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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0528100 |
| Transcript ID | LotjaGi3g1v0528100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT3G18610.3 nucleolin like 2; Swiss-Prot: sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2; TrEMBL-Plants: tr|I1LPJ9|I1LPJ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0528100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94505105..94511454) extracted from Lotus japonicus Gifu genome v1.2.
ACAGCATCACTAGTGAGTACCGAGTAGTGACCCGGTTTGGTTGCGCCGCGAAGCCCAAAACCCTAACCCCTCACCGAGAC TCACGTATAAAGCCCGAAGCAGCCGTAAGCTTTTTCTCTCACAAGCTCTCAGCTCTGCTATTTCACAAAACCCTAATTCC CTTCAGGGTTTTGCAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTATCGCCGCTTCGAGTTAAGATGCCTA AGTCAAGCAAGAAATCTGCCACCAAGGTATGTGTGTTTCCATCTCTCATCACGTTTTTACTCTTGCTTCTTCCATTGCTC TGTTTTTGCTGATTGATTTTTGTTTTCGTTGTTTTGAAGGTTGAAGCTGCTGCTCCTGTAGCTGCGGCGCCCAAGTCTGC TAAGAAGGGTATTTCATCTTCATCTATTTTGCAGCTTCTACGCTATGCTTCCATGTTTTGAAAAATGAATTTTAATGTCT AGTACGAATTTTGTTTAATTATTTTGGTGCATGGGTTCTAAGTATTGGAGATTGTTTATCTTTTATCTATTGATCCGCAT ACAGCTTTTTCTTCATGTTTTGATTTTCTGGAAAAATGTTGCAGCCTGTACAAATTTTGGTTTTTTGTTTACGGGTTCTT AACAATGGTGTTTTTTTGTTTTGTTTTATCCATGGTTGTGCAGACAGCTTTTACTTCATGCTTTTTCAAAAAATTACATG TTAGTTTTATTTTTATGTGTTTGAAATAATGGAGGTTGTTTATTTGTTATCAATGGATGTGCTGAAATTTATTAAAAATG AATTGTCAGTTGAGTTTTCAAACTTGGTTCTTTGATTTCTTTAGTTATTTTGGAAGTTGGTGATTGATTTATTAGCCAAA CTATTGAGGCCATTTAGAGTTTTGATGATATGTGTATGTATTTTTTTAAATGAGGGTTCTGGTAATTGATTGTTTGCTTG GTCTATTTTGATTATGATATTCAGCCAAGAGGGCTGCTGAAGATGAGGTTGAGAAGCAAGTGAGTGCTAAGAAGCAGAAG ATAGCTGAGGTTGCTGCAAAGCAAAAGAAGGAAACAAAGTTGCAGAAGGTTAAGAAGGAAAGTAGTTCAGATGATGATTC TTCATCTGAAGATGAGGTATTGTAATTGACTATTTATTTGTCTATTACATAGTCATGTTAAACTTCATGTCGTGTATTGA TTATTTTTTCTGTAATGGCTCAGAAACCTGCACCCAAGGTTGCTCCTCTGAAGACCTCTGTGAAGAATGGTACTACCCCA GCAAAGAAAGCCAAGCCAGCTCCCAGCTCAAGTTCTTCTGATGAAGACTCCTCTGATGAAGAAGAAGAAGTGATTGCAAA GAAGCCTACCAAAGTAGTGGTTCCAAAGAAGGAGGAAAGTAGTTCAGATGAAGATTCTTCATCAGATGAAGATTCTTCAT CTGAATCTGATGATGAGGTATTGCATTGCACATAGGAATCATTAATTATGTGTTTTAATGTACTTTTCAATTTTTATTTT TGTTATAATTGCCTCTCTTCATGGTTTTCTTTTGTTGGATTCAGAAACCCGCTGCAAAAGTTGCTGTTCCTGCTAAAAAG GCACCTGCTAAGAATGGCTCTGTGACTGCCCCGGCAAAGAAAGCCCAGCCTGCTCCCAGCTCAAGTTCTGAATCAGAGGA TGATGACTCCTCTGAGGAGGATGAACCGAGTGCCAAACAACCTAAGAAAGAAGTTGCTGTGAAACCAGCAGTGCAAAAGA AAAAGGAGGAAAGCAGTTCTGATGATTCGTCCTCAGAGTCGGAAGATGAGGTATTGTTTATGATTATTCATTGTTTGGTG GTATCAATAAGATCTTAAATTTCCGTGTAATGATAATTATTTGTTATGTTTATTATTCCCTTTTTTCATGCATTACATTC ATTCTGTGTACTCAGAAACCTGCAGTGAAAGTGTCAGCTCCTTCCAAGGTTGTCCCTGCAGCAGTCAAGAATGGGGCTGC AGACTCTGATAGTTCTGATTCTGATTCCTCCTCTGATGAAGATGACGTAAGTCATGTTTCTGATTTTTGTTTTGTTATCA AGTTTTTTTTGTCTTATTAAAGTAGGGTTATTCATGAAGTTTACTCCCCAAAGTATTGTTGTTTTCAGACTCCATGTCTG CTAGTAGCTCATAAGATGCAAGTATTTGTTTTTATTTACTCTTTAATTACTTTTTAAATCACCATAAATGTCTTTCTGGT ACCAGGACAAGAAAAAACCTGCCACTAAGGTTGCCAAAAAACTGCCTGCAGCTGCTCCAATTAAGAAGGTTGAGAAAAGT GAAAGCTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGAAAATGTATGTTTGGATTATTGGCTGCAAGGAATCATCTT TTTATTTATGAAATAATTTTTGAAATCATATGTTCTCATCATGTAATTGGATGTCAGGATTCAAAGCCTGCCACAACTAC TGTGGCCAAGCCTTCTGCTGTTAAGAAGTCAGCTAGTAGTGATTCAGATGATGAGGTATATAGATCTTGTTGGTTTCAAC TTTTTGACATTTTGCGGTTAGTAATTTCTGTAATCAACTTTTTTACAGGACTCATCTGACAGCGACTCTGAGGTTAAAAA GGTGCGTTTACGTGTTTTAGCTGGAATTTGGTTTGCATAACGTGAAACTTATTTATTGATATGGAAACTTGATTGGCTGT AGGGGTATTCACTTTTCTATTCGTAATCAACTAAAATTTTGTGATGTCTTCTAACAGGATAAGATGGATGTGGATGAGAG CGACAGTTCAGAGGATAGTGATGAAGAAGATGAGAAATCCACCAAAACACCCCAGAAAAAAGTAATCTTATTACTCTATG AATCTTATGGCAAGTTTATTTTGATTCATCTTGTTTTCTGTAATAATATAATCCTCTTTTGTGATCACCAGGTTAAAGAT GTTGAGATGGTTGATGCCTCATCTGGAAAGAATGCTGTATATAATTGACACCTTTCCTTGTTTACTTTTCTATTTATAAG GCTTTCAAATCAGTGATATGATTTAATTATTGTGTTCTTGCAGCCTAAAACCCCAGCTGCGCAGACAGAAAACGAAGGGT CAAAGACACTTTTTGTTGGGAACTTGTCATTTAGTGTGCAGCGATCTGATGTGTATGTATTTGGCCCATTCACTCGCTTT TTCAGTTATTTTGTTTAATATTTATCTAATTTAGTAATTGTTCAGGGAAAATTTCTTCAAAGATTGTGGAGAAGTTGTTG ATGTCCGTCTCGCAACAGATGAAGATGGCAGATTTAAGGGCTTTGGACATGTTGAGTTTGCAACAGCAGCTGCAGCCCAG AGTGTGAGTTTTCAATTTTTTAATATATTGACCTCCTCAAAAACAATTTAGATATATGCTGATCTATAAATTTCTCAGAT ATGCTTGAGTTGGAAAACATTTCTTTTTGATGAAATATTCTTATTTCTAGGATTTTCATTGTAGGGATTTATTGATTCTG TTCTTATTCTGAACAATATGTTGGTTTTTTTGTTATTCAAGGAACTATTCTTCTCTATCTCTGCATTCTAATTTATGCTT GAGTAATGAATATTTTGGGTCTTATCTCCCATGCCCCGCCCCACCATTTTAATGTGTATTTATGTGCTGTTTATGCTGTA CAGTGCTTCATCGATTTTGTGTATGTCTCATTCATTTGTCTTTTTTTAAATGATAGGCTCTTGAGTATAATGGGTCAGAA CTGCTGCAACGTCCTGTTCGGCTTGATTTAGCTCGGGAAAGGGGTGCATATACCCCTAACAGTGGGTAATTATTCTCTAC ACATCTTACTCCTACTTTATCATCATGTGCTGCCACTTATTCTATTTTCTTTTTCCTACTCATTGTAGCGCTGCAAACAA CTCATTCCAGAAGGGTGGAAGAGGCCAGTCTCAAACTGTATTTGTGAGGGGCTTTGATAAATTCCAAGGGGAAGATGATG TAATTTTGTTTGTTTTATTAACCGGTCCTTCAGCTCAAATTCATTTCATGATTTGTTTGATGTAATTGTTCATTCAGATA TCTTAATTTTTTATTGCAACTTATTAAGCTTTCTTTATTTCAGATAAAATCTAGTCTGCAGGAGCATTTTGGTTCTTGTG GGGAAATTACTAGGATATCAGTTCCTAAGGATTTTGAATCTGGGAATGTTAAGGGGTATGTTTTTTGCACAATTCTGATG CTGCATACATAATATTATGTGCTCTTGCTAGTTTTATTTCTTTCTCTGCCAATGATTACCTGCTTTCCTTGTTTCATTCA TTTCGTATGAATGTTCATACATTTTCCATTACCAATTTGCAATGGCAGGGTCTTACTTTTTTGTTCCCCCTATTTACAGG TTTGCTTATTTGGACTTCTCTGACACTAATAGTGTGAATAAAGCTCTAGAACTTCATGATAGTGATCTTGGAGGTTTTAC ATTGGCAGTAGATGAAGCTAAACCTAGAGATAATCAAGGTTCTGGCGGTAGAAGTGGAGGTGGAAGAAGTGGTGGCGGAC GTGGAGGCCGATTTGACAGTGGACGTGGTGGTGGCAGAGGCCGGTTTGGTAGCGGTGGACGTGGTGGGGACAGAGGTGGC CGAGGTGGAAGAGGTGGCGGTGGAAGGGGTGGTCGTGGAACACCCTTAAGAGCGGAAGGTATAATTCATCTATATTTAGT ATTCCTTGGGCTTGTTTTTTGTTCATTTGGTTTTGCAATATGCAGTGCTTATAAGTTATAAGATTTAGACCATTAATTGA ATTAGTGAGATCGGAGACAGTATATAATATAATGAAGTGAAATCGTAAATGAAATCGTAAATAATCTATATTTAATTATA ATAACTCATAAATAACCCTGTTTTTTTAATTATAAAACAACATTTTGCTTAATAATCATACTTAAATGATCATTTACCTT GACGTATGAAGGACTTTGTATTGCAATGATACTTCAATTGGTCATTTGTTTAGATAATCACATCTTCAATGTAATGTACC CTTCACAATTCTTTTTGAAAGTTATACGTAGTATTTTGACGTTTGCAATTCATCAATTTCTTTATGTTTAAATTTAACAT GTATTCTTGACAAGTATTAACCACTTGACAAGACATTTTTATTTTTATTATTTTTAATGTAGAGTTTTTCTTTTTTCTTT TTTTTTTCATGTTTTATGTTGGTATAATTTGAAGCCTATCTCCTTTGACTAACATAAATTATTGTAATGATCCAACTTTG GTATACATAACAAGCAAAACAAAAACATGTCTCTTTTTCCTAAACAATATTCAATTATATTATGTGGATTATGATCCTTT CACATGGACATTCTTCATATTGAAATTGTGTTAAACCTATTTAATACATACATATGATAAGGGATATATCAATTTCAACA TTAGAAAACATTTGTGATTTACTGATTATCCGCACCCTTGCTATAATTTACACATCTAATTCTTTATTTTATTGTTTTCT GACTGTTGATTTTTCTTTGAATTTTAGGTAAGAAGACTACTTTTGCTGATGAGGACTAGGGATGTTGGCTGGCTTCCTTG CAGCATTTATTATATCTACTCCTTATTAAATTTCTATTAGTTTTTTATCCTCAGTTTTGATAATTGTATGAGATGATTAC TGTATGGAGTATTGGGAAATTTTTGTGTTGGATAATATGGATTTAGTCCTGTGGCTATTTAAACTCAGCAGATTTTAGCC TCATTACTTAAATGCCATAGATATTTTGCTTGAAAGATATTGCTTAAGGTGTATGCCTAAATTTTTAATTTTTTGTTCCT TATTACCTCACCTTGTTGGGAACACTATTGATTCTTCTATAAGCATGCTTTCTACCCTTAATGTGGTTTGGAGTGTGTGC ATAAACTCACTTTTCAACACATTTAATCAATGAAGAAAATGTGATCCACTTTACTTTGATAAACACACCGAGGGTTTTGG CTTTTGGTTTTGGTTCTTCAGTGTGTTGAAAATTTGGCATGTTTACTTTCTAAAATTTATCTTAAACTTTGACAAATTTA AGGTTTTTTGTATGTTCGGTGGTCATTAAAATAGAATATAATAGGTTTCTTCGAACAACTGCACTCATAATTCCTGGTTG GTCTTTTATGTCTCGGGAACGACCGTAATTAAAATGTAATCATGTTATGTTAGTTTAGACTTGGCAAACATGAATTATGA GCGCTCTATTAGGAGTAATCATGTTTTATGTTTTTAAGATTTGCAAAATCTAATTTTCTCTATTAAGTGTGTACTTTGCG TTTTTCACAATCTTTTTAATCGTGTTTTTA
CDS sequence (LotjaGi3g1v0528100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTAAGTCAAGCAAGAAATCTGCCACCAAGGTTGAAGCTGCTGCTCCTGTAGCTGCGGCGCCCAAGTCTGCTAAGAA GGCCAAGAGGGCTGCTGAAGATGAGGTTGAGAAGCAAGTGAGTGCTAAGAAGCAGAAGATAGCTGAGGTTGCTGCAAAGC AAAAGAAGGAAACAAAGTTGCAGAAGGTTAAGAAGGAAAGTAGTTCAGATGATGATTCTTCATCTGAAGATGAGAAACCT GCACCCAAGGTTGCTCCTCTGAAGACCTCTGTGAAGAATGGTACTACCCCAGCAAAGAAAGCCAAGCCAGCTCCCAGCTC AAGTTCTTCTGATGAAGACTCCTCTGATGAAGAAGAAGAAGTGATTGCAAAGAAGCCTACCAAAGTAGTGGTTCCAAAGA AGGAGGAAAGTAGTTCAGATGAAGATTCTTCATCAGATGAAGATTCTTCATCTGAATCTGATGATGAGAAACCCGCTGCA AAAGTTGCTGTTCCTGCTAAAAAGGCACCTGCTAAGAATGGCTCTGTGACTGCCCCGGCAAAGAAAGCCCAGCCTGCTCC CAGCTCAAGTTCTGAATCAGAGGATGATGACTCCTCTGAGGAGGATGAACCGAGTGCCAAACAACCTAAGAAAGAAGTTG CTGTGAAACCAGCAGTGCAAAAGAAAAAGGAGGAAAGCAGTTCTGATGATTCGTCCTCAGAGTCGGAAGATGAGAAACCT GCAGTGAAAGTGTCAGCTCCTTCCAAGGTTGTCCCTGCAGCAGTCAAGAATGGGGCTGCAGACTCTGATAGTTCTGATTC TGATTCCTCCTCTGATGAAGATGACGACAAGAAAAAACCTGCCACTAAGGTTGCCAAAAAACTGCCTGCAGCTGCTCCAA TTAAGAAGGTTGAGAAAAGTGAAAGCTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGAAAATGATTCAAAGCCTGCC ACAACTACTGTGGCCAAGCCTTCTGCTGTTAAGAAGTCAGCTAGTAGTGATTCAGATGATGAGGACTCATCTGACAGCGA CTCTGAGGTTAAAAAGGATAAGATGGATGTGGATGAGAGCGACAGTTCAGAGGATAGTGATGAAGAAGATGAGAAATCCA CCAAAACACCCCAGAAAAAAGTTAAAGATGTTGAGATGGTTGATGCCTCATCTGGAAAGAATGCTCCTAAAACCCCAGCT GCGCAGACAGAAAACGAAGGGTCAAAGACACTTTTTGTTGGGAACTTGTCATTTAGTGTGCAGCGATCTGATGTGGAAAA TTTCTTCAAAGATTGTGGAGAAGTTGTTGATGTCCGTCTCGCAACAGATGAAGATGGCAGATTTAAGGGCTTTGGACATG TTGAGTTTGCAACAGCAGCTGCAGCCCAGAGTGCTCTTGAGTATAATGGGTCAGAACTGCTGCAACGTCCTGTTCGGCTT GATTTAGCTCGGGAAAGGGGTGCATATACCCCTAACAGTGGCGCTGCAAACAACTCATTCCAGAAGGGTGGAAGAGGCCA GTCTCAAACTGTATTTGTGAGGGGCTTTGATAAATTCCAAGGGGAAGATGATATAAAATCTAGTCTGCAGGAGCATTTTG GTTCTTGTGGGGAAATTACTAGGATATCAGTTCCTAAGGATTTTGAATCTGGGAATGTTAAGGGGTTTGCTTATTTGGAC TTCTCTGACACTAATAGTGTGAATAAAGCTCTAGAACTTCATGATAGTGATCTTGGAGGTTTTACATTGGCAGTAGATGA AGCTAAACCTAGAGATAATCAAGGTTCTGGCGGTAGAAGTGGAGGTGGAAGAAGTGGTGGCGGACGTGGAGGCCGATTTG ACAGTGGACGTGGTGGTGGCAGAGGCCGGTTTGGTAGCGGTGGACGTGGTGGGGACAGAGGTGGCCGAGGTGGAAGAGGT GGCGGTGGAAGGGGTGGTCGTGGAACACCCTTAAGAGCGGAAGGTAAGAAGACTACTTTTGCTGATGAGGACTAG
Protein sequence (LotjaGi3g1v0528100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKSSKKSATKVEAAAPVAAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQKKETKLQKVKKESSSDDDSSSEDEKP APKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEEVIAKKPTKVVVPKKEESSSDEDSSSDEDSSSESDDEKPAA KVAVPAKKAPAKNGSVTAPAKKAQPAPSSSSESEDDDSSEEDEPSAKQPKKEVAVKPAVQKKKEESSSDDSSSESEDEKP AVKVSAPSKVVPAAVKNGAADSDSSDSDSSSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSDEENDSKPA TTTVAKPSAVKKSASSDSDDEDSSDSDSEVKKDKMDVDESDSSEDSDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTPA AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRL DLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLD FSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQGSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGGRGGDRGGRGGRG GGGRGGRGTPLRAEGKKTTFADED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 407 | 407 | - | – | |
| MobiDBLite | 26 | 83 | 58 | - | – | |
| MobiDBLite | 89 | 110 | 22 | - | – | |
| MobiDBLite | 119 | 140 | 22 | - | – | |
| MobiDBLite | 203 | 243 | 41 | - | – | |
| MobiDBLite | 317 | 332 | 16 | - | – | |
| Gene3D | 328 | 491 | 164 | 4.9E-30 | ||
| MobiDBLite | 333 | 359 | 27 | - | – | |
| PANTHER | 351 | 612 | 262 | 3.9E-103 | – | |
| PANTHER | 351 | 612 | 262 | 3.9E-103 | – | |
| MobiDBLite | 369 | 387 | 19 | - | – | |
| SUPERFAMILY | 401 | 506 | 106 | 1.07E-26 | ||
| ProSiteProfiles | 409 | 485 | 77 | 17.984 | ||
| SMART | 410 | 481 | 72 | 1.3E-22 | ||
| Pfam | 411 | 478 | 68 | 1.7E-16 | ||
| Gene3D | 492 | 608 | 117 | 4.4E-17 | ||
| SUPERFAMILY | 508 | 622 | 115 | 6.52E-22 | ||
| ProSiteProfiles | 509 | 590 | 82 | 14.846 | ||
| SMART | 510 | 586 | 77 | 4.8E-13 | ||
| CDD | 510 | 588 | 79 | 7.84928E-37 | ||
| Pfam | 527 | 583 | 57 | 6.8E-9 | ||
| MobiDBLite | 585 | 664 | 80 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0528100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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