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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0526500 |
| Transcript ID | LotjaGi3g1v0526500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP-5 complex subunit beta-1; TAIR: AT3G19870.2 AP-5 complex subunit beta-like protein; Swiss-Prot: sp|F6S215|AP5B1_XENTR AP-5 complex subunit beta-1; TrEMBL-Plants: tr|A0A0B2P899|A0A0B2P899_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0526500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94300574..94305159) extracted from Lotus japonicus Gifu genome v1.2.
TAAATACAAGACACGCTGGACTAATCCGGTTCAGACCGGTTCAACATCTCCTACCCAAACAGTGTTGTTGATGTTATTCT ATGTAGAACAAGATAGCAGCTGAGTCAGTTAACTCCTCCGGCAAGCCATGGCGGCGCCACCACCGTCGAAGCCTCTCACT CCTCACGACTGGGAAACCCTAATCGACGATTTCCAGTACGCCGGCGATAAATGGCGCTCTCTCGATCCTCCTCTCACCGA TCTCCTCTTCACCTCTCTTCTCCGCAAGGACTTCCCCCTCAACCACAAGCTCCAGCTCCTCATCTTTCTCGACGAATTCT CCACCTCCCTCTTCTCCGACCACCACCACAACCACCTCGACCGCCTCCTCGACGCCCTCCGAACCACCATCCACGCGCCA CCCGACGCGGCTCACATAACCCCCGCCTTCAAGGAACAATTCATGGTCTCCGCCACCTCGATCATCATCTGCGTAACCGA AAACGATACGGTTAGGGCTCACACGGAGAGTTTGGTGGAGCTGCTGTTGACGGTTATCAACCGCCCGAATTTCGGGTCGG ATCGGCATACCCGATCCATCGCGTGCGAGTGCTTGAGGGAGTTGGAACGATCGACGCTGTGCTTGCTCTCCGACGTGGCG GGGCACTTGTGGAGCCTCTGCCAGAACGAGCGGACGCACGCTTCTCAGTCATACATCTTGCTCTTCACCACCGTCATTCA CAACATCGTTGCTCGGAAGCTTAGTGTTTCCATTCTCAACACCTCTCTTCCTATGATTCCTTTCAACATGCCGAAGATAG ATGATTCCGGTGCGGGTTTGAATTACAAGGAGTTGAGGAGGGCGTTGGCGTTTTTGCTTGAGTGGCCTCAGGTGATGACC CCTTGTGGGATGATGGAGTTCGTGTCGATGATGATACCGGTGGCTGTGGCGTTGGAATTGCAGCCCTCCATGCTCAAGGT GCAGTTGTTTGGAATGATTCATTCCTATAACCCTGTGCTTTGCCATGTTGTTTTGACCATGTATGTGCAATTTTTAGATG CTTTTGATGGTCAAGAGGGAGAGGTTTCTCGCAGGCTCTTGTTGATTTCGAAAGAAGCTCAGCATTCTTTGGTGTTTCGC TTGTTGGCGGTTGAGTGGTTGTTGGGGTTCAATCAATTGATTTTCAGTAGAAATGTTGAGAAGACTAAGCCCACCATTGA AGCTTGCTCTGCATTTGGTCCGGCTTTGTTTGATCCGCTGTCTTTGAAGGCCTTAAAGCTTGAACTTCTTGCATTTTGCT CCATGTGTGTTCATGTCTTGAGACTCAAAAGTGGTAATGACTCTCATCATGTTGAGGATGGTTTCATTGATCCAGTGAAG CTGTTTGAACATGGTCTCCTTTGTGTCTCATCTTTCAAATCGCTGCCTCCGGGGAGCACAGAGATTGCCATTGCGTTCCG TGCCTTCCATAAATTTCTCATTGCTGCTTCTCCTCATGCTGACAATGATCCTTCCACCACAAGAAATCTGTTGGACTCCA TGATATTTTGTACTATGCAGGTGCTTAAGATCATTTTCGACTTTAGAATCTGCATTCTCCCATGTGGATTGGTTGCATTG CATCACATCCCTGTCAGTGGGATTCTTGTATTACAGCTCTAAGCTTAATATTCTTTTATTATTCACTTATATGCTAGTAA CTAGAGAGATCAGAGTCCATGGTTTAGGTGAATTTACTGCTGAGTTGATGTGTGGGTCATGTCTATAGGCATGATATATT CAAGTTTCTTTTTTCAGGGGATGCTTGTGAACATGATGTTGGAGAGTCGGAAACTGGTTCCTGTTGTTGTTACTTCCGTT GACCGTTTACTCTCCTGTCAAAAGCATTCTTGGTTGGGTGAGCGCTTACTTCAGAAATTTGATGAGCACTTGCTTCCAAA AGTGGGGATGGATTATAAGTTGGTTTATTTCTTCCCAATATTTGATAGAATTGCACAGAATCAGACAATACCTCCGCGTG GATTGATAGAACTGCTAACAAATTTCATGATTTTCCTGGTGGAGAAACATGGCCCGGATACATGGATGAAGTCTTGGTCC CAGGGAAGTAGAGCTCTTGGAATTTGTCGAACTATGTTGATGCACCACCATAGTTCTAGATTGTTCCTTAGACTATCTCG CCTGCTTGCTTTTACTTGTCTCTACTTTCCTGATTTGGAAGTCCGTGATAATTCAAGGTATTGATTGTTCTAAAGATTTC TGCTTTTGATATAATCTATTTTCCATTTTTATTCCATTCGCTTTTAGTTTGTGTATTATCTCTTGAAATTAAAGATAGCT TGGGAAAGTCCAGAGTATCTGCAAAAATGACTACTTGGCTTAGCTGATGTGTGGTGTTTTGTAGGACCTACTTGCGTATG CTGGTCTGCATTCCAGGGAAGAAGCTTAGAGACATCCTAAGCGTGGAGGACATGATCCTTGGGATTTCACCATCTTCCCA CTCAACCTCTTTTTTCAATGTTCAATCACCTCGAGCTTCTCAGAAATTCAAGACAATAAAAAACTTACCATCCTGCATTC ACCTGGAGCGTCTGACCCCATTGCTTGTTAAACAGTTTTGGTCTTTGTCGTTGTCAAATTTAGTCATAAGTAACACCAAA CCTGCCTATCTTGAGGGCATCAGGGACCTACAAGCCCCTGTTGAGGAAAAAGAATCTTCTGACAGTTCCAATGCACAGAT CATTCCTGAAACTGGAAGAATTAATCAACCACAAGAGCTGCTTCGAGTTATGGATTCTAAAGTTGCAGAAATTTTGAACA CATTAAGGAAGTACTTTTCATGCATTCCTGACTTCAGACATGTGCCAGGACTCAAAGTTAGAATATCATGCAGTTTGAGT TTTGAATCTAGTACTTTCAATCGGATGTTGGGAATCAAGGATGCTGCCACACCCCTGGAAGAGATAGATTCACTTCCTGC TATATATGCTACTGTGTTAAAATTCTCATCTTCTGCACCTTATGGGTCGATTCCTTCCTATCATATACCTTTTCTTCTTG GTGATCCTCACAGTAAAGATGATGCATCTCAAAATGGCTCGCTAAGTATTGTTCCAGTTGGAAATGATTCCAGAGGAGAG GAAAAATATAGAGCCCCTGTTATGATTGACTTGGAACCCAGGGAACCGACACCGGGAATAGTTGATGTTCACATTGAAAC AAATGCAGAAAATGGTCAGATTGTCCAGGGTCAACTTCAGGGAATCACAGTAGGCATAGAAGACATGTTTCTCAAGGCTA TTGTTCCACCAGACATCCCAGAAAATGCAATGCCTCGATACAAGTTTGACTTGTTCGCTGCGTTATGGGAGGCATGTGGC TCATCCTCCAGCACTGGGCGCGAAACCTTTCAATTGAAGGGGGGGAAAGGGATTGCTGCCATCAGTGGAACTCAATCTGT GAAACTTCTTGATGTTCCCGCAGCCTCTTTGATCCAGGCAACTGAGTACCATCTGGCTCGCTTTGTTGTAGGTGTGAGTG GGGAGCCACTTATTGATGTTGTATTGGAAGGGGGAATCATTCAGAATGTCATTTGGGAAGATGCTTCCTCTGATGCTACA GTTACTAATCCCGATACCGGTCCACTTCGTCTTACTTACAGTGGTGAAGAGCAGCATGAGAAGGGGGTTATTAGCTATAG CAGAAAAAGAAACCTTGGCTGTTTTCTTGTTCTGATATTTCTTCCACCGCGGTTCCATCTCCTTTTCCAAATGGAAGTTG GTGATGTTTCAACTTTAGTTCGTATTCGCACCGATCACTGGCCTAGCTTAGCCTACATTGATGATTATTTAGAAGCTTTA TACCTGTCATAATAGCTATTGTTTCAGTTACATCGATGCTGCATAAAGATTTGCAATTCTCAACCAGCTCGTGGCAATGT ATGTCTTTTTTTCTTTTGCAATGTACAGTCATACTATCTGTGTACTGTGGCTGTGTTGTTCAGTATCAGTAGGAACACAA TTTTGCTTTATATGCATTTTTAAGATAGATAATTCTGAGACATTTAAATTTATGCCATTTTTTCCATACTGGCAGTTTTG TAGCTTGAGCTTGGTTAGGTAGCTGTTTTGTTTAGTTCAGAAGAAGAGGGTTAAAAGTAAAACAACCCTTCCCCCAGTTC ATGTCGGGTAAACTAAACCCGTTCCTTTTTGGTTAATTATAGCTCCAGTGATATGTATTTAGATGCTTATGGACGGGAGA AATGATAATTTCCTATCTCTGCCCTTTCTTTCGACCTATAGCTCTTGAAGCTTGGCTGTGTTTGTAATTTTGAAATGAAT TTCCAAATCTTTGTAAGCCAACCCCACGTGCAGATTCTGTGATATGCTCATAATCATAATCCAAGTTTTTTCCCACTTAG TGCATTTAGTAGTTTCTGGCTGCCAGAATTGATTTTGAGAAAAAATAAACTGATCCAAACATGCTCTCTCAAAGTTGTAT TTTATCTGCAGTGTGGTGGTCTAGGGGATGCTTTTCAGGTGCAGTAGTATCTGTCCTTACAAGGGTCTTCCTCCCTTCCA ATTGGGTGAAAAGGTATTTCTCTCCC
CDS sequence (LotjaGi3g1v0526500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGCCACCACCGTCGAAGCCTCTCACTCCTCACGACTGGGAAACCCTAATCGACGATTTCCAGTACGCCGGCGA TAAATGGCGCTCTCTCGATCCTCCTCTCACCGATCTCCTCTTCACCTCTCTTCTCCGCAAGGACTTCCCCCTCAACCACA AGCTCCAGCTCCTCATCTTTCTCGACGAATTCTCCACCTCCCTCTTCTCCGACCACCACCACAACCACCTCGACCGCCTC CTCGACGCCCTCCGAACCACCATCCACGCGCCACCCGACGCGGCTCACATAACCCCCGCCTTCAAGGAACAATTCATGGT CTCCGCCACCTCGATCATCATCTGCGTAACCGAAAACGATACGGTTAGGGCTCACACGGAGAGTTTGGTGGAGCTGCTGT TGACGGTTATCAACCGCCCGAATTTCGGGTCGGATCGGCATACCCGATCCATCGCGTGCGAGTGCTTGAGGGAGTTGGAA CGATCGACGCTGTGCTTGCTCTCCGACGTGGCGGGGCACTTGTGGAGCCTCTGCCAGAACGAGCGGACGCACGCTTCTCA GTCATACATCTTGCTCTTCACCACCGTCATTCACAACATCGTTGCTCGGAAGCTTAGTGTTTCCATTCTCAACACCTCTC TTCCTATGATTCCTTTCAACATGCCGAAGATAGATGATTCCGGTGCGGGTTTGAATTACAAGGAGTTGAGGAGGGCGTTG GCGTTTTTGCTTGAGTGGCCTCAGGTGATGACCCCTTGTGGGATGATGGAGTTCGTGTCGATGATGATACCGGTGGCTGT GGCGTTGGAATTGCAGCCCTCCATGCTCAAGGTGCAGTTGTTTGGAATGATTCATTCCTATAACCCTGTGCTTTGCCATG TTGTTTTGACCATGTATGTGCAATTTTTAGATGCTTTTGATGGTCAAGAGGGAGAGGTTTCTCGCAGGCTCTTGTTGATT TCGAAAGAAGCTCAGCATTCTTTGGTGTTTCGCTTGTTGGCGGTTGAGTGGTTGTTGGGGTTCAATCAATTGATTTTCAG TAGAAATGTTGAGAAGACTAAGCCCACCATTGAAGCTTGCTCTGCATTTGGTCCGGCTTTGTTTGATCCGCTGTCTTTGA AGGCCTTAAAGCTTGAACTTCTTGCATTTTGCTCCATGTGTGTTCATGTCTTGAGACTCAAAAGTGGTAATGACTCTCAT CATGTTGAGGATGGTTTCATTGATCCAGTGAAGCTGTTTGAACATGGTCTCCTTTGTGTCTCATCTTTCAAATCGCTGCC TCCGGGGAGCACAGAGATTGCCATTGCGTTCCGTGCCTTCCATAAATTTCTCATTGCTGCTTCTCCTCATGCTGACAATG ATCCTTCCACCACAAGAAATCTGTTGGACTCCATGATATTTTGTACTATGCAGGGGATGCTTGTGAACATGATGTTGGAG AGTCGGAAACTGGTTCCTGTTGTTGTTACTTCCGTTGACCGTTTACTCTCCTGTCAAAAGCATTCTTGGTTGGGTGAGCG CTTACTTCAGAAATTTGATGAGCACTTGCTTCCAAAAGTGGGGATGGATTATAAGTTGGTTTATTTCTTCCCAATATTTG ATAGAATTGCACAGAATCAGACAATACCTCCGCGTGGATTGATAGAACTGCTAACAAATTTCATGATTTTCCTGGTGGAG AAACATGGCCCGGATACATGGATGAAGTCTTGGTCCCAGGGAAGTAGAGCTCTTGGAATTTGTCGAACTATGTTGATGCA CCACCATAGTTCTAGATTGTTCCTTAGACTATCTCGCCTGCTTGCTTTTACTTGTCTCTACTTTCCTGATTTGGAAGTCC GTGATAATTCAAGGACCTACTTGCGTATGCTGGTCTGCATTCCAGGGAAGAAGCTTAGAGACATCCTAAGCGTGGAGGAC ATGATCCTTGGGATTTCACCATCTTCCCACTCAACCTCTTTTTTCAATGTTCAATCACCTCGAGCTTCTCAGAAATTCAA GACAATAAAAAACTTACCATCCTGCATTCACCTGGAGCGTCTGACCCCATTGCTTGTTAAACAGTTTTGGTCTTTGTCGT TGTCAAATTTAGTCATAAGTAACACCAAACCTGCCTATCTTGAGGGCATCAGGGACCTACAAGCCCCTGTTGAGGAAAAA GAATCTTCTGACAGTTCCAATGCACAGATCATTCCTGAAACTGGAAGAATTAATCAACCACAAGAGCTGCTTCGAGTTAT GGATTCTAAAGTTGCAGAAATTTTGAACACATTAAGGAAGTACTTTTCATGCATTCCTGACTTCAGACATGTGCCAGGAC TCAAAGTTAGAATATCATGCAGTTTGAGTTTTGAATCTAGTACTTTCAATCGGATGTTGGGAATCAAGGATGCTGCCACA CCCCTGGAAGAGATAGATTCACTTCCTGCTATATATGCTACTGTGTTAAAATTCTCATCTTCTGCACCTTATGGGTCGAT TCCTTCCTATCATATACCTTTTCTTCTTGGTGATCCTCACAGTAAAGATGATGCATCTCAAAATGGCTCGCTAAGTATTG TTCCAGTTGGAAATGATTCCAGAGGAGAGGAAAAATATAGAGCCCCTGTTATGATTGACTTGGAACCCAGGGAACCGACA CCGGGAATAGTTGATGTTCACATTGAAACAAATGCAGAAAATGGTCAGATTGTCCAGGGTCAACTTCAGGGAATCACAGT AGGCATAGAAGACATGTTTCTCAAGGCTATTGTTCCACCAGACATCCCAGAAAATGCAATGCCTCGATACAAGTTTGACT TGTTCGCTGCGTTATGGGAGGCATGTGGCTCATCCTCCAGCACTGGGCGCGAAACCTTTCAATTGAAGGGGGGGAAAGGG ATTGCTGCCATCAGTGGAACTCAATCTGTGAAACTTCTTGATGTTCCCGCAGCCTCTTTGATCCAGGCAACTGAGTACCA TCTGGCTCGCTTTGTTGTAGGTGTGAGTGGGGAGCCACTTATTGATGTTGTATTGGAAGGGGGAATCATTCAGAATGTCA TTTGGGAAGATGCTTCCTCTGATGCTACAGTTACTAATCCCGATACCGGTCCACTTCGTCTTACTTACAGTGGTGAAGAG CAGCATGAGAAGGGGGTTATTAGCTATAGCAGAAAAAGAAACCTTGGCTGTTTTCTTGTTCTGATATTTCTTCCACCGCG GTTCCATCTCCTTTTCCAAATGGAAGTTGGTGATGTTTCAACTTTAGTTCGTATTCGCACCGATCACTGGCCTAGCTTAG CCTACATTGATGATTATTTAGAAGCTTTATACCTGTCATAA
Protein sequence (LotjaGi3g1v0526500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPPPSKPLTPHDWETLIDDFQYAGDKWRSLDPPLTDLLFTSLLRKDFPLNHKLQLLIFLDEFSTSLFSDHHHNHLDRL LDALRTTIHAPPDAAHITPAFKEQFMVSATSIIICVTENDTVRAHTESLVELLLTVINRPNFGSDRHTRSIACECLRELE RSTLCLLSDVAGHLWSLCQNERTHASQSYILLFTTVIHNIVARKLSVSILNTSLPMIPFNMPKIDDSGAGLNYKELRRAL AFLLEWPQVMTPCGMMEFVSMMIPVAVALELQPSMLKVQLFGMIHSYNPVLCHVVLTMYVQFLDAFDGQEGEVSRRLLLI SKEAQHSLVFRLLAVEWLLGFNQLIFSRNVEKTKPTIEACSAFGPALFDPLSLKALKLELLAFCSMCVHVLRLKSGNDSH HVEDGFIDPVKLFEHGLLCVSSFKSLPPGSTEIAIAFRAFHKFLIAASPHADNDPSTTRNLLDSMIFCTMQGMLVNMMLE SRKLVPVVVTSVDRLLSCQKHSWLGERLLQKFDEHLLPKVGMDYKLVYFFPIFDRIAQNQTIPPRGLIELLTNFMIFLVE KHGPDTWMKSWSQGSRALGICRTMLMHHHSSRLFLRLSRLLAFTCLYFPDLEVRDNSRTYLRMLVCIPGKKLRDILSVED MILGISPSSHSTSFFNVQSPRASQKFKTIKNLPSCIHLERLTPLLVKQFWSLSLSNLVISNTKPAYLEGIRDLQAPVEEK ESSDSSNAQIIPETGRINQPQELLRVMDSKVAEILNTLRKYFSCIPDFRHVPGLKVRISCSLSFESSTFNRMLGIKDAAT PLEEIDSLPAIYATVLKFSSSAPYGSIPSYHIPFLLGDPHSKDDASQNGSLSIVPVGNDSRGEEKYRAPVMIDLEPREPT PGIVDVHIETNAENGQIVQGQLQGITVGIEDMFLKAIVPPDIPENAMPRYKFDLFAALWEACGSSSSTGRETFQLKGGKG IAAISGTQSVKLLDVPAASLIQATEYHLARFVVGVSGEPLIDVVLEGGIIQNVIWEDASSDATVTNPDTGPLRLTYSGEE QHEKGVISYSRKRNLGCFLVLIFLPPRFHLLFQMEVGDVSTLVRIRTDHWPSLAYIDDYLEALYLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 1104 | 1096 | 0.0 | ||
| SUPERFAMILY | 28 | 244 | 217 | 8.92E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Endosomal transport | The directed movement of substances mediated by an endosome, a membrane-bounded organelle that carries materials enclosed in the lumen or located in the endosomal membrane. |
Expression pattern of LotjaGi3g1v0526500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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