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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0540900 |
| Transcript ID | LotjaGi3g1v0540900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PLATZ transcription factor; TAIR: AT4G17900.1 PLATZ transcription factor family protein; Swiss-Prot: sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808; TrEMBL-Plants: tr|A0A151TM65|A0A151TM65_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0540900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95804191..95807216) extracted from Lotus japonicus Gifu genome v1.2.
TACTTATCACAAATAAAAATAAAACAGAAATCCAAAAAATTGTAAAAAATAAATAAAGAAGCAAATGAAACGGAAGGTCA CCTCATGAGTTCCTTGAAAAAAACGCACCCATACCTCTGGTTTGGGTTCGGAGTGAGGTTCGGAACCAGGTTCGGTTTTG GACTTTGAACTTGGATGCGATGAGCAAGATAAGCACTTAGCCTCCATCACCCGCCACTACAAAAGCTCATCCCCACTTCC AAGTTCTAATCTTTTCCCATTTTCCCTTCTTTTTCTTCATCAAAGTTCCCTTTTTGCATCCAATTCAGTAGAGGAATCTT AACAGACATCAAAATCCAACACCAAAAAACATGGTCAGTAACCACAATCAGTGCCAACTAATGGGGTGCCTTTGTTTTCT TCTTTTTGATCAACCCTTTTGATTTCTTGTTTCAAAGTTTGTTTTTTCAATGGTTGCATTTAATTTTTGACTAATTGTTT TTTTTTTTTGGTTTCTGGGTGTGTTGGATTAGGGAGGTGGAATCAATGAGGAAGGAGGAGGTGTTGTTGCTGTGGGAGAA AGGGAGGAGGAGAACAAGTGGCCACCATGGCTGAAACCTCTTTTGAAGACTAACTTCTTTGTTCAATGCAAAGTCCATTC AGATTCCCACAAGACTGAATGCAACATGTTTTGTTTGGATTGTGTGAATGGGGCTCTTTGCTCTGCTTGTCTGGCTTCCC ACAAGGAACACAGAACAATTCAGGTACATGTTTAGATGAAAAAATAACCAATCTTTTTTATCGGTGAATTGAATTGTGTT TGGGATTTCATGACTCAATCAAGCCTGTTTGGAAATTGTTCTGCAGTTGATTCTAAAGCCAGAATCAATTTTGGGGAGAA GCTTTGTGAGTAGCCACAAAATTGATTCTGGGAAAAAATAAGCTCATCCAAACATGCTATCAACCAGAGATTTGGGTGTC TCTATTCTGATTGTGTAGTTCCCTTAATTGTTATAATCCAATCAATGCTAAACTTTGCAACTTGCAATATCCCTAAATCT CTGCATTTTGATTTTTTTTTTCATTGAATCATGGTTTATTACTCAATTATATTGTCCATTGTTTCTGCATAGATTGGCAA TTTTTTAAAAAAATGAATTTTGGCATTTTCTTCTAGCTAGAATGAGTAATCTGGTTAGTATCTTTCTGACATTTTTTTGG TGGTTGTTAATTTTCAAAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTGTCTGAGATACAGAAATTTCTGGACA TAGCTGGGGTCCAAACTTACATTATAAACAGTGCCAAGATTGTGTTTTTGAATGAAAGGCCTCAACCTAGGCCAGGAAAA GGGGTCACCAATACCTGCCATGTCTGTGAGCGCAGCCTACTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGGTACA TACAATTCAACCAAATTTCTTTGTAGCCCTACATTTGACCAATGACTGCGTGTGAGTTGGATACTAGTTGAGTGCAACTT TATTAGACTTTGATCCAATCCATGAGAAGTGTTTGTTTCATTTTTTATCTTAAAATGAGTGCTAATTTCTGTTTGCTCAG ATAACTAAACATAGCCTGCTATATGGAAAATTTTCTATCAAACAGTTGTAAAATGGAATTCAAAACTAACATCTTTGAAT TACATTAATTGTAGCAAAACATGGTGAGCTGTGTTTCTAGAATTGTAGAATTGTTGTACTTGTATGTAAAATGAAAACAT TGTAACTACCACCTACTACTTTTCTGTATAAAGTACATGAACATTAAATGTGTACTTTCTATGTTTCCTTTGAGGATGTA AAAAAATGATGAGGAATTGAGAATTGGTGGATATGATTGAAATGCATGTTTGGAAATCCTTTGACAATTGATTCTGAAAC CATAATTGATTCTGGGGAAACTCTTATGTGAGCCGCTTCTAGATTTCAGAGTTGATTATGAAAGAGAAGCTGATCGAAAC ATGCTAGAAATTTATGAATGACTTATTCAACTTTTGAATTTTCTTTGCAGATTGTTGGAACCTCCAAGAAGTTCAGGAAG AATAAAATGTTAGGTGAGACAGATGGGTCTGATGTTGAAGAATCAATGAGTGGAGTTATTAGCAATGGAAGTGCCAGAAA CAAAATCCATAACTTCTCACCTTCAACTCCACCACCAACAGTGGTGAATTACAGAACAGCCAAGAGGAGAAAAGGTGTTC CACATAGAGCTCCAATGGGGGGTGGGGAAATTATAGAATACTAAAATCATATAGTGGTTTTGGTCACTCGCCAATCAGAA TCAACATTTCCACCTTAAAAGACATTGCCACTTCCTAAAGTGGCTTCTTAAAAATATTATGCTTTTTTATATTTCATAGT TGTTATGCCTGAGCCTTGTTCACTGAGGCCGGTGTTGGGAACTACCGTTCTATCTTGTACAGAAGAAAAGGGGAGAAGAG GGTATTAGAATGTTAAAAAGCAAATAATTATTATAACAATGTAACATTTAGTGGGGTGGGGGAGTACTTTTTATGTTGGT ATAAGAATGGCATTCATGTGTGGGTATATGATGCTAAATGTACATAGTGGTTTGTAGAAAAGAATTTGTATAGCATCAAA TTTGACAATAAGAGAAAGTTATAGTATTAATTTTATTCCCTTGGTTTGGTACATGACCATTGTCCTTGTCCTCTTAAAGT AGAAAAAGTGTGTGTCATGATCAGCTGGTGGAGGAGTGATTTAAACTTGATTTAATTGGCCTATGATTCTTTGCTCTTGG AACTTAAACTTATCTGAACAAAACGGTGTATGCTTGGAGATCATTCTACAATTGATTCTGAAGTCAGAATTAATTTTGGA CAAAAGTTTCTTTGTGTTGCTTTTAGAATTAAGTATTGATTTTGAGGAAACAAAAACTGATACTGCTGCAACCATGCTAA TAATGTAATGGTATTGGTAGCTGATTTGCGTGGTACTTAAGGGAATGCGCACAAATTGCACTGGTG
CDS sequence (LotjaGi3g1v0540900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGGAATCAATGAGGAAGGAGGAGGTGTTGTTGCTGTGGGAGAAAGGGAGGAGGAGAACAAGTGGCCACCATG GCTGAAACCTCTTTTGAAGACTAACTTCTTTGTTCAATGCAAAGTCCATTCAGATTCCCACAAGACTGAATGCAACATGT TTTGTTTGGATTGTGTGAATGGGGCTCTTTGCTCTGCTTGTCTGGCTTCCCACAAGGAACACAGAACAATTCAGATAAGG AGGTCTTCATACCATGATGTGATAAGGGTGTCTGAGATACAGAAATTTCTGGACATAGCTGGGGTCCAAACTTACATTAT AAACAGTGCCAAGATTGTGTTTTTGAATGAAAGGCCTCAACCTAGGCCAGGAAAAGGGGTCACCAATACCTGCCATGTCT GTGAGCGCAGCCTACTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAGAAGTTCAGGAAG AATAAAATGTTAGGTGAGACAGATGGGTCTGATGTTGAAGAATCAATGAGTGGAGTTATTAGCAATGGAAGTGCCAGAAA CAAAATCCATAACTTCTCACCTTCAACTCCACCACCAACAGTGGTGAATTACAGAACAGCCAAGAGGAGAAAAGGTGTTC CACATAGAGCTCCAATGGGGGGTGGGGAAATTATAGAATACTAA
Protein sequence (LotjaGi3g1v0540900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGGINEEGGGVVAVGEREEENKWPPWLKPLLKTNFFVQCKVHSDSHKTECNMFCLDCVNGALCSACLASHKEHRTIQIR RSSYHDVIRVSEIQKFLDIAGVQTYIINSAKIVFLNERPQPRPGKGVTNTCHVCERSLLDSFSFCSLGCKIVGTSKKFRK NKMLGETDGSDVEESMSGVISNGSARNKIHNFSPSTPPPTVVNYRTAKRRKGVPHRAPMGGGEIIEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 222 | 212 | 4.2E-130 | – | |
| PANTHER | 11 | 222 | 212 | 4.2E-130 | – | |
| Pfam | 80 | 151 | 72 | 1.2E-27 | ||
| MobiDBLite | 208 | 227 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0540900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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