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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0526900 |
| Transcript ID | LotjaGi3g1v0526900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase, putative (DUF177); TAIR: AT3G19800.2 E3 ubiquitin-protein ligase, putative (DUF177); Swiss-Prot: sp|P9WL16|Y2926_MYCTO Uncharacterized protein MT2996; TrEMBL-Plants: tr|A0A151TMU1|A0A151TMU1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0526900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94325983..94331081) extracted from Lotus japonicus Gifu genome v1.2.
ACAACATGCACTGAAAAATCATTTTGCGGCTGAAAGATGATGAAAAGAGAAAAATAGCTTGTCAGAACTTAGAAATATAT GGTCTCAACTCTCATGTGTCCTCTAGAAATAAACACGAGCCACACACATGAAGATAAGGTTAAAGTGTTAAATCAAATAC AAAATTGAAATATCCATTTTCTCTCAATTTATCATCCTAACAGTTGTTAAAAGCTGTGTTCAGCTCAGGGAGTGCTATGG AGAAAGCTGGGAATTTGGTATCCTCAAGGAACTTCAACCCAATATTCAATCCATGCCACCCTGCTGCATCCAATTCCAAG GTCAAAAGCTTCAGGTTGCTCTCTCAATTGCACACTTACAACAACAATTCCAGTATTACAGCTTCTACCAAAAGAAAGGA TAACTTGCACTCTCCATTGGTAACTAACTTTTCTCTCCCATCTCTTTCCTTTAGGTCCTTTTGGCTGTTTGGAATAGCTC ATTTTATAGTATAAATGCTTATGCAAATATTTGGGAGAGCTTAGTATATAGTTTACAGTCTTCCTTTAAGTTGTTTTGCG CCTATTTTTATAAGTTGTTCAGATTAGCTTATGAATAAGAACTTATATTTATTCATAACATGTTTTCAGCTCATTTTAGT AAGTTTCCAAATTAGCTTATGGATAAACGCTTATATGATAAGAGCTTATTGTCATAAGCGCTCTTAGTTCCGCGTCTTAT CTAAACCCCACTTTTCATGATCTTGGCATGAATTTTCTTATATCTATGATCCTCTCATAAAAAATAAATGTCTGTCTGAT TTTAATTCTGGGAAAGGGAAAGCAAACTCCTCTATTTTGCCTCCTATCTTTTCTCTTGAACATGTTGAATATCAAATAGA AGTTTCAATGAACTGAAGTTTTATAAATACTGTGTTGGGATATCTGTTGGCACCAGTACAAATAGATGTTAGCCGACACT TTAAGACAAAAAATGAACAAGGCTCTTCTTATGGATCGAGATTAAAGCTTGTTTTATTGCACTTAAGTAGTATCCCAACA CAAATTTGGATATTTTGCGGTTGAATTTTCCTAAATTCACTGAAGTCACTGTTTCATAACCGTTTGTTCAAGATCTGGCG TCTTATATTAAAAGAGATTGGTTATACATCTGAAATTCTAAACTATCCGATCTATCCAACGGCTGATTGTAGTGAATTTC GGAAAATGTGACTGCAAGGAAGTTGCATCCTCCAAACACACACTATGTGCTGGAAATAAGTTAGAGATACTTTAAAGGAC TTTCCAGCCAAGGGATCCATCAAGTTTCTCTTACTTTTTCTCTCAAAATCCCACATGAAGTGCTTTCAAATCGCCGATTT CCAAACATTCCTGTAATAAGTGTAAGTTCCTTTTACTATTCCTTTTGAAATCCGTGTGAATATGCTTTCACATGGAATTT AACAGGTTCCGACATCTAGCCTAGAATAAGTGAGGTTAATGTGCATAACATATGTATGTTGTAAATCTTGTAACACAGCT AATGTCTAAGATTTATTTACTATTCTTCCTACAAAGTAGTTTGCAGTTAGTCATTTTTTTAATGGTATTTGCTCTGGGAT CCAACCCAGATTGGGAAGAAGAACACGAGTAAGGCTGCTCGCCGTCTGATCACAATATCACCAGGCGATGGCAAATATCA TGAAGAATGGACTAGTGACTATCTCGTGTCTTTGCAAGACCTGCAGTTGCAGGACTTGATTGAAGTAGAAGATGATCCAA ACAAGGATGCAGAAGTAGTCATCAACCTCTCCATCCAAAAGGTAGTTCTGCTTCCAAATATTTTATTTTGATAAGTGAAT GAAAAACTGAGATTTACATTGTGATTGTAAGGGAATATGAAACAAAAACAAAAGTCTTATTTCATTCAGTGAGGTCCGCT ATCTAGATCACTGATTCATTTTCATGATATCAGTCAGTTTTACATCGGTTACCGAAAACCTAACATAACCTGCCTCCTTT ATCCGGGCTTAAAACTGGCTATAGAAGCAAAATAAATGTTTGTGCATTTTTTCCCCTTTTTATGTATTGAATTGTACTCT CTATCTTCATTGACTATAATGCTCCCAAATTTCAAATTAATTGTTTAGTCACTTGTCAACTCTTCTAAATGGTGATACCA GCATGCTAGCTTTGGCTTGTCGGTGGATGGAAGAGTCACAACATCCTTCACTAGAAAATGTAGCATCTGTTCTTCCCCAT ATTGCCGACAGGTATTTCTTTCATCATGAACTGATACTAATTAATTTCTGTATTTCAGGTTTCTTACTTGCCCAGGGAAA TGAAGATGTCTACTTTCTTATTCAAATTCTATGCATGAGTTTTTTTTATTGTAGTATCTTTGATATTGTGAATTTGATCT CTATCTTACCCTCTTGTGCTTCTTTTTTCAGATTTGTAAGACCTTTTATAAAATATGTATTCATAAAACACATATAGTAG AAAACCAACTTGAAGTTCAAAACTTGAGCTAGTACTTGTTGCGAGGACTTTTTACTTGATAACAAGTCATTGTGATTGTG CCTGCAGGATTAGTCTCATAGCTATAGTCATGAGTGTATTTGATCAAAGACTAGAATATCATGAAAGCCAATCATTTATT GAAGTTTGTGGGCAATTAATTAATGAATAATTTGGTGCAAGTCAAAATTAAGCACATTAAGAAGAAGGCTAGACTAAGCA TTTTTTGGAACGACTAAGTACACAAGTACATATAAGAATATCTTGGAATAAAAATGTGTTATTTGGCTTCTAAATGTAAT AGCAATTTGATGTTATGCTTCCTATTTGAATATCATGCATATTATCCATACACAGATAATAATTCTTCAATTTATGTATT CTAGGCGATATCCTCCAAATTGTGATTCTGTGAAATGCTGTTTTGATGTGTCCTGCTAAATTTATTCTATGTGAATAACT GTGTTCCTTAACTAATAATGGCTACAGATTGACGCAAAATTTAATGTATGGGTTCTCATGGAAAGTAGAGATAATCGCAA GATACAGCAGCTACCTGAAATTGGAGGTGACCCTTCTGTAAGTCTCTAAGCTCAGTTAGTTTCAATTTTTGTCTCTATTT TTTGTATATAGATAGGAATGCTCTAAAATACTTACCATCTAAAATCTAGCTTGTGCTTTCTTCTGTAGAACACCAAAAAT CATTTGAACGTTCCAAAAGAATACATTTATGGTTAAACTCATGTTCAAAGCAGATTCTGTTCTGTGAATGTTGTTGCCAA AATAATAAAGGTTAACCTAACACAGCTCTTCATGCAATACAGGTGATGTATGTTAGACCAGGATATGAAGTTGATCTCGA TTCTCTTGTACAAGACGCCATCCGATTAAACTCCTCAGTAGAAGTATATTAAGCACAATTAATCATGATTTATAAGTTAT GTTTCAAAATGCTTACAACTTACAAGTTGTACCCATAGTTTTACATTTATATTATTTTTTGCAGGACACATGCTCGGAGT TATGCGAGAAATCTGAGTATACCATACAATGTAAGCATTTGTTATCTGAAAACTTCAAGGCCACCAACACGGCCATGGTT GATTACTTTACTTTCTTTTACCACCATTTTCTTCAATACAAGGAACTAACAAAACAACTTTAAAAAAATCAACAAAATCT TACCAAAGGTTGTTTTAATTTTCCAGTTACAACTGGACAAAGTGAGGCTTCTATAGACAGAAGGTGGTCTAGACTATTGG AACTGAAGAAAGCTTTATGATTTATCATGGCACAGAATAAGAAGTTTCATGTATAGAATAATCGTCAGTTCACGTATAGA TTGTAAGTATAATGAATTGATGAACAATATTCTCCTTTTTGAAATGTACACCATTTCTTTTCTATTCTTTTTTATACTAA ATTGTCATAGCAATTTGGACGTGAAGCGCCGAAGGCCAGAGGTCTACCACAAAGTTTCGACCTAGGGTCACTTTTAACCA CTACAACAAATAAATGTACACCATTACTGATGAGTGCTGGGATAATCAAGTTTACATAAATCTGAGTATGAACACTTCTG CAGACAGTGGACAATATTAATTTATGAAACAGTTCAGGTTTTTGGACTCTCAAATACAAAGGAGATTCTTTTGAAGTTTT ATTAAACCATGACTTTTCAAGTCTCATGCATCTATTCTATTATAATATATTAATTCTGAAGCGCAAACCATAACGATACC ATATAATCTCTTTACTTTTATCTAAATCTTCCATGTCAGCATTTAATCCTGGTTGGCAATCAGAAAATATGTATGCTTCC CTCGACAGTAGCTTGCTGACTGTGATTGAATCATCTTTGCACTCACTATTGGATCTCTTTTCAGGATTTATACTTTGGTT CACTTTTTAGGCTATTGAGCAAACCATACATTTACATGTACCCAATAGGCAAGAACAGTATGCAACATGTGCTAATGGCT TCATTTTCAATTTCTCAATAATTTAGGATAAATGATTAATTGAATTATCTTTTTGCCTTCTCTATCTTTCTCGATGTATT TTTATCTTAATACAAGCAGTTTCTCTTTATCTCTTCATTCTTTTTAATAGCTTTACGTTCGGTTTGCAAAATAAATGGAC ACCACCACGGTGCCTGAAGTAATTCTCCAATCCTCCGTCGAGCAGCGGAGGATGCAAGTGATGGACCTCAGCACGTACTG CACCAGAAGCAGCAGTATGTTTAGTACATAAGGTGCAGTCCTTGAGGCCGTCAGGGTTACAAGCATGTTGATGCTGCTGC TGCATATGAAGTGGAGCAGTCTGTAGGAGTAGCCATAACGCCTTAACAGAAGCACTCCAACTTGGACTAATTGTATCCAA AGATGACCTGTTTGTTAATTCCAAAGTGTGGGTTATTGACAACCATCCTAAACTCTTTGTTCCTGCTCTGTAGAAATTTC TAAGGTGATGATCACAACTGCTTTAACTTTAATTTATTAATTGGAATGATCATTTGTATGATTTTGTACATCAATTTATA CTTCATCATTTAATTTTTAAAAAGCAAAGCTGATTTTCTGTTTATACAACTTAACCTCA
CDS sequence (LotjaGi3g1v0526900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAAGCTGGGAATTTGGTATCCTCAAGGAACTTCAACCCAATATTCAATCCATGCCACCCTGCTGCATCCAATTC CAAGGTCAAAAGCTTCAGGTTGCTCTCTCAATTGCACACTTACAACAACAATTCCAGTATTACAGCTTCTACCAAAAGAA AGGATAACTTGCACTCTCCATTGATTGGGAAGAAGAACACGAGTAAGGCTGCTCGCCGTCTGATCACAATATCACCAGGC GATGGCAAATATCATGAAGAATGGACTAGTGACTATCTCGTGTCTTTGCAAGACCTGCAGTTGCAGGACTTGATTGAAGT AGAAGATGATCCAAACAAGGATGCAGAAGTAGTCATCAACCTCTCCATCCAAAAGCATGCTAGCTTTGGCTTGTCGGTGG ATGGAAGAGTCACAACATCCTTCACTAGAAAATGTAGCATCTGTTCTTCCCCATATTGCCGACAGATTGACGCAAAATTT AATGTATGGGTTCTCATGGAAAGTAGAGATAATCGCAAGATACAGCAGCTACCTGAAATTGGAGGTGACCCTTCTGTGAT GTATGTTAGACCAGGATATGAAGTTGATCTCGATTCTCTTGTACAAGACGCCATCCGATTAAACTCCTCAGTAGAAGACA CATGCTCGGAGTTATGCGAGAAATCTGAGTATACCATACAATTTACAACTGGACAAAGTGAGGCTTCTATAGACAGAAGG TGGTCTAGACTATTGGAACTGAAGAAAGCTTTATGA
Protein sequence (LotjaGi3g1v0526900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKAGNLVSSRNFNPIFNPCHPAASNSKVKSFRLLSQLHTYNNNSSITASTKRKDNLHSPLIGKKNTSKAARRLITISPG DGKYHEEWTSDYLVSLQDLQLQDLIEVEDDPNKDAEVVINLSIQKHASFGLSVDGRVTTSFTRKCSICSSPYCRQIDAKF NVWVLMESRDNRKIQQLPEIGGDPSVMYVRPGYEVDLDSLVQDAIRLNSSVEDTCSELCEKSEYTIQFTTGQSEASIDRR WSRLLELKKAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 250 | 250 | 1.2E-97 | – | |
| Pfam | 133 | 248 | 116 | 1.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0526900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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