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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0550900 |
| Transcript ID | LotjaGi3g1v0550900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 40S ribosomal protein S27; TAIR: AT5G47940.1 40S ribosomal protein S27; Swiss-Prot: sp|A1SGG5|SYM_NOCSJ Methionine--tRNA ligase; TrEMBL-Plants: tr|A0A0B2PVX5|A0A0B2PVX5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0550900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96768428..96772075) extracted from Lotus japonicus Gifu genome v1.2.
GCTTGATTTTTCCGTCAAGATTCAAGAAGAGTATAAATAAACCCCTACCTTTATTCTCCTTCTCCTTTTGTTCTTCAGAA ACCTGTATTGATGAGGATGACGACGACGACGATGGAAACAAATTGGAGTTCCGAAAGCAACTGGACCATCGCCTCCGGCA CAATCCCTAACTGCCTCACCATCCAATCCTCTCTCTCTTTCACCGACGACGAACAACCCACCATCGAATCCACTCCTCTT CTCCTCCTCCCTCCCTCACCAGATTCCCCTCCTTGCGAGATCAAGAGTCAGTAATCTCAATTTCATTCTTCTCTGTTCCA TGATCTGACTGAGACATTCTCATTCATTCTCTGTTGTGTTGTGTTTTGCAGTTAATTTTGCAGGGAAACACGAGCTGAGA CAAGTCTACATTCGAAGCACCGCGCGAGTCTACGAGATTTACTGTGCACCCGACCTCAAGACCACCGGCGAGTATCTATG CACGGTTCGATGTGGTGTCGCTGTTCGAGACGGTGACGTTCTTCGTTGTAATTTGATCGAGTCTTTACCTAATCGAGATT CGAGTGTTAAATGTGAAGATGATTGGGTTGAAGTCAAAGTTGCTGATACTTCCGATCATGCCACTCAGGTATGGTTTGTA GTTGCAGATTCCACTTTGTTATTCATTCCAAATAAATTTGAAGATGATGGTATTATTGCCAATGTTGGGTATTTTTTAAG TCCTGAAACTATTAGACACTAACCATAGAAGCTAATGTGAATTACTGAATTGTGTTTTAGTTTTCGGTTTGCATTAATAT AAACATGATTTTACAGATTTCAAGGATTAAATAGATAACTAGGATTTTGTGGCATTGAGTTTAGCTTGGATTGATGTTGA GTTTTATGGAAATCCAAACTCAGGTTAAATGGTTTTTTCTTAACCAAGTTGGTGGTAATTGTTAGCTACTACCTACTAGT AATTTATTGGTTATATCTTTGTTTTCTGATTTTAAGGTTCTCTTTTTATGTCATTAGGATCTTTATGAGGCTACGGCAGA GATTGATGATGTGGATCCTTGTGTTTCTGTTACAATCCGTTTGCTCTCGCTTCAGAGTAAAGGTTGCGTTAATGTCCATG AGATTTATGTGTTTGCTGATCCTGTTGATTCAGAAACCCAGGAAACCCGGAATGAAAACTCGTCTAGCAGTTCTCTCATG GCTATGTTTCTTCCTACCTTGATGCAGTTATCCAAGGCAAAAACGGGCCTTGGAGATCTAAATGCTGTTAGAAAGGAGAA GCAACATGTTTCAGAGGATGGATTGGAGGAAAACCCCTGCCCTAGTGATTCTGTAATTAAAACTCAACTTAAAGGTAAAG CTAGCATGAGTGATCCTCAAGAAGTGAAATTGAAAGAGGTGATAGAAGGTTCATCCCAGCCAGACATACACACACAAGTT GCTAACATGGAGAGTGGCCATGCTGCTGTTCCCTTACACGCTGCTAAAGTGGATAGCAGTTGCAGTGCTGTGCACTCAAA AATTGCAGAAGTGGTGAACAATCACAGTGCTAGTACTGTCCCATCACAAGTTGCAGTTACTGAGAGCAATCAAGGTGGGT TTTCAGGTGGCGGCGTTGAAAGAGTCCTGGAACAACTTGTATCTCGAATGGACAGGCTAGAACAAATCTGTTTGGGCTTT CAAGAGAAAATGGTAATGCCCATGAACAGCATTGAGACAAGACTCCAGCGAGTTGAGCAGCAACTTGATACACTGACTCA GAAATTGCAGAGTTCTGCATCACCATCATGTTATAGAATTTCTGCTCCTGATGCTTCTTCTACTGAATCAGATGACATCT CTTGTGACATTGGTCTTGATGATCCTGCAATTAGAGAAATTGAATCAGATAATAATTATTTACACACAGAGGTATCGTAT GTCTCTCCTCATGATATGTCTGATTTGGAATATGCTCCTCAAATATTCCCAGGTCTTGTAGTTACAGCTCCTGAGTTTTC TGATGATGAGGATGAGGTTGATAATGCATCGGGACCAGAAATGAATTCTCCAAATGATAGAGGAAAGCAGTCCATTGATG ATGCTTTATCTTCTGCTTTAGCTAATTTTTTATCTTCTTCTCTATCTTTAGAGTCTCCAAAGAATACTGATACTCTACCG TATGAAGCCCCTGAGGTTTTAAATGAAGACGATGATAATCATGAGAGTGACGAGGTGATTGCGAAAAATGACAAATATGG AAAAAGTGATGTATTGTCATCCGATGTGAATTACATTTCAAATGAGTTGCTTGACAATCAAACCCCAAGTGGTCTTAATA TCACTCATGAAGGATCCGCTGCATGGACTGAACTTACTAGTGCAAGTGCAACAGAGGTCCCAGAAAAAACCTTCCATGAG AACATTATAGAGAATGTTCTGGAATTTTCACTTGCTTCAAATGTAGTAGATTTTGAAATCCCGCTATTGGATGTGAAATT CATTTCTCAGAGAAGTCCTGTTACTGAGGGTTTCCTTGAAGCCCTTCTGGTTGAGACACCAGAGACCAGCTCAAGAGACC CATCACTCAAGGAAAGCAATGACGATCTTCAACTGAAAGGCAATGGTAGTCACTCAGTTGAGGAGCAATGTAACTTGATC TCAGTTAACAATGGGGAACTGGAGAATCCAGCTAGCGACGATCATTTTGCTCTGGACGAAGCCTTCTGTACTTCCATAGC TTCTTCACCTGTGAACATGGGGGTTGTTGATAATCTGCAGGGAGACCATAAACGCAAGCGTGATGTTGGTGAAATATCTC CATCAAGTCTCATATGAAGTCTTTTCTAGTCATATACCTCTTGTTTCGGTTCATGAATCTTGATCATTTAGCCATTTGTA AATATAGCTGTTTTCATGAATATGATTCATCTGCTTGCTTATCTAGATTTTGTACCACCAAAAGATAATTATTTGTTTAG AGAGTCATAGAAGTTGCTTCGTAAAAACATGTTGCAGCTGTTCCTTGTTTATGGCGTGGTTACATGACAATTGTAATTAC TGTCACTCCCTGATTGTCCTTGCAGGTGAATTATTCAGAGGTGAATTATTTTTCTTCATACATTATAGTTAAATAATGAG AGTTTTTGTGCCACTGGATATTGTTGGCGTATAAGGCCGTTGCAATTATCGAAATTCTTGATATTTTTCTATTCTTTTAT TAGAATATAGAGCTACTGTTTGATATTTAGATGTTAGTGTGTGTTTGAATTTCCGCTGAACTCAAATGATTCATGTTAAA GTCAATGTCACATAATTTTAGTGCTCTGTTTGTTCGTGGATATGTATACGTTTATGTTGTCAATATGGAAGACAATCAAA GAAGGGTTCAACTTTTAAACTTTGCGCAAGTTGCATGTCCTTTTGGTATGGTCACTGGCTAAACAATGAACAACTTGGTG AACTTAGTGAAGATAGGCGCTACCACAAATTTTGAATTTCTTTCCTATGACACCAAAAAAGGGATTACATTACATTGAAT TTATGTTGTGTTTGATAAAACTATAAAAAAAAAAAAAAATTAAAAGTTAAGATCAGAATTGCAGTAAGAACAATCATTTT TGTGACCTAGCAGCTGATCCGATTGTCTTAGTATGTCAAAAAAGAAAT
CDS sequence (LotjaGi3g1v0550900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGATGACGACGACGACGATGGAAACAAATTGGAGTTCCGAAAGCAACTGGACCATCGCCTCCGGCACAATCCCTAA CTGCCTCACCATCCAATCCTCTCTCTCTTTCACCGACGACGAACAACCCACCATCGAATCCACTCCTCTTCTCCTCCTCC CTCCCTCACCAGATTCCCCTCCTTGCGAGATCAAGATTAATTTTGCAGGGAAACACGAGCTGAGACAAGTCTACATTCGA AGCACCGCGCGAGTCTACGAGATTTACTGTGCACCCGACCTCAAGACCACCGGCGAGTATCTATGCACGGTTCGATGTGG TGTCGCTGTTCGAGACGGTGACGTTCTTCGTTGTAATTTGATCGAGTCTTTACCTAATCGAGATTCGAGTGTTAAATGTG AAGATGATTGGGTTGAAGTCAAAGTTGCTGATACTTCCGATCATGCCACTCAGGATCTTTATGAGGCTACGGCAGAGATT GATGATGTGGATCCTTGTGTTTCTGTTACAATCCGTTTGCTCTCGCTTCAGAGTAAAGGTTGCGTTAATGTCCATGAGAT TTATGTGTTTGCTGATCCTGTTGATTCAGAAACCCAGGAAACCCGGAATGAAAACTCGTCTAGCAGTTCTCTCATGGCTA TGTTTCTTCCTACCTTGATGCAGTTATCCAAGGCAAAAACGGGCCTTGGAGATCTAAATGCTGTTAGAAAGGAGAAGCAA CATGTTTCAGAGGATGGATTGGAGGAAAACCCCTGCCCTAGTGATTCTGTAATTAAAACTCAACTTAAAGGTAAAGCTAG CATGAGTGATCCTCAAGAAGTGAAATTGAAAGAGGTGATAGAAGGTTCATCCCAGCCAGACATACACACACAAGTTGCTA ACATGGAGAGTGGCCATGCTGCTGTTCCCTTACACGCTGCTAAAGTGGATAGCAGTTGCAGTGCTGTGCACTCAAAAATT GCAGAAGTGGTGAACAATCACAGTGCTAGTACTGTCCCATCACAAGTTGCAGTTACTGAGAGCAATCAAGGTGGGTTTTC AGGTGGCGGCGTTGAAAGAGTCCTGGAACAACTTGTATCTCGAATGGACAGGCTAGAACAAATCTGTTTGGGCTTTCAAG AGAAAATGGTAATGCCCATGAACAGCATTGAGACAAGACTCCAGCGAGTTGAGCAGCAACTTGATACACTGACTCAGAAA TTGCAGAGTTCTGCATCACCATCATGTTATAGAATTTCTGCTCCTGATGCTTCTTCTACTGAATCAGATGACATCTCTTG TGACATTGGTCTTGATGATCCTGCAATTAGAGAAATTGAATCAGATAATAATTATTTACACACAGAGGTATCGTATGTCT CTCCTCATGATATGTCTGATTTGGAATATGCTCCTCAAATATTCCCAGGTCTTGTAGTTACAGCTCCTGAGTTTTCTGAT GATGAGGATGAGGTTGATAATGCATCGGGACCAGAAATGAATTCTCCAAATGATAGAGGAAAGCAGTCCATTGATGATGC TTTATCTTCTGCTTTAGCTAATTTTTTATCTTCTTCTCTATCTTTAGAGTCTCCAAAGAATACTGATACTCTACCGTATG AAGCCCCTGAGGTTTTAAATGAAGACGATGATAATCATGAGAGTGACGAGGTGATTGCGAAAAATGACAAATATGGAAAA AGTGATGTATTGTCATCCGATGTGAATTACATTTCAAATGAGTTGCTTGACAATCAAACCCCAAGTGGTCTTAATATCAC TCATGAAGGATCCGCTGCATGGACTGAACTTACTAGTGCAAGTGCAACAGAGGTCCCAGAAAAAACCTTCCATGAGAACA TTATAGAGAATGTTCTGGAATTTTCACTTGCTTCAAATGTAGTAGATTTTGAAATCCCGCTATTGGATGTGAAATTCATT TCTCAGAGAAGTCCTGTTACTGAGGGTTTCCTTGAAGCCCTTCTGGTTGAGACACCAGAGACCAGCTCAAGAGACCCATC ACTCAAGGAAAGCAATGACGATCTTCAACTGAAAGGCAATGGTAGTCACTCAGTTGAGGAGCAATGTAACTTGATCTCAG TTAACAATGGGGAACTGGAGAATCCAGCTAGCGACGATCATTTTGCTCTGGACGAAGCCTTCTGTACTTCCATAGCTTCT TCACCTGTGAACATGGGGGTTGTTGATAATCTGCAGGGAGACCATAAACGCAAGCGTGATGTTGGTGAAATATCTCCATC AAGTCTCATATGA
Protein sequence (LotjaGi3g1v0550900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRMTTTTMETNWSSESNWTIASGTIPNCLTIQSSLSFTDDEQPTIESTPLLLLPPSPDSPPCEIKINFAGKHELRQVYIR STARVYEIYCAPDLKTTGEYLCTVRCGVAVRDGDVLRCNLIESLPNRDSSVKCEDDWVEVKVADTSDHATQDLYEATAEI DDVDPCVSVTIRLLSLQSKGCVNVHEIYVFADPVDSETQETRNENSSSSSLMAMFLPTLMQLSKAKTGLGDLNAVRKEKQ HVSEDGLEENPCPSDSVIKTQLKGKASMSDPQEVKLKEVIEGSSQPDIHTQVANMESGHAAVPLHAAKVDSSCSAVHSKI AEVVNNHSASTVPSQVAVTESNQGGFSGGGVERVLEQLVSRMDRLEQICLGFQEKMVMPMNSIETRLQRVEQQLDTLTQK LQSSASPSCYRISAPDASSTESDDISCDIGLDDPAIREIESDNNYLHTEVSYVSPHDMSDLEYAPQIFPGLVVTAPEFSD DEDEVDNASGPEMNSPNDRGKQSIDDALSSALANFLSSSLSLESPKNTDTLPYEAPEVLNEDDDNHESDEVIAKNDKYGK SDVLSSDVNYISNELLDNQTPSGLNITHEGSAAWTELTSASATEVPEKTFHENIIENVLEFSLASNVVDFEIPLLDVKFI SQRSPVTEGFLEALLVETPETSSRDPSLKESNDDLQLKGNGSHSVEEQCNLISVNNGELENPASDDHFALDEAFCTSIAS SPVNMGVVDNLQGDHKRKRDVGEISPSSLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 549 | 548 | 4.3E-198 | – | |
| Coils | 355 | 375 | 21 | - | – | |
| Coils | 380 | 400 | 21 | - | – | |
| MobiDBLite | 479 | 503 | 25 | - | – | |
| PANTHER | 561 | 725 | 165 | 4.3E-198 | – | |
| MobiDBLite | 659 | 682 | 24 | - | – | |
| MobiDBLite | 730 | 750 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0550900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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