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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0547400 |
Transcript ID | LotjaGi3g1v0547400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | MADS-box transcription factor AGAMOUS-like protein; TAIR: AT5G13790.2 AGAMOUS-like 15; Swiss-Prot: sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15; TrEMBL-Plants: tr|A0A072TKE2|A0A072TKE2_MEDTR MADS-box transcription factor; Found in the gene: LotjaGi3g1v0547400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96408360..96414622) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGATATACAACAGAGCCATGCAAAGTTGCCGTTTCCAGCACTCGCCATTTGGGGTAAAACGCTCCCTCCCTCCCTCA TCTTCTCCGCTAAATTTCTCAGCACCGCTTTTTCTCTTTCTCATACCCCAAAAGCTTTGCACCTGTTTCAGGGAAAATCT CAACTGGGTTTTTCAGTTTTTGTGGTTTTGATCATTTGGGTTTCTGGGTTTTGAGAAGCTGGTTGCAGAGAGAAAGGAAA ATGGGTCGGGGTAAGATTGAAATCAAGAAAATAGAGAATGCTAATAGCAGGCAAGTCACATTCTCCAAGAGGAGAACTGG GTTGCTCAAGAAGGCAAAGGAGCTAGCCATTCTCTGTGATGCTGAGGTTGCTGTTATCATCTTCTCCAACACAGGCAAAA TGTTTGAGTTTTCCAGTTCTGGGTATGTGTGTTTCATATGATATCATATGCTTGCATGTCAGTTTTTAATTAACTATTTT CCAATTTGCTTGTGTGTGTTTTTTGCATGTAAGAAGAATAAATCTTTATCTTATTCCATGGAATCTGGATGCTTTAAAAT GTTATTTGATTTTTCCAAGGATTTCCTTATGTTCTGTTTTTATGTTTGTGTGTTTTGAATTTTTTTCCTTTTTTTTCTTT TTCTGAAATGAGACTATCTATTTTACCTTCCATTTTGAGTTACAAGCTGTTGATGTTTCCTATGCTATCTTTTTATCTTT ATTTATTTATAATTCCAGATGAACTTTCTTAGATTTTTGGTGATTGTATCCCTTGCTAAGGTTAGTCCTTGTAAGTCAGG GTGGTTTCCATATTTTGTTCACAGTTTCCTTGAGCATGAATTTGCAAAGTTACTTTTTGAACTATGAAGTCTGTGATTAA GATGAATAAATTTTGTTTTTCCAAATTCCAATCAGTTTGTTTGATTTTGTTTTAAAATTCCCTTTTTTACTATGTGCTTC AAAGCATCTAAGTGAGTTAAAAACAGCATGGGATGGCATATGTTGTGTGTGCCCCTTTTGCTTATAAGAACTCTAACTTT TTATACTTGCTTTGCATCCTTCTTGCAGTATGAAGCACACACTTTCAAGATACAACAAATGTAAGGATTCTTCAGAGGCA GAAGTAGTGGAACCTAAAACGGAGGAACTCTGTTTAACAGAGGTACTCTGTTTTACTCCTTAAGGTTTCAGTTTAGGTCT ATTAGATTGTTAGTTTCTTAGTTGCAGAACCCTCACCCCATTTGAAAATCCAGAAAGAAATAGCTTTTTCTTATTGACTG ATTAAACAATGTTGGTCGATTGACGCTAGTAATTACAAATTGCCTGCATAACTGTTGTTGTAACATTTTCCTTCTCCATT AGGTACTTGTTATTTCTTCTTGGATTCATTGTTGGAATTGTCATGTCCGATAACATCTTCTTTTTCTCTACAGAAGGAAG ATTCTAAGATGGTGGATATTCTTCAAGATGAAATTGCAAAGCTAGAAACGAAGCAATTGTATGCATTCTTTCACTGTTAC ACATCGGCTAAAATTATTCCATTGTCATTTGCACTGCTTCTTATGCTTTTCATAATAAGCATTATCTCTTAGAATGATTT CCATTTGTGACTATAGACGGCTTCTGGGTAAGGACTTAACTGGATTGGGCTTAAAGGAACTGCAAAATCTAGAGCAGCAA CTTAATGAAGGTTTATCGTCTGTAAAGGAGAGGAAGGTACTTCACATCTTATCTTATCCTTTTCCCTCCTCATGTCCATT AGAATAATGTTGTTCAGTGGTTTCTGTTCATAACAATGTACTTCACGGCTTCACCTCTAAGCTTAGCATTTCTTGTTTCA GGAGGAATTGCTTATGGAGCAACTGGAGCAGTCAAGAGTTCAGGTATATCGCGATCATGAATTATTATTCAAAATTTTAT GAACTTAGAATCCCTGCCTTACAAGCTAACGTTAAGACAAATAATTGTTGAGATTTCGAGTGGAGTTTGTCTTATTTAAA GTCTGACTCTTATATCACCCACATGGTTTTAAATTGCGATTACGTTACAACCATTGCATTTGTCTCTATCTTAGGATTGC ACACATAGTCATTCATGACTTTCACCCAAAAGTCCCACTGCAGTCACACTGCACATTTACACTTGTTATGTTGCGACGTT ACATAGTTTTCCTATGTTTTTGAAACACACCACAATTTCAGTGCAGTGCAGTTGTGTACAAGGCTGCAAAAACAATCTTG CAATCTTCCTATTATTAAAACTAAATTACCTGATTGTAATGAATTGTGACTTGAAATGAATAGATGAAATTGAAATCAGT GTTGATTCAATACTTGCATACACTTCTCTTTAGATTGGTATTGAACAGTGCTATCCAATATCGGCTATAGCGGCGCTACG CTACTATTGCGTAGCGGAATTTTGGCTTATTGCGACGCCGCTATTGCCCACTATAGTGCGCTATTCCCACTATTCGCCGC TAAATAGCGGCCGAAATAGCAGATTTTTGGCTCACCACGATGGTCCGTGATCGCGATTTGACAACACTGACTATTGAATT GTGGTTGCAACATTAAGATGATCAGTAGGCTATTTACTGTGATATAATTGCGACCGACCGCACTGCAATTTAATTTCCTA AATAGGGAACAAGGACAATACTGTTGCTATAATTTTTTGATTTCCTCGTTACAGGAGCAGAGAGCCATGCTGGAGAATGA AACTTTACGGAGACAGGCAAATTATATTCTTCTTATGTTACTGATTTTCCATCATCTCTATCTTTGGGTGATACTAATAT ATATGACTCTTAACTTTGTATTCTTGCCTAATATGTATTGCAGGTTGAGGAGCTTCGTTGTTTGTTTCCATTAACAGAGC ATATAGTCCCAACTTATCTTCAGTATCACCATATGGAAAGAAAGAATGCCTTTGTAGATAATGGTGTTAAAAGTTCTAGC TTATTCAGTATCTGTGCAAATGAGAAAGGAGATTCAGACACCACATTGCATTTAGGGTACTGTGTTTTTCTATTGGCAAC AACTAAATTTGGGTTAAGGATGGTTTCTAGCCAAACTTAATTAACACTGTTCAAATACTGCTATGGCCTATGATGTTCCA ACAGACACATCTTGAAATTATTCAGTTTTTTTGTATTAGTTCTTCCATTCTTGAAAGACTTCTCCTTCACTTTTTTTTTT CTGATTAATGAGTGTTTGGAAAACCATTTGTTTTGCAGTTTCCCTTACAAAACTCAACTGAAAAAAGCATTTTTCATGAA AAAACATGAAAGGAGGTGTTTTGTTCTGCTGGCATTAAACGCAATGGAACTTTAACATTAACCTAGGAATCCTCTAATAG TGTCTGTTTGTTTGTTTTTATGTTGCAAACTCCCTTTGATGCCTAGGAATGCTCAATTGTACATTCCAATGTGCGAATGA GCAATGTGCAGAATGTTGAAGGAAGCAAGAGGCTCCGTTGACATCCACTTCAGTTGAATTGAAACTCAAACACTACCTAA TTTATTAACTACATGTGAAAGATTTGAATTATTATGCTGCATTGCAAGACTTGAAAGGTCTTTCTCCTTTTTTATGTGCA CTCCCCCAATTGTAGAGTCTCATAGATTGCTCCTTGTTTTGCAGGTTGCCGACTGATGTTCATCGCAAGAGGAAGGCACC TGAGAAAGAAACCTTTTCTAATGATTCATAGATTCATATGGCTCTAATTACTCTGATCCAGCTCTGACTTTCTTGTTTCA ACAAGGTAAAGTGGAACTTGAGACTAATATAGTGCAGGTAGTTGTGCACAGTGTCAGTTAAATCACAGAGGAAAAGTAGG ACCCTAGGTGACCCCCCAAACTATAAATGTAGAATTTGACTCTTTTAGAATATTGACAAGCTGCAGATTATTACCAGCTT TACCAAATTTTGGTGTCATTGGCTGGAAATGTCTTACATTATGAACTTTGTTTTAGGTTATCATGAAAAATATGCTTAAG CTTGTTTAATTGCTGTACAAGTTATCTTGCCTTCAATTTTTTTCATTTTACCTTATCATTTACAGTGAGGAACCTGGTTG CATTCTCCTAAACTGAGGTGATCAATGGTTGAGTGATAACATCAAATTCTAGGTTTCTGTTGTAGTTGCCTTTTCTTTCA TGCGTCAAAGTTCTCTCCCAATTTTCTGTTCTGCTACTCTTTCTCCTTCCTGGCTTCTTGATTTGAGTCCACCTATAAAG TATCAAACCAAAAAGGATTCCTACCAAATGCTAGTGCTAATGCCAACGCAAGTAATTTAGTTATGTTTTATGGGGCAGCG ATTAGTTACTCAAATTGTTGAATATCTTGACATTTTTGCGAGAGAGAAATGAGGAAGTGGAGGGGGATCATTTTTCTTAA ACTTTTTTCTCTAATATAAATTGCTTTCCTTTTCAAAGAAAGAGTATATGGTCTCAAAAACATATTTAGTTCTAGGCCTC TAGGGTGAAGTGCTCTAGAATCACTTATGGTTAGAAGTTACCGGTCTTAGCTTTTCTGTAAATGTTCCTTGAGTTATCAG ACACACACTAAATGAAAAACAAAAACTGCTTGAAGGAGTTGCATCACTTTTTCAATTATGCGCAAGGTTATCAAGTCAAT ATTTATGTAGTAGTTTATTGAAGTAATCATCTGAATCATGTACTTGACTATTCTTTATAGACACTGTTCAACTACAAACA CCATTGTTCAAAGAAATCACAAGTATTTGATATTTACATGACTTCACAATAATCATACCGATTAAAACAACAAATTATCT AAACCTATTCATCTATACAATGGAACTTTAGTTTTGTTTCCTCACTTGAAAACAATCAATTAATTCAGTTCTCTGGGCCA TTACCTTGGAAAATACATCATCCACCTTCGCTTTTACAACATCACATAGCTTCTCGAACACGTGCAGCTTTGTCTGCAAT TCCTTGGTTGCTTCATGCTTCACTTCATCTGAAGCAACAAGAAGTTCAGCAAGAGCATCATTTACCTCTTTCACCTCCTT CAAGATTGGATTTTGCTTCACTTCCCCTTCACTTATTTTGGAATCAAGTGTGAGAATTGAAGAACCATCAAACTCACCTG CCATTTTCTTCAGCTCCATGTATGGCTTAGCATCAGTACACAAACCAGACAACAATACCCCACATACCCAGAACCCAATA CTCTTTATTTCCTTCACAGCTTCATGAACAACCCATTCCTTACCAGAAAAAAACCTTGCTTTATCACTTTCTGTGTAAAA TTCTTCACCAAACTTGGTGCTGAAACAACCTGGCTGAATTGCTTTCAGATGATGCCCTGTGGCTGAAGATGGTGAATTCT TCTCCAATAAGGCCAAGCCATGAGAAAGCGAGAGGCGAGCCTGTTCGAGCCGAGAAAATGAAGAAGAAATGGAATTGAAA AGATCCAGTAAACACAAGCTGTAGCTGAGATACCCTTCAATAGAATCAACCTCCCATACACTCATTGGGTAATCTATATC CACAGCAAGGTTTGCAAGAGCCTTGATGGTGATGGATAAGAGCTCAAGGCATTTTTCAATCCATGACAAGGACAAGATCT CTGATCCGGGTTTCAAATCCAATGCTAATTGATCAATGAATTTGGAAACTTCAGATCGGAAAGCCTGCAAGGAAGCTTGT AATTCCTCAGATTGAGGAGGATCATGGTGATGGTGATGATTCTCCAGTTTTGCAAATTTGTGTAACAAGAATACCATGGA CAATTGCAACACAAAGAGAAGCTCTATTACTTTTTGAGGGTGTGAGTTGACAACTACAATTCAAAGAGCAAGGTTTGAAT GTTTGGTGTTATATGTTGATGACTTCAAGTTTCTATGATTTGTGGGAGTTTTTGAGTGTGTGACTTGATCTTAATAGTTG CAGGATAGAGGTGAAGAGCATCAACTTGTTGATGTAACTCCGGTGCAAATTGGCCATTGAAAAGTGAAAGCTCATAAACA GTGGGCATTTGGCGGCGGTCAAATGTGATTACCATCTGAATTGTGATACTTTTTTTTTTAACATAATTGTTGTTGTTATC TTAGTGGTTGTTGAGTAGTGTATGACAATGAGAGTTATAAGTTAACATCTTGAACTTCTCTTTCATTTTAATCTTCAATA TTTTAGATTGGTCCGGTGTCAACTGTGAATGAAATGGATTGATTTAAAAATCTGTGTTTATCTCTCTAATCCATAAATAA TATTCAATTATTCATAGTTTTTC
CDS sequence (LotjaGi3g1v0547400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGGGGTAAGATTGAAATCAAGAAAATAGAGAATGCTAATAGCAGGCAAGTCACATTCTCCAAGAGGAGAACTGG GTTGCTCAAGAAGGCAAAGGAGCTAGCCATTCTCTGTGATGCTGAGGTTGCTGTTATCATCTTCTCCAACACAGGCAAAA TGTTTGAGTTTTCCAGTTCTGGTATGAAGCACACACTTTCAAGATACAACAAATGTAAGGATTCTTCAGAGGCAGAAGTA GTGGAACCTAAAACGGAGGAACTCTGTTTAACAGAGAAGGAAGATTCTAAGATGGTGGATATTCTTCAAGATGAAATTGC AAAGCTAGAAACGAAGCAATTACGGCTTCTGGGTAAGGACTTAACTGGATTGGGCTTAAAGGAACTGCAAAATCTAGAGC AGCAACTTAATGAAGGTTTATCGTCTGTAAAGGAGAGGAAGGAGGAATTGCTTATGGAGCAACTGGAGCAGTCAAGAGTT CAGGAGCAGAGAGCCATGCTGGAGAATGAAACTTTACGGAGACAGGTTGAGGAGCTTCGTTGTTTGTTTCCATTAACAGA GCATATAGTCCCAACTTATCTTCAGTATCACCATATGGAAAGAAAGAATGCCTTTGTAGATAATGGTGTTAAAAGTTCTA GCTTATTCAGTATCTGTGCAAATGAGAAAGGAGATTCAGACACCACATTGCATTTAGGGTTGCCGACTGATGTTCATCGC AAGAGGAAGGCACCTGAGAAAGAAACCTTTTCTAATGATTCATAG
Protein sequence (LotjaGi3g1v0547400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGKIEIKKIENANSRQVTFSKRRTGLLKKAKELAILCDAEVAVIIFSNTGKMFEFSSSGMKHTLSRYNKCKDSSEAEV VEPKTEELCLTEKEDSKMVDILQDEIAKLETKQLRLLGKDLTGLGLKELQNLEQQLNEGLSSVKERKEELLMEQLEQSRV QEQRAMLENETLRRQVEELRCLFPLTEHIVPTYLQYHHMERKNAFVDNGVKSSSLFSICANEKGDSDTTLHLGLPTDVHR KRKAPEKETFSNDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 1 | 60 | 60 | 7.8E-41 | ||
ProSiteProfiles | 1 | 61 | 61 | 32.071 | ||
PANTHER | 2 | 207 | 206 | 1.2E-104 | – | |
SUPERFAMILY | 2 | 75 | 74 | 4.58E-32 | ||
PANTHER | 2 | 207 | 206 | 1.2E-104 | – | |
CDD | 2 | 77 | 76 | 3.15701E-43 | ||
PRINTS | 3 | 23 | 21 | 1.6E-28 | ||
ProSitePatterns | 3 | 57 | 55 | - | ||
Pfam | 10 | 57 | 48 | 1.1E-25 | ||
Gene3D | 13 | 94 | 82 | 3.8E-28 | ||
PRINTS | 23 | 38 | 16 | 1.6E-28 | ||
PRINTS | 38 | 59 | 22 | 1.6E-28 | ||
ProSiteProfiles | 92 | 182 | 91 | 13.221 | ||
Pfam | 97 | 176 | 80 | 4.6E-16 | ||
Coils | 126 | 149 | 24 | - | – | |
Coils | 155 | 182 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0547400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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