGGGAATGTTTTTAATA GAATTTGGAAGACCAAAGCTCCCTCTAACTCAATAGCTGTGGCCTGGAAAATCCTTCTTAATAGGATCCAAACTAAGGCT GATTTGGCTCATAGGAGTGTGTTACCTGCTAATTCTGGATTGGAATGTGGTTTATGTATGAGTAAGGATGAGAATTGTTC TCATCTCATTTTTGAATGTATGACTAGTTGGATTGTGTGGACGAAGGTATGCAACTGGCTTGGTGTTCGAACTGTTCTGC AGAAAGATCCTAAGGCATGCTTTATTCAATTTTGTGAGGTACTGGGTGCAGGTATGCGTTTTCCTAAATCGATGGGGATG ATCTGGATTGCTACTGTTTGTGCAATTTGGTATCAAAGGAATAACTCTGTTTTTAAAGGAGAGGCAGTGGAGGTGGATAG GATTTTTGAGTCCATTCAGTTCAGAACATGGCTTTGGCTAAAAGCAAAGGTTAGGGGTTTCTCAGTGTCTCATTACGAAT GGATCTCAAATCCTACGTATTGTCTCAGTATGGTAGGAGAGTGATTTTCTTGATTGGTGATACTTTGACAAGTCGAGCTG GTGAGTTGGTGGTTTGTAGGTACTGATCTGGAACTTAAAGGCTGTGTTGATCTGCTTGTTGGTGAATTGAGCCTTATATA CTTATAAAATGCTATCTTGTGTGAATGACGGGTGGTGGCAATTATATTTCGGCTCTGTGGGGCTAGGCAAAGGTTGGTAT AGCAGAACAAGTGTTGAAGCTTCTCAATTCTAGGAGTGGCTATCTAATCTTCTTATATGTTGGAGATTTTTGGATGTTGT GTCATATTTCTGGAGTTATTTGGTTCATGACAAGTCTATTGTTCAGTGGAGGTGGGCAGTAGTAAAAACACTTCATGTTG AAGTGATACGTGATGAAAGTTGGAGGTATAATCATAGCATGTGGGAGATTTCTTTGATAGCAGTGTGTAATTAGTGGATA TTTCTCAAGATTTTGAAGGCCTGGTAAAGGAGAGAATTTATTATTGTTTAATTCAGGGCATGGTTGCCATGGAGGTTTTT GTGGAATGTAAGCATGTGGGAACCTGCTGCTTCTTTAGTTGGGGTTGGGAAGGGA
CDS sequence (LotjaGi3g1v0511200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAAGGATGAGAATTGTTCTCATCTCATTTTTGAATGTATGACTAGTTGGATTGTGTGGACGAAGGTATGCAACTG GCTTGGTGTTCGAACTGTTCTGCAGAAAGATCCTAAGGCATGCTTTATTCAATTTTGTGAGGTACTGGGTGCAGGTATGC GTTTTCCTAAATCGATGGGGATGATCTGGATTGCTACTGTTTGTGCAATTTGGTATCAAAGGAATAACTCTGTTTTTAAA GGAGAGGCAGTGGAGGTGGATAGGATTTTTGAGTCCATTCAGTTCAGAACATGGCTTTGGCTAAAAGCAAAGGTTAGGGG TTTCTCAGTGTCTCATTACGAATGGATCTCAAATCCTACGTATTGTCTCAGTATGGTAGGAGAGTGA
Protein sequence (LotjaGi3g1v0511200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKDENCSHLIFECMTSWIVWTKVCNWLGVRTVLQKDPKACFIQFCEVLGAGMRFPKSMGMIWIATVCAIWYQRNNSVFK GEAVEVDRIFESIQFRTWLWLKAKVRGFSVSHYEWISNPTYCLSMVGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 109 | 107 | 2.5E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0511200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…