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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0541800 |
Transcript ID | LotjaGi3g1v0541800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | S-norcoclaurine synthase 1; TAIR: AT2G26040.1 PYR1-like 2; Swiss-Prot: sp|Q4QTJ1|NCS2_PAPSO S-norcoclaurine synthase 2; TrEMBL-Plants: tr|I3SPM5|I3SPM5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0541800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95858738..95860655) extracted from Lotus japonicus Gifu genome v1.2.
CATTGATTTATGGAAAAATAATTTGTTGGAAGAAACATAAACTCATTTTAGTGATCTCTACGCTTCAAAAGAGATTAGTC TTTATCTCTCGACGAGTGACACCTGAGCAAAAGGTGAAATATATTTATTTGTTTATTTATTTATCTCTGATATTTTGTTG TTGTTGTTGTTGTTGCCATTGGATTAGGCATCTTACGGAGTCAACAACGTACAGATTCTAATCCAGGAGAACTTGTCTTC ACATGCAGTTGTCATCCTTTATCTTTGTGTGTTGTTTCATACTTCAGATATACACTATACTCACCAGAAACACACTCCAT TGTCAAGAGCAACCTTCTGTAAGAGATCATGTTTGGCAAACTGGAGCATGAGCTGGAGATGCATGTGCCTGCAAGTGAGG TATGGGATCTGTTTGGCACCCTTCGTATAGGCCAATTTGTTGAGCAAGAGATGACTGAGTTGTTCCAAAAGGTGGAGCTA ATTGAAGGAGATGGAGGGGTTGGAACTGTCCTCAAGCTAACCTTTGCTCCAGGTCATTTATATCTCTTATTAATTCATAT ATTGTATGATATTAGTGCATGTTTTGAAAATCTTTCTGTAAATGATTATGAAACCAAAATCAATTTTGGGGTGAGGAAAC ACTTCTCTGACTAATTTCTGGGTGCTAGGATTAATTATTATAAGGAAGAATAAGCTAGTTCAAGCATGCTATTAGCTTAG CCTCACAACTATGCAAAAGAACTAATTTTCCGATGATACCCTCTAGAAAAACAAACAAGATTCACTAATCTCAGAGTATA AACATTGTTTAAAAAAAGGTATAAACATGAATGCATAGTACTCACACTGCTAGTGTCTTTTATATAATATTGATGATCTC CAATGAAAAGAAAACTATTAGTTGAGATATGCTGTTGTTATATTTGATTACTAGTTGCAATTGTAAATTTACTAATTAAT CAACATGTCTTTGTTACAAGTGGAAGGAGCTCAAATTTCTGAAGGATATGATATTGATTCAATCTTAAGATTCATGTACC GTGTAAAAATGATACTATCGATTTCCCCCTACAAACTAAATTAAAAACTCAGTTAGTAGTATATAAATCTCAGAATGCTG ATGATTATTTTTAAATGTTCATGTATAATTAGGGGCCTTGCCCATAGTTAAATTATATTGATTGTTGAAGTTTTGGGGGT TAATTTGACTAGGTATACCTGGGCCAACAAGTTACAAAGAGAAGTTCACCAAGATTGATAATGAGAAGAGGATCAAAGAA GTAGAGGTAGTTGAAGGAGGGTACTTGGAGCATGGATTCACTTTATACAGGGTTACCTTTCATGTCATAGAGAAAGGTGA AGATTCAAGCGCGCTCAAGTCCACAATCGAGTATGAAGTCAAGGAAGAGGATGCAGCTAATGCCTCACTTGTTTCCATCG AGCCAGTTGCAAACATTGCACAACTTGCCAAGAATTACTTCAGCAGAAACAAGGCTGCAAAAGAAGCAAAACAGTAATCA TGTTTGTTTCAACTTACTTTTTTCTCAGAATCAATTATGACAACCAAAAGCTACTCAGAAAAGCTTCTCTCCATAATTGA TTTTGACTTTAAAATCAATTGTCGAAGGATTTCCAAACATTCACTAAATAATACTCGAGAATGGCAAACTCGCTCCCTTG ATTTGCCTAAGTTCATGAATAAATGATAAATTTGTCTCATATGCCCAATCATCTACCATGTTTATTTGTTGAGCATAATT TATCAAATTTTGTTTCCAGTGTCCAAAAGCTATAGTCTTCATTAATAAATCACCACAGTACTAATGCACTAGTTGGTCCA AAGGAGGTGATGGAGCCAGAGATGTTTCTGAGGATTTAATTTAAATCCCAAATTGAACTGATTGTCAAAGATGAAGTA
CDS sequence (LotjaGi3g1v0541800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGCAAACTGGAGCATGAGCTGGAGATGCATGTGCCTGCAAGTGAGGTATGGGATCTGTTTGGCACCCTTCGTAT AGGCCAATTTGTTGAGCAAGAGATGACTGAGTTGTTCCAAAAGGTGGAGCTAATTGAAGGAGATGGAGGGGTTGGAACTG TCCTCAAGCTAACCTTTGCTCCAGGTATACCTGGGCCAACAAGTTACAAAGAGAAGTTCACCAAGATTGATAATGAGAAG AGGATCAAAGAAGTAGAGGTAGTTGAAGGAGGGTACTTGGAGCATGGATTCACTTTATACAGGGTTACCTTTCATGTCAT AGAGAAAGGTGAAGATTCAAGCGCGCTCAAGTCCACAATCGAGTATGAAGTCAAGGAAGAGGATGCAGCTAATGCCTCAC TTGTTTCCATCGAGCCAGTTGCAAACATTGCACAACTTGCCAAGAATTACTTCAGCAGAAACAAGGCTGCAAAAGAAGCA AAACAGTAA
Protein sequence (LotjaGi3g1v0541800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGKLEHELEMHVPASEVWDLFGTLRIGQFVEQEMTELFQKVELIEGDGGVGTVLKLTFAPGIPGPTSYKEKFTKIDNEK RIKEVEVVEGGYLEHGFTLYRVTFHVIEKGEDSSALKSTIEYEVKEEDAANASLVSIEPVANIAQLAKNYFSRNKAAKEA KQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 1 | 151 | 151 | 2.87E-27 | – | |
PANTHER | 1 | 156 | 156 | 3.0E-64 | – | |
PANTHER | 1 | 156 | 156 | 3.0E-64 | – | |
Gene3D | 1 | 157 | 157 | 1.4E-43 | ||
CDD | 3 | 128 | 126 | 1.36594E-36 | – | |
Pfam | 3 | 131 | 129 | 7.8E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Defense response | Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. |
Expression pattern of LotjaGi3g1v0541800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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