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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0553500 |
| Transcript ID | LotjaGi3g1v0553500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AGAMOUS-like MADS box transcription factor; TAIR: AT1G71692.1 AGAMOUS-like 12; Swiss-Prot: sp|Q38841|AGL12_ARATH Agamous-like MADS-box protein AGL12; TrEMBL-Plants: tr|I3S8M3|I3S8M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0553500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97093931..97098568) extracted from Lotus japonicus Gifu genome v1.2.
GACGAATTAGGACCATGACAATTTGCTAGTGGGGTTAATAAGTAAATTAGATTTATGATAGAACTGTTTGTTAGCTTGAG TTAGTTTTAGTTTTTCTCATTAGGGTGACACACTATAAAATTGGAATTCACATTTTTTTAACCTAAGACACATCCTAATT TTCTATTTATCTCTCACTTCGTGTGACGTTACATTACATGCAGTATTTCCCTTCTCTATAGTTTCTTCCTATTTTTCTCC TCATGTTTCATGTACATACACCTCATGATGTCCTTTCCAGCAAGTTTCTCTACGGCCACTCTACACCATCATTTTAACCG TTGATTATAAATTATAATAATCAATGGCTAATATTGATCTCAATAAAAAAAAACTTGTCAAATAAAATAGTTGATTGTGA TTTGTATGTTGCTGAAGCTGGAGAGGCAGCAGAGTATCTAAATCCGCCTACCAATCTTTTTCCATAACATTGTAATCAGT TCAGTGATCAATCATGAACAAAGTTTTACCCTCTCAAATTCAGTTTCTCCCTGTTGGATCAGAATTCTCATGCAAGAACA TTCAGATTTGGATAATTTGTCCTCATATGAAATGATTCCTCGTTGTAGTTGAGTGCGGAGTGCACCATAACCAATCTGAT CATGGAAAGAGATACCAGCCTATCAGGGGAATGCTTATTGGATTGAGCTCAAATCATAGCCGTTTTATGCTTCACATTCT TCAACTTTATTAGATTCCTGGTTTGATTCCAACACTGTTCAGCACAAGTTAACGTGCATTAGGGAAAACCCTGTTGACCA TTAATGTTAATCTAACCTATGAAACATGGAAAAAGCAGTCACTCCTAAGTGCACAACAGAGTAATATACTATATAGCATA TATTATTTTGCCCCTTTGATGCACGATAGAGAAAATGCACATTTTTCCACCAATGATCCTGAGAATAAAGCCTGGCCATA AATATTTTAGTGAAAATGAACCATATTCTAAGGCTGAAATGACCAAATCAACTTTAGTATCACATGCTTTGATGCGACTG ATTATGAAATTCATTGGAACCCAAACACTATGAAGTGATGAATATATGAAAAGAGTAAACAAAACTTAGTGAGGTGTAAA GTTGGCTGCTAATCAATTAGTTAATATTAACCTTACTATAGTGGTGATTCCTTCAGGGGCAGGGAAAAATGTTAATTATG ATAATGGGTCATATATAAGGCCTTCAATATCCCAGAAACTGAAGCATTAATTGTTAGAGGAACTCTGAAAACAGGGTACT TACTCTGTAATTTGCTGCAGCAACCTCGAAGCTAGTTCAAACTAGTGGGAGGTTGTGTGCATCGTAGCGCACACAACACG AAATCGAAATCGAAATCATCATCACCACATTGATCAATCAATATTCATTCGATCATCAAGAATGGCTCGTGGAAAGGTTC AGCTGAGGCGAATTGAGAACCCGGTGCATAGGCAAGTTACCTTCTGCAAGCGGCGAGCAGGGCTTCTGAAGAAGGCTAAG GAGCTTTCTGTGCTGTGTGATGCTGAAATTGGCCTTGTCATTTTCTCCGCGCAAGGAAAGCTCTATGAACTCACCACCAA AGGGTCTCTTTCGCTTTCTTTTTCTCTCACAGACATATCATCAAACAGCTAACATGCATGTATATCAGTCTCTAATTTCA TTCATGCACATATCATCAAACAATTAACATGCATGAATCACTATCTAACTTTTCACTTGCATTTGTTGTTCTGTTTTGTT TCATGTAAATTTGAAAGAACTATGCAAGGGCTCATAGAGAGGTACATGAATTACACACGAGAGGCTGAACCTGAAGCAGT CACTCAAGCGCGTCCTCTGGTATGAGACCACTCTTATTAGTGTGCAATTGCAAATATGATAATGGACCAATAGAAAAAAT ACAAGAAAAATGGAATAATTGTCCTTGTCATTATTATATTATCCTAAAGAATGAGTGGAATTTGATGCTTGAATTGGTGC ATTATCTTCAACATATCATGGAAATGAATAATCAATTAATCACTGTTTGTTTTGTTCTCTCCCTGCTTTATTTTGACACG TATAAGGCATGTCTATATGAGATAAAGTATACCCTGTTTAGTAACAGCTAGCAATAGCATGTGTCTCCTTGATTAAATCT AAGTTGACCAAGCGTGTGAATGGGGCCTTGTGTTGTAGGGAGAGCATCCAACAGTAGGGTTCAATAACATTTTAATGGTT GGTTAATTTTACGCTGAATGTTATTATTGCTCTAAAATATATGCTACTGACTTTATCCCGTATTCACTATCTAGGATGCT AAAGAGGAAACCAATGTGCTAAAACAAGAAATCGACAAATTGCAAAAGGGTATCAGGTACCTAATATCAAATATTTTCTT ACCATATTATTTATCTCTCAAAAAAATATTATAATGTTATATATATAATGTTATGAACCGGCCTTAGGCAATGCCATTTT CTCGAGATAGTTATATATACATAACTGATAAATTTATACCTAATTAGGTATTTGTTTGGAGGAGGATTGGGGACAATGAA AATGGATGAATTACACGTGCTGGAAAAGAATCTTGAAACTTGGATTTATCATGTTCGCTCCATGAAGGTACCGATAAACA CTTTTAAGGCATATTAACATTATATTTTATGTTGGATATGAAGGAGTAGCTAATGTACATATAATGAACTACAGATGAAC ATCATGTTACAAGAAATTCAAGCTTTGAGAGATAAGGTTAGCAGAGACTAATTATGAAATTTATATTCTTGTGTTAGATT TTTTTTTAATTATATTGTTGTATATCCTTGTCAATGAGCTTATAGATTTTTGTTGGTACAAGAACGGAAGTTATAAAGAA TTTAACTCCTTAGTAACCCCTAAACTGAACAAGCATTAGGCACAAGAACTCATATGATCTCACAATTATTATGACATGTT TAGAAACATAATCCAGTTCAATCTCCATTTTTTCAATTGTAAAATTGAAACTAATGTAAATTCTAGTGTGATCAATCCAT GAAAAACATTAAGCATGGAAGTAGTCTCTCAATTAAGAAATAGAAACTTGAATTGATCAGAAGAATGAGAATTAAGCTAC ATGAAATTTGATTTGAAATTCATCTTTCCATAATAAAAAGAATCTAGCTACACATGATTGAAGCAAATGAAACATAAAAA CTAAGAGAGGAAGCCAAGAACAAACATTGAAAAAGCTGATAGCTCCTGAATTTCTCAAAATAGAGATTGTCAATTTTCCC TATATAAGAAAGAGAGAGAGAGGGAACAAATAGAGATAACTGCACTTCTTAGCTTCCAAAACAAGTTTATGGACTCAAGT TTTGTTCATTCGCACCCAAATCTCAATTTAGAGCTAATTCATCAAAAAAATTGTATTCCCACTCACTCTTGCACGTGGCG CTCTGGTGGTCATCTTCTGATAGTACTGTAACATGGACACACTTGATGTAGCATAGACACTCACTCTCTTGATAACAAAA CATTTCTTGTTAACGTCAAATATCACAATTCTTAAAGTTTAATCACCAAATTTCTTATTGCTGAGACTCTAATTCACTTA AAGTCTTATCTAATTCCCTCAGATGGGAAGTAAAATTATCAGAGGGATTGTCTTAATGACTATTCAAAGGTGACTAATTT ATTTTTATCATATCATCAACATAAATCATATATGCAACAAAACCATTTTTGGCATACAAGTATTCTTAGAATAATGTTGT GACATGAATGAATCATACTTTTTTTTAAAGCAAAAGAGATTTATTGAAATTCATTAGAAACATGAATCAAACTTCTTTTA CCACTATTTTGGCTTGCTTTGAACCATGCCCGTTTGTTCTTGAGTTAACACACTAAGTTTTCTTTATGAAGTAAACCAAG CTCACTTTGATACCATTGTTGCAAAATGCTAGAACAAAGTTCTCATTCTATTGATAGTAATTTCTTTTTGGTTTTTCAAA AAAAAAAATGATCTTTCTATGTGACTAAAGTGATCTTAACAAATAAAAAAAAATTAGTGACGAAGAAATTACATTACATC CATATTTTAACATGAAAATTTCTTTCAACTTGAAGGTAAAAAAATACTAGATTGTAGAACTGGAGTATTGTTTATATTTA ATGTTTTACTGAATCAACATTTTACCTTCTGGATTGAAGGAGGGAACACTTAAGGCGGCAAATAAATATCTTCATGACAT GGTAATAGCACATTATGTTTACGTTCATTAAGTAAACCTTTTCTATTTACACATTTTTGAGAAAAATTATTTTAATCACA ACCTTTTTTATTTTACAGGTTGTGGAGAATACTTCAGTTACTAACTTTGATCCATTTGCTACTGATCCTTTATACCCACT AATTATACAAGATGGGGGTTTTCAGTTCTAGGAGAATTAACATTTTATATCTTCTAATAAGGGGGGAAATGACAATTATG TTGGATTGTAAAATATTAAATATGATACGAAGTATGATCTATGTCCTACAAATAATTTGTGTGGTTTGGAATAAGGTGTG ACATTAATGTATGATTCCAATACTTTTTGGAATAAATTTGAAATTTTAAAGTAATAAATGCTTGGTTTGATGCTAGTA
CDS sequence (LotjaGi3g1v0553500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGTGGAAAGGTTCAGCTGAGGCGAATTGAGAACCCGGTGCATAGGCAAGTTACCTTCTGCAAGCGGCGAGCAGG GCTTCTGAAGAAGGCTAAGGAGCTTTCTGTGCTGTGTGATGCTGAAATTGGCCTTGTCATTTTCTCCGCGCAAGGAAAGC TCTATGAACTCACCACCAAAGGAACTATGCAAGGGCTCATAGAGAGGTACATGAATTACACACGAGAGGCTGAACCTGAA GCAGTCACTCAAGCGCGTCCTCTGGATGCTAAAGAGGAAACCAATGTGCTAAAACAAGAAATCGACAAATTGCAAAAGGG TATCAGGTATTTGTTTGGAGGAGGATTGGGGACAATGAAAATGGATGAATTACACGTGCTGGAAAAGAATCTTGAAACTT GGATTTATCATGTTCGCTCCATGAAGATGAACATCATGTTACAAGAAATTCAAGCTTTGAGAGATAAGGAGGGAACACTT AAGGCGGCAAATAAATATCTTCATGACATGGTTGTGGAGAATACTTCAGTTACTAACTTTGATCCATTTGCTACTGATCC TTTATACCCACTAATTATACAAGATGGGGGTTTTCAGTTCTAG
Protein sequence (LotjaGi3g1v0553500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAQGKLYELTTKGTMQGLIERYMNYTREAEPE AVTQARPLDAKEETNVLKQEIDKLQKGIRYLFGGGLGTMKMDELHVLEKNLETWIYHVRSMKMNIMLQEIQALRDKEGTL KAANKYLHDMVVENTSVTNFDPFATDPLYPLIIQDGGFQF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 60 | 60 | 7.5E-35 | ||
| SUPERFAMILY | 1 | 75 | 75 | 8.37E-28 | ||
| ProSiteProfiles | 1 | 61 | 61 | 30.025 | ||
| PANTHER | 2 | 180 | 179 | 4.0E-80 | – | |
| PANTHER | 2 | 180 | 179 | 4.0E-80 | – | |
| CDD | 2 | 78 | 77 | 4.75046E-41 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| PRINTS | 3 | 23 | 21 | 2.9E-27 | ||
| Pfam | 10 | 56 | 47 | 4.3E-23 | ||
| Gene3D | 15 | 94 | 80 | 7.4E-25 | ||
| PRINTS | 23 | 38 | 16 | 2.9E-27 | ||
| PRINTS | 38 | 59 | 22 | 2.9E-27 | ||
| ProSiteProfiles | 87 | 177 | 91 | 11.609 | ||
| Pfam | 90 | 171 | 82 | 3.8E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0553500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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